BAC Information

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BAC

Clone NameB6Ng01-166E07
Chromosome3 (Build37)
Map Location 119,299,151 - 119,452,627
singlet/doubletdoublet
Overlap geneLOC100043278, Ptbp2
Upstream geneDpyd, LOC100043275
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166E07.bB6Ng01-166E07.g
ACCDH958093DH958094
length9571,097
definitionDH958093|Mus musculus domesticus DNA, BAC clone: B6Ng01-166E07, 5' end.DH958094|Mus musculus domesticus DNA, BAC clone: B6Ng01-166E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,299,151 - 119,300,107)(119,451,527 - 119,452,627)
sequence
gaattcctaggactggtatcctgcccatcacacaaatcccttacctgagg
atcttttgtgggtatgtcatgtttaagtgtgaaatggtaaatacaatctc
tcttgtaaaagccacattattgttaattttgcttggtacatgataaattt
ctagcagtggaagaagtagctgatataaaaacaaaagacaatatgaccca
catgaggtttctttaaaaattataaaatcatcagaaatctaagaatttcc
ttcactgtcctaaattttcctcaaaaacactcagcacatgctcagctcat
gttcatcaaaattcttttgaacaggctgtgtgtctaaaggcaagattgca
tctgaacagggtagcagtcctataattacaaacttaaaggctagactggc
ctcttgatctatttctttctcttcatattaagtggcatacaaaggtttta
actcactaaatctacccgtgttaaggtctacttcaacagtgttacaattc
tagattctctctctctttctctctctctgcctctctgtctctctctgtct
ctcagtctctctctctctctgtctctctctgtctctctgtctgtctgtct
ctctctctgtctctctctgtctctctggctgtctgtctgtctgtctctct
gtctctctctctgtgtctctctgtctctctctgtctctctgtctctctgt
ctctctctgtctctctgtctctctgtctctgtctctctgtttctctctgt
ttctctctgtctctctctgtctctctctgtctctctgtctgtctgtctct
ctctctgtctgtctctctctgtctctgtctctctctctctgtctctctgt
ctctgtctctctctgtctctctgtctctgtctctctctgtctctctctgt
ctctctctctgtctctctctgtctctgtctctctgtctctctgtctctct
ggctctc
gaattctcatatagaggtgactggcatgtaaattggtagaatcatttttg
aaatatatctcaagttgagcatatgcatgctgtatacttaataattcccc
tcctaattgcatgcttgagaaagcatatatatgtgaataaaaagatatgc
aaaaaaaaccaaattccagggagcaactgttacattctaggagtttaaag
ctagaaatgacccaagtgtgcagcaataagagaagttgtggaatatctgt
agccaaaaaggactgaacaagctctgtgtatttgtaaagcataagtgtac
atcctaaaacggtatttcttgaaagccagaccaaagtagaccatagatgt
tacagttccatttctttatctgggagagggcgtggttctggtttctggta
cattggtagtgttacaggtctttgttttggatagtgttacaggtttttgt
tttgtttgttgggttaatatttttttcagataagtttaatttgtggtatt
ttactgaggtctcttccaagtatttgagtccttttctgtgtacatgtaat
attttgaaaacctaaaacctctattggcaaactgtgcttcatgtactaaa
agaaagtcatttgttactactattagaaattgtaattgtcaagctaaaaa
agatggttagcgctaaataagcctggaattaattccatgaaaaagtgtgg
gattaataatatgctttttctggaaggacagtgaggggattggtacagga
aaggaaactgaggtgacaaagttgcagggaaaacttcaccttttgtattt
atcgaattttatgtggttaacttgcagtttctagtttaaaagatttgaat
ttgtaacagatgttagttatggtatttaatgctgtcatttagataaatgt
ctgtagggaaatgttgctcttaaggtctttattttccacagtagtattaa
agtattcaaatagttattgttgtaaaatgcttgtttcatttgagtcttgt
gatatatgcatgtgtagtcatattgttattagccatttaaatggggttta
ttagatgtggggccgaccttttggaacataggttgtggatccttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119299151_119300107
seq2: B6Ng01-166E07.b_46_1002

seq1  GAATTCCTAGGACTGGTATCCTGCCCATCACACAAATCCCTTACCTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGGACTGGTATCCTGCCCATCACACAAATCCCTTACCTGAGG  50

seq1  ATCTTTTGTGGGTATGTCATGTTTAAGTGTGAAATGGTAAATACAATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTGTGGGTATGTCATGTTTAAGTGTGAAATGGTAAATACAATCTC  100

seq1  TCTTGTAAAAGCCACATTATTGTTAATTTTGCTTGGTACATGATAAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAAAAGCCACATTATTGTTAATTTTGCTTGGTACATGATAAATTT  150

seq1  CTAGCAGTGGAAGAAGTAGCTGATATAAAAACAAAAGACAATATGACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGTGGAAGAAGTAGCTGATATAAAAACAAAAGACAATATGACCCA  200

seq1  CATGAGGTTTCTTTAAAAATTATAAAATCATCAGAAATCTAAGAATTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGTTTCTTTAAAAATTATAAAATCATCAGAAATCTAAGAATTTCC  250

seq1  TTCACTGTCCTAAATTTTCCTCAAAAACACTCAGCACATGCTCAGCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTCCTAAATTTTCCTCAAAAACACTCAGCACATGCTCAGCTCAT  300

seq1  GTTCATCAAAATTCTTTTGAACAGGCTGTGTGTCTAAAGGCAAGATTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCAAAATTCTTTTGAACAGGCTGTGTGTCTAAAGGCAAGATTGCA  350

seq1  TCTGAACAGGGTAGCAGTCCTATAATTACAAACTTAAAGGCTAGACTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACAGGGTAGCAGTCCTATAATTACAAACTTAAAGGCTAGACTGGC  400

seq1  CTCTTGATCTATTTCTTTCTCTTCATATTAAGTGGCATACAAAGGTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGATCTATTTCTTTCTCTTCATATTAAGTGGCATACAAAGGTTTTA  450

seq1  ACTCACTAAATCTACCCGTGTTAAGGTCTACTTCAACAGTGTTACAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTAAATCTACCCGTGTTAAGGTCTACTTCAACAGTGTTACAATTC  500

seq1  TAGATTCTCTCTCTCTTTCTCTCTCTCTGCCTCTCTGTCTCTCTCTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCTCTCTCTCTTTCTCTCTCTCTGCCTCTCTGTCTCTCTCTGTCT  550

seq1  CTCAGTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTCTGTCTGTCTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTCTGTCTGTCTGTCT  600

seq1  CTCTCTCTGTCTCTCTCTGTCTCTCTGGCTGTCTGTCTGTCTGTCTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGTCTCTCTCTGTCTCTCTGGCTGTCTGTCTGTCTGTCTCTCT  650

seq1  GTCTCTCTCTCTGTGTCTCTCTGTCTCTCTCTGTCTCTCTGTCTCTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTCTCTGTGTCTCTCTGTCTCTCTCTGTCTCTCTGTCTCTCTGT  700

seq1  CTCTCTCTGTCTCTCTGTCTCTCTGTCTCTGTCTCTCTGTTTCTCTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGTCTCTCTGTCTCTCTGTCTCTGTCTCTCTGTTTCTCTCTGT  750

seq1  TTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTGTCTGTCTGTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTGTCTGTCTGTCTCT  800

seq1  CTCTCTGTCTGTCTCTCTCTGTCTCTGTCTCTCTCTCTCTGTCTCTCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTCTGTCTCTCTCTGTCTCTGTCTCTCTCTCTCTGTCTCTCTGT  850

seq1  CTCTGTCTCTCTCTGTCTCTCTGTCTCTGTCTCTCTCTGTCTCTCTCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCTCTCTGTCTCTCTGTCTCTGTCTCTCTCTGTCTCTCTCTGT  900

seq1  CTCTCTCTCTGTCTCTCTCTGTCTCTGTCTCTCTGTCTCTCTGTCTCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTGTCTCTCTCTGTCTCTGTCTCTCTGTCTCTCTGTCTCTCT  950

seq1  GTCTCTC  957
      | |||||
seq2  GGCTCTC  957

seq1: chr3_119451527_119452627
seq2: B6Ng01-166E07.g_68_1163 (reverse)

seq1  CCAAGGATCACACAACCTAAGATTCAAAAAGTCGGCACACACATCTAAAT  50
      ||||||||| ||||||||| | | ||||| |||||| | ||||||| |||
seq2  CCAAGGATC-CACAACCTATGTTCCAAAAGGTCGGC-CCCACATCT-AAT  47

seq1  AAACACCATTTAAATGCTAAATAACAATATGAACTACACATGCATATATC  100
      |||| |||||||||||   |||||||||||| ||||||||||||||||||
seq2  AAACCCCATTTAAATGGCTAATAACAATATG-ACTACACATGCATATATC  96

seq1  ACAAGAACCTCAAATGAAAC-AGCATTTTACAACAATAACTATTTG-ATA  148
      ||||||  |||||||||||| ||||||||||||||||||||||||| |||
seq2  ACAAGA--CTCAAATGAAACAAGCATTTTACAACAATAACTATTTGAATA  144

seq1  CTTTAATACTACTGTGGAAAATAAAGACCTTAAGAGCAACATTTCCCTAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATACTACTGTGGAAAATAAAGACCTTAAGAGCAACATTTCCCTAC  194

seq1  AGACATTTATCTAAATGACAGCATTAAATACCATAACTAACATCTGTTAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTATCTAAATGACAGCATTAAATACCATAACTAACATCTGTTAC  244

seq1  AAATTCAAATCTTTTAAAACTAGAAACTGCAAGTTAACCACATAAAATTC  298
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAATTCAAATCTTTT-AAACTAGAAACTGCAAGTTAACCACATAAAATTC  293

seq1  GATAAATACAAAAGGTGAAGTTTTCCCTGCAACTTTGTCACCTCAGTTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATACAAAAGGTGAAGTTTTCCCTGCAACTTTGTCACCTCAGTTTC  343

seq1  CTTTCCTGTACCAATCCCCTCACTGTCCTTCCAGAAAAAGCATATTATTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGTACCAATCCCCTCACTGTCCTTCCAGAAAAAGCATATTATTA  393

seq1  ATCCCACACTTTTTCATGGAATTAATTCCAGGCTTATTTAGCGCTAACCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACACTTTTTCATGGAATTAATTCCAGGCTTATTTAGCGCTAACCA  443

seq1  TCTTTTTTAGCTTGACAATTACAATTTCTAATAGTAGTAACAAATGACTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTAGCTTGACAATTACAATTTCTAATAGTAGTAACAAATGACTT  493

seq1  TCTTTTAGTACATGAAGCACAGTTTGCCAATAGAGGTTTTAGGTTTTCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAGTACATGAAGCACAGTTTGCCAATAGAGGTTTTAGGTTTTCAA  543

seq1  AATATTACATGTACACAGAAAAGGACTCAAATACTTGGAAGAGACCTCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTACATGTACACAGAAAAGGACTCAAATACTTGGAAGAGACCTCAG  593

seq1  TAAAATACCACAAATTAAACTTATCTGAAAAAAATATTAACCCAACAAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACCACAAATTAAACTTATCTGAAAAAAATATTAACCCAACAAAC  643

seq1  AAAACAAAAACCTGTAACACTATCCAAAACAAAGACCTGTAACACTACCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACCTGTAACACTATCCAAAACAAAGACCTGTAACACTACCA  693

seq1  ATGTACCAGAAACCAGAACCACGCCCTCTCCCAGATAAAGAAATGGAACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCAGAAACCAGAACCACGCCCTCTCCCAGATAAAGAAATGGAACT  743

seq1  GTAACATCTATGGTCTACTTTGGTCTGGCTTTCAAGAAATACCGTTTTAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATCTATGGTCTACTTTGGTCTGGCTTTCAAGAAATACCGTTTTAG  793

seq1  GATGTACACTTATGCTTTACAAATACACAGAGCTTGTTCAGTCCTTTTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACACTTATGCTTTACAAATACACAGAGCTTGTTCAGTCCTTTTTG  843

seq1  GCTACAGATATTCCACAACTTCTCTTATTGCTGCACACTTGGGTCATTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGATATTCCACAACTTCTCTTATTGCTGCACACTTGGGTCATTTC  893

seq1  TAGCTTTAAACTCCTAGAATGTAACAGTTGCTCCCTGGAATTTGGTTTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTAAACTCCTAGAATGTAACAGTTGCTCCCTGGAATTTGGTTTTT  943

seq1  TTTGCATATCTTTTTATTCACATATATATGCTTTCTCAAGCATGCAATTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATATCTTTTTATTCACATATATATGCTTTCTCAAGCATGCAATTA  993

seq1  GGAGGGGAATTATTAAGTATACAGCATGCATATGCTCAACTTGAGATATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGAATTATTAAGTATACAGCATGCATATGCTCAACTTGAGATATA  1043

seq1  TTTCAAAAATGATTCTACCAATTTACATGCCAGTCACCTCTATATGAGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAATGATTCTACCAATTTACATGCCAGTCACCTCTATATGAGAA  1093

seq1  TTC  1101
      |||
seq2  TTC  1096