BAC Information

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BAC

Clone NameB6Ng01-166K19
Chromosome3 (Build37)
Map Location 108,074,088 - 108,225,247
singlet/doubletdoublet
Overlap genePsma5, Sort1, Mybphl, Psrc1, Celsr2
Upstream geneHbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686
Downstream geneSars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166K19.bB6Ng01-166K19.g
ACCDH958383DH958384
length7041,111
definitionDH958383|Mus musculus domesticus DNA, BAC clone: B6Ng01-166K19, 5' end.DH958384|Mus musculus domesticus DNA, BAC clone: B6Ng01-166K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,224,545 - 108,225,247)(108,074,088 - 108,075,200)
sequence
gaattcagtttgtggctgaagtgacacccaacggcctaccagatagaagt
tcgaagcatgaagagacacctgacatctgtgccatccacctatcatttat
ttattcatctgatatttattgagtgcctactatgtctctggtcacatgct
agatgtgaggtatttgtgggactcattctccctggtcctgagaataacat
gttaagcaagtaaattgacaggtacaaatcctatataattgcacattgcc
atgcgtgaagaaggaagcagcaactgggaggaggctcaggtacccagaac
agagtggggagtagggaaaggctaggccagttcacatggagctttatagg
ctaaaaatggaggggaggggggttgtccactgtgcaacagggtagagttc
tcagcagggaagcaacatattcagacttaagttcgaaatgttactctctg
agaagaacatcatgaagggtccttaaatcacataactccttttggggctt
ggtggcatacacctttaatcccagcacttgggatgcagaggtagggagat
ctctgtgggttcaagttctgcctggtctacagagtgaatttctagaacag
ccagggctatgtagagaggtagagaaatcctgtcgaacagacacacacac
atatacacacaaagagagagagagaggaagagaagagaagaagagaagag
aaga
gaattccagaccagagagagattgatttcaaaaaggtatctgtggagtaa
catccaagttgtcctctgacttccacttgggtgcatgtgcaacccccccc
ccccaacaaacacccccacacacacacatctgcacatacctgaaaataca
gacactaaagagaggaaaaatggttaccaaacagatcacactgttgtgag
aattaatcagaaataacagacacagaataatccattgcttttagaaaatg
ttaccagtaagcttgttcaatatgaggttgccactgatctgcagtatttg
ctaagtgcagcacaacaaagcacaataaaatgcggtttgcttgtaatata
gctttcatatgtagagaaaattaaatgttagttagtgctgtgtgtgtatg
tgtacacaagtgagagccatataggaagaggaatttgaaatgagagaata
cctcatcaaattagtttttgggcaaatccttaggatgttttcttgattag
tgattagtacgggagggtctagctcactacaggtggtgccacctctgtgc
aggtggttctgggatgtataagatagcaaattgagcaagccaggaagagc
aagccagtaagcagcattcctccatagcctctgctacctttccttcctct
acttccctcagtgatggagtgtgacctgagagttctaagatgaaataaat
cctttcttccaaaggtactgttggtcatggtgtttatcacatcaatagga
accctaagacaggaaataaaatggaaagtggattttctgaatcattggat
tgccctctttaggtcacttggatattactaggctgttcaccaggttatat
catcctctagatcatgggaattgagataagcatatactagggacgcacag
ccctgtcctctttctcaaagatgatttactagatgagcgttagtgagaca
tttttcttctagtatatatccttgaatatttacattattatttatgtact
acattatacaaatagggtgtaaaggtttattatatcagctaagttgtttc
tgcaagaagatgcggggaaaggttaaggaaggaatcaacgtcaactaaca
gctccttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_108224545_108225247
seq2: B6Ng01-166K19.b_43_746 (reverse)

seq1  TCTTCTCTTCTCTTCTTCTCTTCTCTTCCTCTCTCTCTCTCTTTGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTTCTCTTCTTCTCTTCTCTTCCTCTCTCTCTCTCTTTGTGTGT  50

seq1  ATATGTGTGTGTGTCTGTTCGACAGGATTTCTCTACCTCTCTACATAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTGTGTGTCTGTTCGACAGGATTTCTCTACCTCTCTACATAGCC  100

seq1  CTGGCTGTTCTAG-AATTCACTCTGTAGACCAGGCAGAACTTGAACCCAC  149
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTTCTAGAAATTCACTCTGTAGACCAGGCAGAACTTGAACCCAC  150

seq1  AGAGATCTCCCTACCTCTGCATCCCAAGTGCTGGGATTAAAGGTGTATGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCTCCCTACCTCTGCATCCCAAGTGCTGGGATTAAAGGTGTATGC  200

seq1  CACCAAGCCCCAAAAGGAGTTATGTGATTTAAGGACCCTTCATGATGTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGCCCCAAAAGGAGTTATGTGATTTAAGGACCCTTCATGATGTTC  250

seq1  TTCTCAGAGAGTAACATTTCGAACTTAAGTCTGAATATGTTGCTTCCCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGAGAGTAACATTTCGAACTTAAGTCTGAATATGTTGCTTCCCTG  300

seq1  CTGAGAACTCTACCCTGTTGCACAGTGGACAACCCCCCTCCCCTCCATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACTCTACCCTGTTGCACAGTGGACAACCCCCCTCCCCTCCATTT  350

seq1  TTAGCCTATAAAGCTCCATGTGAACTGGCCTAGCCTTTCCCTACTCCCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTATAAAGCTCCATGTGAACTGGCCTAGCCTTTCCCTACTCCCCA  400

seq1  CTCTGTTCTGGGTACCTGAGCCTCCTCCCAGTTGCTGCTTCCTTCTTCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCTGGGTACCTGAGCCTCCTCCCAGTTGCTGCTTCCTTCTTCAC  450

seq1  GCATGGCAATGTGCAATTATATAGGATTTGTACCTGTCAATTTACTTGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCAATGTGCAATTATATAGGATTTGTACCTGTCAATTTACTTGCT  500

seq1  TAACATGTTATTCTCAGGACCAGGGAGAATGAGTCCCACAAATACCTCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGTTATTCTCAGGACCAGGGAGAATGAGTCCCACAAATACCTCAC  550

seq1  ATCTAGCATGTGACCAGAGACATAGTAGGCACTCAATAAATATCAGATGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCATGTGACCAGAGACATAGTAGGCACTCAATAAATATCAGATGA  600

seq1  ATAAATAAATGATAGGTGGATGGCACAGATGTCAGGTGTCTCTTCATGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATGATAGGTGGATGGCACAGATGTCAGGTGTCTCTTCATGCT  650

seq1  TCGAACTTCTATCTGGTAGGCCGTTGGGTGTCACTTCAGCCACAAACTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTTCTATCTGGTAGGCCGTTGGGTGTCACTTCAGCCACAAACTGA  700

seq1  ATTC  703
      ||||
seq2  ATTC  704

seq1: chr3_108074088_108075200
seq2: B6Ng01-166K19.g_67_1177

seq1  GAATTCCAGACCAGAGAGAGATTGATTTCAAAAAGGTATCTGTGGAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCAGAGAGAGATTGATTTCAAAAAGGTATCTGTGGAGTAA  50

seq1  CATCCAAGTTGTCCTCTGACTTCCACTTGGGTGCATGTGCAACCCCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAGTTGTCCTCTGACTTCCACTTGGGTGCATGTGCAACCCCCCCC  100

seq1  CCCCAACAAACACCCCCACACACACACATCTGCACATACCTGAAAATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACAAACACCCCCACACACACACATCTGCACATACCTGAAAATACA  150

seq1  GACACTAAAGAGAGGAAAAATGGTTACCAAACAGATCACACTGTTGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTAAAGAGAGGAAAAATGGTTACCAAACAGATCACACTGTTGTGAG  200

seq1  AATTAATCAGAAATAACAGACACAGAATAATCCATTGCTTTTAGAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATCAGAAATAACAGACACAGAATAATCCATTGCTTTTAGAAAATG  250

seq1  TTACCAGTAAGCTTGTTCAATATGAGGTTGCCACTGATCTGCAGTATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGTAAGCTTGTTCAATATGAGGTTGCCACTGATCTGCAGTATTTG  300

seq1  CTAAGTGCAGCACAACAAAGCACAATAAAATGCGGTTTGCTTGTAATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGCAGCACAACAAAGCACAATAAAATGCGGTTTGCTTGTAATATA  350

seq1  GCTTTCATATGTAGAGAAAATTAAATGTTAGTTAGTGCTGTGTGTGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCATATGTAGAGAAAATTAAATGTTAGTTAGTGCTGTGTGTGTATG  400

seq1  TGTACACAAGTGAGAGCCATATAGGAAGAGGAATTTGAAATGAGAGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACAAGTGAGAGCCATATAGGAAGAGGAATTTGAAATGAGAGAATA  450

seq1  CCTCATCAAATTAGTTTTTGGGCAAATCCTTAGGATGTTTTCTTGATTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCAAATTAGTTTTTGGGCAAATCCTTAGGATGTTTTCTTGATTAG  500

seq1  TGATTAGTACGGGAGGGTCTAGCTCACTACAGGTGGTGCCACCTCTGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGTACGGGAGGGTCTAGCTCACTACAGGTGGTGCCACCTCTGTGC  550

seq1  AGGTGGTTCTGGGATGTATAAGATAGCAAATTGAGCAAGCCAGGAAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTTCTGGGATGTATAAGATAGCAAATTGAGCAAGCCAGGAAGAGC  600

seq1  AAGCCAGTAAGCAGCATTCCTCCATAGCCTCTGCTACCTTTCCTTCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTAAGCAGCATTCCTCCATAGCCTCTGCTACCTTTCCTTCCTCT  650

seq1  ACTTCCCTCAGTGATGGAGTGTGACCTGAGAGTTCTAAGATGAAATAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCTCAGTGATGGAGTGTGACCTGAGAGTTCTAAGATGAAATAAAT  700

seq1  CCTTTCTTCCAAAGGTACTGTTGGTCATGGTGTTTATCACATCAATAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTCCAAAGGTACTGTTGGTCATGGTGTTTATCACATCAATAGGA  750

seq1  ACCCTAAGACAGGAAATAAAATGGAAAGTGGATTTTCTGAATCATTGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAAGACAGGAAATAAAATGGAAAGTGGATTTTCTGAATCATTGGAT  800

seq1  TGCCCTCTTTAGGTCACTTGGATATTACTAGGCTGTTCACCAGGTTATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTTTAGGTCACTTGGATATTACTAGGCTGTTCACCAGGTTATAT  850

seq1  CATCCTCTAGATCAT-GGAATTGAGATAAGCATATACTAGGGACGCACAG  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CATCCTCTAGATCATGGGAATTGAGATAAGCATATACTAGGGACGCACAG  900

seq1  CCCTGTCCTCTTTCTCAAAGATGATTTACTAGATGAGCGTTAGTGAGACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCCTCTTTCTCAAAGATGATTTACTAGATGAGCGTTAGTGAGACA  950

seq1  TTTTTCTTCTAAGTATATATCCTTGAATATTTACATTATTATATAATGTA  999
      |||||||||| ||||||||||||||||||||||||||||||| | |||||
seq2  TTTTTCTTCT-AGTATATATCCTTGAATATTTACATTATTAT-TTATGTA  998

seq1  CTACATTATACAAATAAGGTGT-AAGGTTTATTAATATCAGCTAAGTTGT  1048
      |||||||||||||||| ||||| |||||||||| ||||||||||||||||
seq2  CTACATTATACAAATAGGGTGTAAAGGTTTATT-ATATCAGCTAAGTTGT  1047

seq1  TTCTGCAGAGAGATGCGGGGAGGGTTAAAGGAAGGAATCACGTTCAACTA  1098
      |||||||   |||||||||||  | | |||||||||||||   |||||||
seq2  TTCTGCAAGAAGATGCGGGGAAAGGTTAAGGAAGGAATCAACGTCAACTA  1097

seq1  ACAGCTCCTCTCTCT  1113
      ||||||||| |||||
seq2  ACAGCTCCT-TCTCT  1111