BAC Information

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BAC

Clone NameB6Ng01-166H16
Chromosome3 (Build37)12 (Build37)
Map Location 126,055,711 - 126,056,852108,818,336 - 108,818,392
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNdst4, Ugt8a
Downstream geneArsj, Camk2d, Ank2, LOC100043749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166H16.bB6Ng01-166H16.g
ACCDH958248DH958249
length1,137521
definitionDH958248|Mus musculus domesticus DNA, BAC clone: B6Ng01-166H16, 5' end.DH958249|Mus musculus domesticus DNA, BAC clone: B6Ng01-166H16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(126,055,711 - 126,056,852)(108,818,336 - 108,818,392)
sequence
gaattcaatgaattagagatctaggaacattgtgtaccaaggcaaagggc
cattctttctatgactcaccagggaggagctactctctgtaccttctctg
gttctattttctttagagaacaaggtaagcaaccatatttggctgttacc
ttggtttattacaattagacaaatattttaatgatatctgatcttccact
tttaaaaaattggccccatcccataatactgaggatggcctcaccagggt
atgattttgaatgagtcttctctggcctcaaactgcattatcaggctacc
atacactagcttttagcccttccccgactccttagatgaaaaagtaatca
tttgaattctcaggtgacccattttcaaggaattttctgaagtgagagct
atggagaaaacgggagaaatatagacatttacaggaatgctacaaaacac
tttcatgtgtattattcctacccaatccacagaaaataacagtagcagta
gatagagaccacaccctgcacacctgtaacagactaaaacattgaataca
tgtagtgtcttgatggacagtaggaaaaaaagtcaaactctgtcttaatc
ttttccttgaagtatgttaaatatttgaaggttatttttaaaagagacta
tataactcacagtgaagattatatataattctaccatgagatagttcagt
agtctttcagagacacacgctcttccagctggcttctgtttgaacatttt
ctgacatatagttggtgctgatatccaactggcttctgccctagaaattc
tgtgttcttttattaaggagatagaaaaggaatctcaaagagaaaggaga
tattattttgggcctgggactcatctctttttatgtatttgaagccacca
acactcagaaaaattaaagggacttgctctatatcatgaggagacattgc
atggaccctaaccctaaccctgcagaacagagttgatggcctccctgtgc
ccaggagggtctcactctgtcagctggtgttctttcctcccaatttctat
gatcctcctctctgttaacacttatctctcccagtgacctcacctgacta
tttaaaaaaaatatttatcttcttggaataaacataa
tgtttagatttgtactccattttaaaatgagattatttgggcttttggca
tctaatttcttgacttctttttatattttctatattagtgcactattgga
tgtagagtttgtaaaatcctttcccattctctaggctgctgctttgtctg
actgatggtatcgtttggcttacagaagctgttcagtttcatgaggtacc
actgattaattgtcaatctcagtgattgtgctaccggtattcttaagtct
attttcttggaatatctatttccaaccttttactatgaggcctcttcttg
atgttgagttgtgttttgtggatacagtagagggatgtatgctgtttctt
aatctattctgttagtctctgaattgaaaccattgatatcaagaaatatc
aatgaccaatgatttttttattcctatcattttgtttgcaagaggtagta
gtggtagtatgtttgtgtgcatgtatgtatgtctgtgtgtgtttgtgcgt
gtgcatgtgtgtatatgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_126055711_126056852
seq2: B6Ng01-166H16.b_46_1182

seq1  GAATTCAATGAATTAGAGATCTAGGAACATTGTGTACCAAGGCAAAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAATTAGAGATCTAGGAACATTGTGTACCAAGGCAAAGGGC  50

seq1  CATTCTTTCTATGACTCACCAGGGAGGAGCTACTCTCTGTACCTTCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTCTATGACTCACCAGGGAGGAGCTACTCTCTGTACCTTCTCTG  100

seq1  GTTCTATTTTCTTTAGAGAACAAGGTAAGCAACCATATTTGGCTGTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATTTTCTTTAGAGAACAAGGTAAGCAACCATATTTGGCTGTTACC  150

seq1  TTGGTTTATTACAATTAGACAAATATTTTAATGATATCTGATCTTCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTATTACAATTAGACAAATATTTTAATGATATCTGATCTTCCACT  200

seq1  TTTAAAAAATTGGCCCCATCCCATAATACTGAGGATGGCCTCACCAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAATTGGCCCCATCCCATAATACTGAGGATGGCCTCACCAGGGT  250

seq1  ATGATTTTGAATGAGTCTTCTCTGGCCTCAAACTGCATTATCAGGCTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTGAATGAGTCTTCTCTGGCCTCAAACTGCATTATCAGGCTACC  300

seq1  ATACACTAGCTTTTAGCCCTTCCCCGACTCCTTAGATGAAAAAGTAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTAGCTTTTAGCCCTTCCCCGACTCCTTAGATGAAAAAGTAATCA  350

seq1  TTTGAATTCTCAGGTGACCCATTTTCAAGGAATTTTCTGAAGTGAGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTCTCAGGTGACCCATTTTCAAGGAATTTTCTGAAGTGAGAGCT  400

seq1  ATGGAGAAAACGGGAGAAATATAGACATTTACAGGAATGCTACAAAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAAAACGGGAGAAATATAGACATTTACAGGAATGCTACAAAACAC  450

seq1  TTTCATGTGTATTATTCCTACCCAATCCACAGAAAATAACAGTAGCAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTGTATTATTCCTACCCAATCCACAGAAAATAACAGTAGCAGTA  500

seq1  GATAGAGACCACACCCTGCACACCTGTAACAGACTAAAACATTGAATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGACCACACCCTGCACACCTGTAACAGACTAAAACATTGAATACA  550

seq1  TGTAGTGTCTTGATGGACAGTAGGAAAAAAAGTCAAACTCTGTCTTAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGTCTTGATGGACAGTAGGAAAAAAAGTCAAACTCTGTCTTAATC  600

seq1  TTTTCCTTGAAGTATGTTAAATATTTGAAGGTTATTTTTAAAAGAGACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTGAAGTATGTTAAATATTTGAAGGTTATTTTTAAAAGAGACTA  650

seq1  TATAACTCACAGTGAAGATTATATATAATTCTACCATGAGATAGTTCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTCACAGTGAAGATTATATATAATTCTACCATGAGATAGTTCAGT  700

seq1  AGTCTTTCAGAGACACACGCTCTTCCAGCTGGCTTCTGTTTGAACATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTCAGAGACACACGCTCTTCCAGCTGGCTTCTGTTTGAACATTTT  750

seq1  CTGACATATAGTTGGTGCTGATATCCAACTGGCTTCTGCCCTAGAAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATATAGTTGGTGCTGATATCCAACTGGCTTCTGCCCTAGAAATTC  800

seq1  TGTGTTCTTTTATTAAGGAGATAGAAAAGGAATCTCAAAGAGAAAGGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTTTATTAAGGAGATAGAAAAGGAATCTCAAAGAGAAAGGAGA  850

seq1  TATTATTTTGGGCCTGGGACTCATCTCTTTTTATGTATTTGAAGCCACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTGGGCCTGGGACTCATCTCTTTTTATGTATTTGAAGCCACCA  900

seq1  ACACTCAGAAAAATT-AAGGGACTTGCTCTATATCATGAGGAGACATTGC  949
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACACTCAGAAAAATTAAAGGGACTTGCTCTATATCATGAGGAGACATTGC  950

seq1  ATGGGACCCTAACCCTAACCCTGCAGAACAGGAGTTGATGGCCTCCCTGT  999
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AT-GGACCCTAACCCTAACCCTGCAGAACA-GAGTTGATGGCCTCCCTGT  998

seq1  GCCCAGGAAGGGTCTCCACTCTGTCCAGCTGGTGTTCTTTCCTCCCCATT  1049
      ||||||| ||||||| |||||||| ||||||||||||||||||||| |||
seq2  GCCCAGG-AGGGTCT-CACTCTGT-CAGCTGGTGTTCTTTCCTCCCAATT  1045

seq1  TCTTATGATCCTCTCTTCTGTTTAACAC-TATCTCTCCCAGTGACTCAAC  1098
      || ||||||||||   |||| ||||||| ||||||||||||||||   ||
seq2  TC-TATGATCCTCCTCTCTG-TTAACACTTATCTCTCCCAGTGACCTCAC  1093

seq1  CTGACTAATTTAAAAAAAATATTTATCTTC-TGGAATTAACATAA  1142
      |||||| ||||||||||||||||||||||| |||||| |||||||
seq2  CTGACT-ATTTAAAAAAAATATTTATCTTCTTGGAATAAACATAA  1137

seq1: chr12_108818336_108818392
seq2: B6Ng01-166H16.g_530_594 (reverse)

seq1  CACACATATACACACATGCAC--------ATACACACACACATACATACA  42
      |||||||||||||||||||||        | ||||||| |||||||||||
seq2  CACACATATACACACATGCACACGCACAAACACACACAGACATACATACA  50

seq1  TGCACACACACATAC  57
      |||||||| ||||||
seq2  TGCACACAAACATAC  65