BAC Information

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BAC

Clone NameB6Ng01-166N23
Chromosome3 (Build37)
Map Location 53,344,586 - 53,515,141
singlet/doubletdoublet
Overlap geneFrem2, Ppia-ps3_416.1, LOC621155
Upstream geneLOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3
Downstream geneUfm1, EG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166N23.bB6Ng01-166N23.g
ACCDH958522DH958523
length6291,102
definitionDH958522|Mus musculus domesticus DNA, BAC clone: B6Ng01-166N23, 5' end.DH958523|Mus musculus domesticus DNA, BAC clone: B6Ng01-166N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,344,586 - 53,345,214)(53,514,047 - 53,515,141)
sequence
gaattctttgtactaagtaatacaaatacttaagaaaaacacaattctcc
attttgatctcatcttgattatgaaccaaacaaggaaagcccttggtgca
ctaataaacagtatttttactatgtgtgtgcagtgcccacagaggccaga
agagggcattggatcttctggaacttgagctacagatggctgtgagccac
cacgttggtgctgggaactgtacccaggtcctgtccaagagcagccagcg
ctttttcctgctgaaccatctctctggcctgtgtatatatgggaccatct
cacttacctgtgtctctgccaccatattttcatctggttttaggtgaaca
gtgaaggcctccctcatctctctcaccccgtcgaagattacttcaatttc
aacagtgtgttgggtttctccctccttaaactcgatttctacaaacacaa
agtcactaatttaatcttttacatatgaacctgagatcttcttggactgt
ggtttatatcaaggacattttacactgtggtccagtacatcagtgtgtgc
ttacttgaagggagtcaaacctaactgataattcattgctattatctgtc
ctattctccctccgccgtgtgtgtgtgtg
gaattctcggctccatctctttcctgacatcggcttgtgagtattatgtc
cctaagtaatggatactaaaattcagccctattttatgggcatcttccat
gaatcgtggaagccagaccttcagatgtgcacaggacaggtaaaaattct
tgactaaatagaaattctgttgtggcaaagaatcacagtaaagaaacacc
aatgcaaacagtggcaggtttaaccgtgaggcatcaggccacatcacaat
agacctgcacaagtggtcatgtgctccgaggtctggatcgacattctttc
acagggtttgcatagcagagatttacactaagatgcataacagtaacaaa
attgcagttatgaagtagcagcaaaaataactgtggttggggtcaccagg
acacaagggtgacagcattggaaagttgagaaccattggtcttcaaacac
ccactctatccattctctgggtacatatctgctgtctgggaatcaacccc
tgggggaaggtatgtgtccatcaggagtccagagggctggggtgtgtgtc
tgagcattactgcagagaggatctgatgtcgaaaagggaaggctgcagtc
ttcctctatttttagattcacttaaggaggcatagacattttgctatttg
gctactttataactctgttgggggtagaaattagcttatagaaacacaga
aaacaaaataataatctcctattgcaatacaaatgacctttttttttaaa
aaatagttttaattaaaatatagttacataattccctcttctttttcatc
cacacacacacttgcctgcccacttttctcaaattcttggcctttttctc
tttattattattttaaagcaatcattgatatttttgatctttcaccctgt
agagacatgagtttgacaattttctctgtgaaacatttggctagctttgc
atttattaataacattatcttagtacttctgactgtatgatgtattcatt
agacatcttacttggcctcttttcgggtcctcttctaagcaaattattta
cttgttttacaagggccatgaatttatcatcggtgctattcatttagatt
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_53344586_53345214
seq2: B6Ng01-166N23.b_45_673

seq1  GAATTCTTTGTACTAAGTAATACAAATACTTAAGAAAAACACAATTCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTACTAAGTAATACAAATACTTAAGAAAAACACAATTCTCC  50

seq1  ATTTTGATCTCATCTTGATTATGAACCAAACAAGGAAAGCCCTTGGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATCTCATCTTGATTATGAACCAAACAAGGAAAGCCCTTGGTGCA  100

seq1  CTAATAAACAGTATTTTTACTATGTGTGTGCAGTGCCCACAGAGGCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAACAGTATTTTTACTATGTGTGTGCAGTGCCCACAGAGGCCAGA  150

seq1  AGAGGGCATTGGATCTTCTGGAACTTGAGCTACAGATGGCTGTGAGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCATTGGATCTTCTGGAACTTGAGCTACAGATGGCTGTGAGCCAC  200

seq1  CACGTTGGTGCTGGGAACTGTACCCAGGTCCTGTCCAAGAGCAGCCAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTGGTGCTGGGAACTGTACCCAGGTCCTGTCCAAGAGCAGCCAGCG  250

seq1  CTTTTTCCTGCTGAACCATCTCTCTGGCCTGTGTATATATGGGACCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCTGCTGAACCATCTCTCTGGCCTGTGTATATATGGGACCATCT  300

seq1  CACTTACCTGTGTCTCTGCCACCATATTTTCATCTGGTTTTAGGTGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACCTGTGTCTCTGCCACCATATTTTCATCTGGTTTTAGGTGAACA  350

seq1  GTGAAGGCCTCCCTCATCTCTCTCACCCCGTCGAAGATTACTTCAATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGCCTCCCTCATCTCTCTCACCCCGTCGAAGATTACTTCAATTTC  400

seq1  AACAGTGTGTTGGGTTTCTCCCTCCTTAAACTCGATTTCTACAAACACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGTGTTGGGTTTCTCCCTCCTTAAACTCGATTTCTACAAACACAA  450

seq1  AGTCACTAATTTAATCTTTTACATATGAACCTGAGATCTTCTTGGACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTAATTTAATCTTTTACATATGAACCTGAGATCTTCTTGGACTGT  500

seq1  GGTTTATATCAAGGACATTTTACACTGTGGTCCAGTACATCAGTGTGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATATCAAGGACATTTTACACTGTGGTCCAGTACATCAGTGTGTGC  550

seq1  TTACTTGAAGGGAGTCAAACCTAACTGATAATTCATTGCTATTATCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGAAGGGAGTCAAACCTAACTGATAATTCATTGCTATTATCTGTC  600

seq1  CTATTCTCCCTCCGCCGTGTGTGTGTGTG  629
      |||||||||||||||||||||||||||||
seq2  CTATTCTCCCTCCGCCGTGTGTGTGTGTG  629

seq1: chr3_53514047_53515141
seq2: B6Ng01-166N23.g_69_1170 (reverse)

seq1  CAAATCTAAATG-ATAGCA-CGATGAT-AATTCATGG-CCTTGTAAAAC-  45
      |||||||||||| |||||| ||||||| ||||||||| ||||||||||| 
seq2  CAAATCTAAATGAATAGCACCGATGATAAATTCATGGCCCTTGTAAAACA  50

seq1  AGTAATATATTTGCTTAAGAAGAGGACCCGAAAAGAGG-CAAGT-AGATG  93
      |||||   |||||||| ||||||||||||||||||||| ||||| |||||
seq2  AGTAAATAATTTGCTT-AGAAGAGGACCCGAAAAGAGGCCAAGTAAGATG  99

seq1  TCTAATGAATACATCATACAGTCAGAAGTACTAAGATAATGTTATTAATA  143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGAATACATCATACAGTCAGAAGTACTAAGATAATGTTATTAATA  149

seq1  AATGCAAAGCTAG-CAAATGTTTCACAGAGAAAATTGTCAAACTCATGTC  192
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATGCAAAGCTAGCCAAATGTTTCACAGAGAAAATTGTCAAACTCATGTC  199

seq1  TTCTACAGGGTGAAAGATCAAAAATATCAATGATTGCTTTAAAATAATAA  242
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TCTACAGGGTGAAAGATCAAAAATATCAATGATTGCTTTAAAATAATAA  248

seq1  TAAAGAGAAAAAGGCCAAGAATTTGAGAAAAGTGGGCAGGCAAGTGTGTG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAAAAAGGCCAAGAATTTGAGAAAAGTGGGCAGGCAAGTGTGTG  298

seq1  TGTGGATGAAAAAGAAGAGGGAATTATGTAACTATATTTTAATTAAAACT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATGAAAAAGAAGAGGGAATTATGTAACTATATTTTAATTAAAACT  348

seq1  ATTTTTT-AAAAAAAAGGTCATTTGTATTGCAATAGGAGATTATTATTTT  391
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAAAAAAAAGGTCATTTGTATTGCAATAGGAGATTATTATTTT  398

seq1  GTTTTCTGTGTTTCTATAAGCTAATTTCTACCCCCAACAGAGTTATAAAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGTGTTTCTATAAGCTAATTTCTACCCCCAACAGAGTTATAAAG  448

seq1  TAGCCAAATAGCAAAATGTCTATGCCTCCTTAAGTGAATCTAAAAATAGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAAATAGCAAAATGTCTATGCCTCCTTAAGTGAATCTAAAAATAGA  498

seq1  GGAAGACTGCAGCCTTCCCTTTTCGACATCAGATCCTCTCTGCAGTAATG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACTGCAGCCTTCCCTTTTCGACATCAGATCCTCTCTGCAGTAATG  548

seq1  CTCAGACACACACCCCAGCCCTCTGGACTCCTGATGGACACATACCTTCC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACACACACCCCAGCCCTCTGGACTCCTGATGGACACATACCTTCC  598

seq1  CCCAGGGGTTGATTCCCAGACAGCAGATATGTACCCAGAGAATGGATAGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGGTTGATTCCCAGACAGCAGATATGTACCCAGAGAATGGATAGA  648

seq1  GTGGGTGTTTGAAGACCAATGGTTCTCAACTTTCCAATGCTGTCACCCTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGTTTGAAGACCAATGGTTCTCAACTTTCCAATGCTGTCACCCTT  698

seq1  GTGTCCTGGTGACCCCAACCACAGTTATTTTTGCTGCTACTTCATAACTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTGGTGACCCCAACCACAGTTATTTTTGCTGCTACTTCATAACTG  748

seq1  CAATTTTGTTACTGTTATGCATCTTAGTGTAAATCTCTGCTATGCAAACC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGTTACTGTTATGCATCTTAGTGTAAATCTCTGCTATGCAAACC  798

seq1  CTGTGAAAGAATGTCGATCCAGACCTCGGAGCACATGACCACTTGTGCAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAAGAATGTCGATCCAGACCTCGGAGCACATGACCACTTGTGCAG  848

seq1  GTCTATTGTGATGTGGCCTGATGCCTCACGGTTAAACCTGCCACTGTTTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTGTGATGTGGCCTGATGCCTCACGGTTAAACCTGCCACTGTTTG  898

seq1  CATTGGTGTTTCTTTACTGTGATTCTTTGCCACAACAGAATTTCTATTTA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTGTTTCTTTACTGTGATTCTTTGCCACAACAGAATTTCTATTTA  948

seq1  GTCAAGAATTTTTACCTGTCCTGTGCACATCTGAAGGTCTGGCTTCCACG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGAATTTTTACCTGTCCTGTGCACATCTGAAGGTCTGGCTTCCACG  998

seq1  ATTCATGGAAGATGCCCATAAAATAGGGCTGAATTTTAGTATCCATTACT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGGAAGATGCCCATAAAATAGGGCTGAATTTTAGTATCCATTACT  1048

seq1  TAGGGACATAATACTCACAAGCCGATGTCAGGAAAGAGATGGAGCCGAGA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACATAATACTCACAAGCCGATGTCAGGAAAGAGATGGAGCCGAGA  1098

seq1  ATTC  1095
      ||||
seq2  ATTC  1102