BAC Information

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BAC

Clone NameB6Ng01-168A18
Chromosome4 (Build37)3 (Build37)
Map Location 79,297,830 - 79,298,96741,059,322 - 41,059,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040026, LOC100040036, LOC667922
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168A18.bB6Ng01-168A18.g
ACCDH959387DH959388
length1,135515
definitionDH959387|Mus musculus domesticus DNA, BAC clone: B6Ng01-168A18, 5' end.DH959388|Mus musculus domesticus DNA, BAC clone: B6Ng01-168A18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,297,830 - 79,298,967)(41,059,322 - 41,059,737)
sequence
gaattcatgcctgttattgcagtggaattgtgggccttgcattctctctc
aacttctctaggacaataatttggtaaaatatttcaaaccttaaataaga
tttgggagactttgggaatcttcacttctaaaccattccattgttacctg
tggttgctaatgacattctctagaaggaatttgttcttccatccagtact
gcaacttctgtagcttctcctcaaatcactcctttccctttcccctgatg
tttttaaatacaaaaatgaaaggaaaatggttgggcgaccagagttgata
tatctaggagaagttggaggaaggggaaggttgactaaaatgtattgtat
gaaaatttcaaaaagcagctcagtttgtctggatttgtgtattgttcata
taaactacaagttattagagttgcctcatgtagaataatcactctcaatg
atatgttcatttatgaaaatatttcacagatcctactctatgtttctttt
atttgttttaagttccctccacaatattatggtaagctttccttaaagta
ttcttgagacaggtgacacataagaaaggtactgaagaaatgatgaggaa
tattaagttgttaaatgagagtttttgctcaattgattttcttttcatgc
ctgagcacagatatttatatcctactgtcttctttaagtggagagaggat
cgacagataaagggtgcacattcattccaactgcctcttgtggtcctggg
tagatgaatgtctatttctaccttgtcttccctgtgataaacggaatttc
atgagtgtgaaaccttttccagtctcagtgctagattgctgaaatgtagt
tgcttactactttgagattttcttttccccccattttattaaaagtagat
tctgtattattatatcatgactatagtttccataagtttaagcataacca
ccatatttaatttagagaggcacccaacagacagaaagagtcccagagca
ggcacacaaatcagagaaccccacatactccttacaggagtcccgtaaca
tactgagctgacagctatgctattatacacaaaggactttgttacagaac
ttgtgtaggccctctgcttatcatttcagtctctg
gaattctttgtttagctctgagccccatttttaatggggttatatgattt
tctggagtccaccttctttatatatatatatatatatatatatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tacccctatatatatatatatatatatatatatataaaatattagtcccc
tatctgatttaggataggtaaagattctttttaatctgttggtggccttt
ttgtcttattgatggtgttttttgccttacaaaagttttgcaattatatg
aggtcccatttatcgattctcgatcttacaggacaagccacttctgttct
attcaggaatttttcccctgtgcccatatctttgaggctttcccccactt
tctcctctataagtttcagtgtctctggttttatgtagagttccttgatc
cagttagatttgaccttagtacagagagataggaatggatcattcacatt
cttctacatgataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_79297830_79298967
seq2: B6Ng01-168A18.b_43_1177 (reverse)

seq1  CAGAGACTGAAATGATAAGCAGAGGGCCTACAC-AGGTCTGTATACAAAG  49
      ||||||||||||||||||||||||||||||||| || |||||| ||||||
seq2  CAGAGACTGAAATGATAAGCAGAGGGCCTACACAAGTTCTGTA-ACAAAG  49

seq1  TCCTCTGTGTAT-ATAGCATAGCTGTCAGCTCAGTATGTTTACGGGACTC  98
      |||| ||||||| ||||||||||||||||||||||||| |||||||||||
seq2  TCCTTTGTGTATAATAGCATAGCTGTCAGCTCAGTATG-TTACGGGACTC  98

seq1  CTGT-ATGAGTATGTGTGGTTCTCTGATTTGTGTGCCTGCTCTTGGGACT  147
      |||| | ||||||||| ||||||||||||||||||||||||| |||||||
seq2  CTGTAAGGAGTATGTGGGGTTCTCTGATTTGTGTGCCTGCTC-TGGGACT  147

seq1  CTTTCTGTCTGTTGGGTTGCCTTCTCTAAATTAAATATGGTGGTTATTGC  197
      |||||||||||||||| |||| |||||||||||||||||||||||| |||
seq2  CTTTCTGTCTGTTGGG-TGCC-TCTCTAAATTAAATATGGTGGTTA-TGC  194

seq1  TTAAACTTATGGAAACTATAGTCATGATATAATAATACAGAATCTACTTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTATGGAAACTATAGTCATGATATAATAATACAGAATCTACTTT  244

seq1  TAATAAAATGGGGGGAAAAGAAAATCTCAAAGTAGTAAGCAACTACATTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAATGGGGGGAAAAGAAAATCTCAAAGTAGTAAGCAACTACATTT  294

seq1  CAGCAATCTAGCACTGAGACTGGAAAAGGTTTCACACTCATGAAATTCCG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATCTAGCACTGAGACTGGAAAAGGTTTCACACTCATGAAATTCCG  344

seq1  TTTATCACAGGGAAGACAAGGTAGAAATAGACATTCATCTACCCAGGACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACAGGGAAGACAAGGTAGAAATAGACATTCATCTACCCAGGACC  394

seq1  ACAAGAGGCAGTTGGAATGAATGTGCACCCTTTATCTGTCGATCCTCTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGGCAGTTGGAATGAATGTGCACCCTTTATCTGTCGATCCTCTCT  444

seq1  CCACTTAAAGAAGACAGTAGGATATAAATATCTGTGCTCAGGCATGAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAAAGAAGACAGTAGGATATAAATATCTGTGCTCAGGCATGAAAA  494

seq1  GAAAATCAATTGAGCAAAAACTCTCATTTAACAACTTAATATTCCTCATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCAATTGAGCAAAAACTCTCATTTAACAACTTAATATTCCTCATC  544

seq1  ATTTCTTCAGTACCTTTCTTATGTGTCACCTGTCTCAAGAATACTTTAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCAGTACCTTTCTTATGTGTCACCTGTCTCAAGAATACTTTAAG  594

seq1  GAAAGCTTACCATAATATTGTGGAGGGAACTTAAAACAAATAAAAGAAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTTACCATAATATTGTGGAGGGAACTTAAAACAAATAAAAGAAAC  644

seq1  ATAGAGTAGGATCTGTGAAATATTTTCATAAATGAACATATCATTGAGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTAGGATCTGTGAAATATTTTCATAAATGAACATATCATTGAGAG  694

seq1  TGATTATTCTACATGAGGCAACTCTAATAACTTGTAGTTTATATGAACAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTCTACATGAGGCAACTCTAATAACTTGTAGTTTATATGAACAA  744

seq1  TACACAAATCCAGACAAACTGAGCTGCTTTTTGAAATTTTCATACAATAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAATCCAGACAAACTGAGCTGCTTTTTGAAATTTTCATACAATAC  794

seq1  ATTTTAGTCAACCTTCCCCTTCCTCCAACTTCTCCTAGATATATCAACTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTCAACCTTCCCCTTCCTCCAACTTCTCCTAGATATATCAACTC  844

seq1  TGGTCGCCCAACCATTTTCCTTTCATTTTTGTATTTAAAAACATCAGGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCGCCCAACCATTTTCCTTTCATTTTTGTATTTAAAAACATCAGGGG  894

seq1  AAAGGGAAAGGAGTGATTTGAGGAGAAGCTACAGAAGTTGCAGTACTGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAAGGAGTGATTTGAGGAGAAGCTACAGAAGTTGCAGTACTGGA  944

seq1  TGGAAGAACAAATTCCTTCTAGAGAATGTCATTAGCAACCACAGGTAACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAACAAATTCCTTCTAGAGAATGTCATTAGCAACCACAGGTAACA  994

seq1  ATGGAATGGTTTAGAAGTGAAGATTCCCAAAGTCTCCCAAATCTTATTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATGGTTTAGAAGTGAAGATTCCCAAAGTCTCCCAAATCTTATTTA  1044

seq1  AGGTTTGAAATATTTTACCAAATTATTGTCCTAGAGAAGTTGAGAGAGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGAAATATTTTACCAAATTATTGTCCTAGAGAAGTTGAGAGAGAA  1094

seq1  TGCAAGGCCCACAATTCCACTGCAATAACAGGCATGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGCCCACAATTCCACTGCAATAACAGGCATGAATTC  1135

seq1: chr3_41059322_41059737
seq2: B6Ng01-168A18.g_71_584 (reverse)

seq1  GTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTA  50
      ||||||||||||||||||| ||| ||||||| |||||||||  |||||||
seq2  GTTATCATGTAGAAGAATGTGAA-TGATCCATTCCTATCTCTCTGTACTA  49

seq1  AGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTG  100
      ||||||||||||| ||||||||||||| | ||||||||||||||||||||
seq2  AGGTCAAATCTAACTGGATCAAGGAACTCTACATAAAACCAGAGACACTG  99

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGG  150
      |||||||||||||||||||||||| |||||||  ||||||||| ||||||
seq2  AAACTTATAGAGGAGAAAGTGGGGGAAAGCCTCAAAGATATGGGCACAGG  149

seq1  GGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAA  200
      ||||||||||||| ||||||||| | |||||||| ||||||||| |||||
seq2  GGAAAAATTCCTGAATAGAACAGAAGTGGCTTGTCCTGTAAGATCGAGAA  199

seq1  TAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGAC  250
      | || ||||||||||||||  || |||||| ||| || ||||||||| ||
seq2  TCGATAAATGGGACCTCATATAATTGCAAAACTTTTGTAAGGCAAAAAAC  249

seq1  ACCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTAC  299
      ||| ||||||||||||||||| ||||||||||||   |||| ||||||||
seq2  ACCATCAATAAGACAAAAAGGCCACCAACAGATT-AAAAAGAATCTTTAC  298

seq1  CTATCCTAAATCAGATAGGGGACTAATAT---------------------  328
      |||||||||||||||||||||||||||||                     
seq2  CTATCCTAAATCAGATAGGGGACTAATATTTTATATATATATATATATAT  348

seq1  --------------------------------------------------  328
                                                        
seq2  ATATATATATAGGGGTATATATATATATATATATATATATATATATATAT  398

seq1  -----------------------------CCAATATATATCAAGAACTCA  349
                                      ||||||||  | |  | |
seq2  ATATATATATATATATATATATATATATATATATATATATATATATATAA  448

seq1  AGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  399
      |||||||||| |||||||||||| ||||||||||| ||||||||||||||
seq2  AGAAGGTGGACTCCAGAAAATCATATAACCCCATT-AAAAATGGGGCTCA  497

seq1  GAGCTAAACAAAGAATT  416
      |||||||||||||||||
seq2  GAGCTAAACAAAGAATT  514