BAC Information

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BAC

Clone NameB6Ng01-166H18
Chromosome3 (Build37)
Map Location 85,137,896 - 85,274,087
singlet/doubletdoublet
Overlap genenone
Upstream gene6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
Downstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201, Lrba
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166H18.bB6Ng01-166H18.g
ACCDH958252DH958253
length1,1511,043
definitionDH958252|Mus musculus domesticus DNA, BAC clone: B6Ng01-166H18, 5' end.DH958253|Mus musculus domesticus DNA, BAC clone: B6Ng01-166H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,272,925 - 85,274,087)(85,137,896 - 85,138,544)
sequence
gaattcaaattgaatgtgttctcccttctgcttagggcctggtgcctgaa
ctacggtttcatgggtttcatgccatgttctttagtattggcccacattc
cttgtcccatttacagtggtttccccatcacagcctgtggcagaatgaat
tcctgtcctcatttttgccatgtgactcccctgccacagcctcaccgtag
tactgttgtactgtctgctgcttgaccttgacttagtcaccacacaggat
gggcgtggtcttgacccctatggaagattggcaggcgcctatgccattgg
gtttgctggcctcgggtgctgctattgtaaactgctcctcctactctgct
ctcaggccccggaccgaggctgtgaaggtcagctgcccttatccatgcac
tactgggcagtggaaacaacaggcttcttggtgggcactactggatgttt
gtggttgccatgcagcaactgatgactggtacagactccaaagcactctc
gagggcccacctcgtggcattctctctaatggcttgtttttggatcctct
tgcccttactgattacatgatagcagctgttcctgccttggggcttcgta
ttggctgtgtcctctactgtattttcttctgtgggtcactgtcggtgcta
aatgcagtgaaatgaactagcgagacagtgggccctggcaagggcagaag
gaaacagtgacatggggtgacctgagcggtggcattgtgcagacaactgg
aggaggagagaggacagctcacacatatcagtctgggtggagggaaagag
agctagaggccagctggatctggtgtgctctctctctctctctctctgtt
tcttcccgaatcagtggctttagatacaccatcgcattatctaaaacctc
cctccttccctcctcatcctgcctgctccccatcttcttaattggggtca
atctttccagtctctcagctcaagggagagtagtatctgctgtagcagat
gtctacattctgtgacatcctagctttccagtatccctttgaaacaatct
ggagtttgttagcctctcaacatatgaaaagtagacttagaaaaaaaaat
gtttaaaggaggtaataaatttttttctctgcaatccatataaaaaattc
t
gaattctctctctccctctctctgatttatttattttatgtatactagta
cactgttattgtctacagacacaccagaagaggcactgactcccattaca
gggaattgtgagccaccatgtggtttcggggaattgaactcaagacctct
ggaagagcagcctgtgctcttaaccactgagccatctctccagccctcta
gggcattttcttaattagaaagtggtgtagatgaaccagcccattgtagg
taatgttaaccctaaactcgatgtcctgggtgtataagaaagcaggctga
gtaagccatgaagaacaagccagtaagtagcactctttcatgacctctgc
atcagctcctgcccccaagttcctgctctgcttgaatgctgttgcctccc
cccaccccaacctgaagctcagctgagccagaccttgactttgctgccac
taaggagattacctagggttgagcctgcctccctagatcattccttaggt
cactgctgctacctgctgggagtagggatagcctagctattccgggagac
tacatccgatcctacactcctacacgtggtcacctgcagctgggctccaa
ggatgaattggagggaatgggcctcccctctccttcattaaacattagaa
ccttgagcagactagttgtcttggttccattatttctctacccacctagg
ttccctcttctatttccagctccagactgcctcccaggctcgaacccaga
catgagaggcacaggccggacccaacagaatgcctgtcctgatttctctc
agtgatggactgatggaagtataagccctttcctgcccaagttgcctttg
gtcatggtgtttcatcacagcaataggaaccatcactgagatagggggcc
atcatcatagaaagttctgctctagacttttatctaatcatcctctaggt
ctcgactctactcttcccaatgactaattctcattctgttccaccacaca
gaaaattctcataaatctctctccttctccctctcctctcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_85272925_85274087
seq2: B6Ng01-166H18.b_46_1196 (reverse)

seq1  AGAA-TATTTATATGAATAGCAGAGGAAAAAATATTTATTTACTTCCTTT  49
      |||| | |||||||| || ||||||  ||||| ||||| |||| ||| ||
seq2  AGAATTTTTTATATGGATTGCAGAG--AAAAAAATTTA-TTACCTCC-TT  46

seq1  TAAACATTTTTTTTTCTAAGTCTAACTTTTCATATTGTTGGGAGGCT-AC  98
      ||||||||||||||||||||||| |||||||||| ||||| |||||| ||
seq2  TAAACATTTTTTTTTCTAAGTCT-ACTTTTCATA-TGTTGAGAGGCTAAC  94

seq1  AAACTCAAGATTGTTTCCAAGGGATACCTGGAAAGCTAGGATGTCACCAG  148
      |||||| |||||||||| |||||||| ||||||||||||||||||| |||
seq2  AAACTCCAGATTGTTTCAAAGGGATA-CTGGAAAGCTAGGATGTCA-CAG  142

seq1  AATGTAGGACCATCTGCTACAGCAGATACTACTTCCTCCCTTGAGCTGAG  198
      |||||||   |||||||||||||||||||||||  |||||||||||||||
seq2  AATGTAG--ACATCTGCTACAGCAGATACTACT--CTCCCTTGAGCTGAG  188

seq1  AGACTTGGAAAGATTGACCCCAATTAAGAAGATGGGGGAGCAGGCAGGAT  248
      |||| |||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGAC-TGGAAAGATTGACCCCAATTAAGAAGAT-GGGGAGCAGGCAGGAT  236

seq1  GAGGAGGGAAGGAGGGAGGTTTTAGATAATGCGATGGTGTATCTAAAGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGAAGGAGGGAGGTTTTAGATAATGCGATGGTGTATCTAAAGCC  286

seq1  ACTGATTCGGGAAGAAACAGAGAGAGAGAGAGAGAGAGCACACCAGATCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTCGGGAAGAAACAGAGAGAGAGAGAGAGAGAGCACACCAGATCC  336

seq1  AGCTGGCCTCTAGCTCTCTTTCCCTCCACCCAGACTGATATGTGTGAGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCCTCTAGCTCTCTTTCCCTCCACCCAGACTGATATGTGTGAGCT  386

seq1  GTCCTCTCTCCTCCTCCAGTTGTCTGCACAATGCCACCGCTCAGGTCACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTCTCCTCCTCCAGTTGTCTGCACAATGCCACCGCTCAGGTCACC  436

seq1  CCATGTCACTGTTTCCTTCTGCCCTTGCCAGGGCCCACTGTCTCGCTAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCACTGTTTCCTTCTGCCCTTGCCAGGGCCCACTGTCTCGCTAGT  486

seq1  TCATTTCACTGCATTTAGCACCGACAGTGACCCACAGAAGAAAATACAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCACTGCATTTAGCACCGACAGTGACCCACAGAAGAAAATACAGT  536

seq1  AGAGGACACAGCCAATACGAAGCCCCAAGGCAGGAACAGCTGCTATCATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACACAGCCAATACGAAGCCCCAAGGCAGGAACAGCTGCTATCATG  586

seq1  TAATCAGTAAGGGCAAGAGGATCCAAAAACAAGCCATTAGAGAGAATGCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGTAAGGGCAAGAGGATCCAAAAACAAGCCATTAGAGAGAATGCC  636

seq1  ACGAGGTGGGCCCTCGAGAGTGCTTTGGAGTCTGTACCAGTCATCAGTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGTGGGCCCTCGAGAGTGCTTTGGAGTCTGTACCAGTCATCAGTTG  686

seq1  CTGCATGGCAACCACAAACATCCAGTAGTGCCCACCAAGAAGCCTGTTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGGCAACCACAAACATCCAGTAGTGCCCACCAAGAAGCCTGTTGT  736

seq1  TTCCACTGCCCAGTAGTGCATGGATAAGGGCAGCTGACCTTCACAGCCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGCCCAGTAGTGCATGGATAAGGGCAGCTGACCTTCACAGCCTC  786

seq1  GGTCCGGGGCCTGAGAGCAGAGTAGGAGGAGCAGTTTACAATAGCAGCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCGGGGCCTGAGAGCAGAGTAGGAGGAGCAGTTTACAATAGCAGCAC  836

seq1  CCGAGGCCAGCAAACCCAATGGCATAGGCGCCTGCCAATCTTCCATAGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGCCAGCAAACCCAATGGCATAGGCGCCTGCCAATCTTCCATAGGG  886

seq1  GTCAAGACCACGCCCATCCTGTGTGGTGACTAAGTCAAGGTCAAGCAGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGACCACGCCCATCCTGTGTGGTGACTAAGTCAAGGTCAAGCAGCA  936

seq1  GACAGTACAACAGTACTACGGTGAGGCTGTGGCAGGGGAGTCACATGGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTACAACAGTACTACGGTGAGGCTGTGGCAGGGGAGTCACATGGCA  986

seq1  AAAATGAGGACAGGAATTCATTCTGCCACAGGCTGTGATGGGGAAACCAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGGACAGGAATTCATTCTGCCACAGGCTGTGATGGGGAAACCAC  1036

seq1  TGTAAATGGGACAAGGAATGTGGGCCAATACTAAAGAACATGGCATGAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGGGACAAGGAATGTGGGCCAATACTAAAGAACATGGCATGAAA  1086

seq1  CCCATGAAACCGTAGTTCAGGCACCAGGCCCTAAGCAGAAGGGAGAACAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAAACCGTAGTTCAGGCACCAGGCCCTAAGCAGAAGGGAGAACAC  1136

seq1  ATTCAATTTGAATTC  1163
      |||||||||||||||
seq2  ATTCAATTTGAATTC  1151

seq1: chr3_85137896_85138544
seq2: B6Ng01-166H18.g_464_1110

seq1  TCCCCCCACCCCAACCTGAAGCTCAGCTGAGCCAGACCTTGACTTTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCACCCCAACCTGAAGCTCAGCTGAGCCAGACCTTGACTTTGCTG  50

seq1  CCACTAAGGAGATTACCTAGGGTTGAGCCTGCCTCCCTAGATCATTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAGGAGATTACCTAGGGTTGAGCCTGCCTCCCTAGATCATTCCTT  100

seq1  AGGTCACTGCTGCTACCTGCTGGGAGTAGGGATAGCCTAGCTATTCCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACTGCTGCTACCTGCTGGGAGTAGGGATAGCCTAGCTATTCCGGG  150

seq1  AGACTACATCCGATCCTACACTCCTACACGTGGTCACCTGCAGCTGGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACATCCGATCCTACACTCCTACACGTGGTCACCTGCAGCTGGGCT  200

seq1  CCAAGGATGAATTGGAGGGAATGGGCCTCCCCTCTCCTTCATTAAACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGATGAATTGGAGGGAATGGGCCTCCCCTCTCCTTCATTAAACATT  250

seq1  AGAACCTTGAGCAGACTAGTTGTCTTGGTTCCATTATTTCTCTACCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTTGAGCAGACTAGTTGTCTTGGTTCCATTATTTCTCTACCCACC  300

seq1  TAGGTTCCCTCTTCTATTTCCAGCTCCAGACTGCCTCCCAGGCTCGAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCCCTCTTCTATTTCCAGCTCCAGACTGCCTCCCAGGCTCGAACC  350

seq1  CAGACATGAGAGGCACAGGCCGGACCCAACAGAATGCCTGTCCTGATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATGAGAGGCACAGGCCGGACCCAACAGAATGCCTGTCCTGATTTC  400

seq1  TCTCAGTGATGGACTGATGGAAGTATAAGCCCTTTCCTGCCCAAGTTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGATGGACTGATGGAAGTATAAGCCCTTTCCTGCCCAAGTTGCC  450

seq1  TTTGGTCATGGTGTTTCATCACAGCAATAGGAACCATCACTGAGATAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCATGGTGTTTCATCACAGCAATAGGAACCATCACTGAGATAGGG  500

seq1  GGCCATCATCATAGAAAGTTCTGCTCTAGACTTTTATCTTAATCATCCTC  550
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGCCATCATCATAGAAAGTTCTGCTCTAGACTTTTATC-TAATCATCCTC  549

seq1  TAGGTCTCGACTCTACTTCTTCCCAATGACTAATTCTCATTCTGTTCCAC  600
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAGGTCTCGACTCTAC-TCTTCCCAATGACTAATTCTCATTCTGTTCCAC  598

seq1  CACACAGAAAATTCTCAT-AATCTCTCTCCCTCTCCCTCTCCCTCTCCCT  649
      |||||||||||||||||| ||||||||||| ||||||||| ||||||| |
seq2  CACACAGAAAATTCTCATAAATCTCTCTCCTTCTCCCTCT-CCTCTCCTT  647