BAC Information

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BAC

Clone NameB6Ng01-168D01
Chromosome3 (Build37)
Map Location 83,564,325 - 83,703,281
singlet/doubletdoublet
Overlap geneSfrp2, LOC633522, Tlr2, D930015E06Rik
Upstream geneEG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091
Downstream geneMnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168D01.bB6Ng01-168D01.g
ACCDH959495DH959496
length1,130584
definitionDH959495|Mus musculus domesticus DNA, BAC clone: B6Ng01-168D01, 5' end.DH959496|Mus musculus domesticus DNA, BAC clone: B6Ng01-168D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,702,144 - 83,703,281)(83,564,325 - 83,564,908)
sequence
gaattcagcacctcaccaacagtttttctcccatccctcacagaaaacat
gaattataccaatggcttcccctgctcctcgaaagttcagacggacttca
ttggccacagcaccccctctacctggaacactccggccagcatgcccgct
gcctggggccatgccagtctcgtcaactctccagtgagtgtcgcccttcc
tgttcccctgcactgctctctcttcctgtgctctgctcgcttcagcacag
agtgcaggtcaggcagactgatgggattcatatacaagagtagtggccgc
cttctgaaggctgtaatgtggagacaggcaggaagtctgtgtcacggcct
tcagtggcctccgcggccttcagtggggttagaggtgaaagaggggctct
gcagctgtctgtagtgcccacactgtctctcctcacacccacactacaca
acattgtctctcctcagacccacaccacacaacactgtctccccttgtgc
ccacaccacacatttcttcacgggagacatttgactgaaccctttagatt
gcaaatagacttaacagatcagatgaaaatgtcatagcaatgtttgggat
ggtttaacagctctcaggtaggcaggtagacatgacatcatggctgtgtc
ccctaggctatctcttcagtctcagtgttttgtctggaaagccccttctt
ggtttctaacctttggttctcttgtccacctttgtttccgcttcagtcct
acctcacgagcacccgaagcttgtctcccatgtctggactctttggttcc
atctgggccccacaaagtgaagtgtatgaaacctgctgccccatcagccc
tgccacagagcatgcaacccacatgggaaaccaggtcatgtgcaaggagt
actacctgggctttaacccgttccgtgcctacatgaacctggacatatgg
actagcacagcaaatcgcaatgcaaacttcccctgtcagagactccagct
actgtggaacatgtgaggactgagctttgagcaatgtgataacggcctgt
gttttgattcctagcgtaaactggttgtcgcgaagagtacaacattggtg
aattttgggcacttttaaataaaaaataaa
gaattcagggagaccaacagctctccacgctgaggtccatctctgggagg
agcacgtgctcacactcgggtctcttctgcccatggggcgctcctatgtg
atgcctccttgctattttctgatagccagatagccacagctctcacctga
gtgagcacctgtttaacctgtggtccctgctattcacagcagacaatcaa
gccagcctttctttccaggctctgggctggcaaacaacctcgagccttgg
gcttttgcttttccggtcggcatttttttaatgtgagtgattgggtgatg
cttaaagagtctcatcagcagtcgcaatcccatcagtgagcagtgacctc
ctgggatcccagagaacagcagggcaagctgggtaggcagcagggcagag
acaagggaaggtgccagtaagcctttaattaaggacggaatgcaggctag
gtctacactgttgtcctgggtttcaaatttttcaacccccagataaagga
attgtgagtggtggggctaaggtgatggcttaggttataactaaaaggct
ttgtgttgtgaggaatcgggtgggggggaggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83702144_83703281
seq2: B6Ng01-168D01.b_44_1173 (reverse)

seq1  TTTA-TTTTTATATAAAAGTGCCAAAATATCCACCAATGTTGTACTCTAT  49
      |||| ||||||| |||||||||| ||| || ||||||||||||||||| |
seq2  TTTATTTTTTATTTAAAAGTGCCCAAA-ATTCACCAATGTTGTACTCT-T  48

seq1  CGCGACAACCAGTTTACGCTAGGAATCAAAACACAAGGCCCTTTATTCAC  99
      |||||||||||||||||||||||||||||||||| ||||| ||   ||||
seq2  CGCGACAACCAGTTTACGCTAGGAATCAAAACAC-AGGCCGTT--ATCAC  95

seq1  ATTGCTCAAAGCTCAGTCCCTCACATGTTCCCACAGTAGCTGGAGTCTCT  149
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  ATTGCTCAAAGCTCAGT-CCTCACATGTT-CCACAGTAGCTGGAGTCTCT  143

seq1  GGACAGGGGGAAGTTTGCATTGCGATTTGCTGTGCTAGTCCATATGTCCA  199
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  -GACA-GGGGAAGTTTGCATTGCGATTTGCTGTGCTAGTCCATATGTCCA  191

seq1  GGTTCATGTAGGCACGGAACGGGTTAAAGCCCAGGTAGTACTCCTTGCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATGTAGGCACGGAACGGGTTAAAGCCCAGGTAGTACTCCTTGCAC  241

seq1  ATGACCTGGTTTTCCATGTGGGTTGCATGCTCTGTGGCAGGGCTGATGGG  299
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGACCTGGTTTCCCATGTGGGTTGCATGCTCTGTGGCAGGGCTGATGGG  291

seq1  GCAGCAGGTTTCATACACTTCACTTTGTGGGGCCCAGATGGAACCAAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGGTTTCATACACTTCACTTTGTGGGGCCCAGATGGAACCAAAGA  341

seq1  GTCCAGACATGGGAGACAAGCTTCGGGTGCTCGTGAGGTAGGACTGAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGACATGGGAGACAAGCTTCGGGTGCTCGTGAGGTAGGACTGAAGC  391

seq1  GGAAACAAAGGTGGACAAGAGAACCAAAGGTTAGAAACCAAGAAGGGGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAAAGGTGGACAAGAGAACCAAAGGTTAGAAACCAAGAAGGGGCT  441

seq1  TTCCAGACAAAACACTGAGACTGAAGAGATAGCCTAGGGGACACAGCCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGACAAAACACTGAGACTGAAGAGATAGCCTAGGGGACACAGCCAT  491

seq1  GATGTCATGTCTACCTGCCTACCTGAGAGCTGTTAAACCATCCCAAACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCATGTCTACCTGCCTACCTGAGAGCTGTTAAACCATCCCAAACAT  541

seq1  TGCTATGACATTTTCATCTGATCTGTTAAGTCTATTTGCAATCTAAAGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGACATTTTCATCTGATCTGTTAAGTCTATTTGCAATCTAAAGGG  591

seq1  TTCAGTCAAATGTCTCCCGTGAAGAAATGTGTGGTGTGGGCACAAGGGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCAAATGTCTCCCGTGAAGAAATGTGTGGTGTGGGCACAAGGGGA  641

seq1  GACAGTGTTGTGTGGTGTGGGTCTGAGGAGAGACAATGTTGTGTAGTGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGTTGTGTGGTGTGGGTCTGAGGAGAGACAATGTTGTGTAGTGTG  691

seq1  GGTGTGAGGAGAGACAGTGTGGGCACTACAGACAGCTGCAGAGCCCCTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGAGGAGAGACAGTGTGGGCACTACAGACAGCTGCAGAGCCCCTCT  741

seq1  TTCACCTCTAACCCCACTGAAGGCCGCGGAGGCCACTGAAGGCCGTGACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTCTAACCCCACTGAAGGCCGCGGAGGCCACTGAAGGCCGTGACA  791

seq1  CAGACTTCCTGCCTGTCTCCACATTACAGCCTTCAGAAGGCGGCCACTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTCCTGCCTGTCTCCACATTACAGCCTTCAGAAGGCGGCCACTAC  841

seq1  TCTTGTATATGAATCCCATCAGTCTGCCTGACCTGCACTCTGTGCTGAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTATATGAATCCCATCAGTCTGCCTGACCTGCACTCTGTGCTGAAG  891

seq1  CGAGCAGAGCACAGGAAGAGAGAGCAGTGCAGGGGAACAGGAAGGGCGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCAGAGCACAGGAAGAGAGAGCAGTGCAGGGGAACAGGAAGGGCGAC  941

seq1  ACTCACTGGAGAGTTGACGAGACTGGCATGGCCCCAGGCAGCGGGCATGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTGGAGAGTTGACGAGACTGGCATGGCCCCAGGCAGCGGGCATGC  991

seq1  TGGCCGGAGTGTTCCAGGTAGAGGGGGTGCTGTGGCCAATGAAGTCCGTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGGAGTGTTCCAGGTAGAGGGGGTGCTGTGGCCAATGAAGTCCGTC  1041

seq1  TGAACTTTCGAGGAGCAGGGGAAGCCATTGGTATAATTCATGTTTTCTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTCGAGGAGCAGGGGAAGCCATTGGTATAATTCATGTTTTCTGT  1091

seq1  GAGGGATGGGAGAAAAACTGTTGGTGAGGTGCTGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATGGGAGAAAAACTGTTGGTGAGGTGCTGAATTC  1130

seq1: chr3_83564325_83564908
seq2: B6Ng01-168D01.g_66_649

seq1  GAATTCAGGGAGACCAACAGCTCTCCACGCTGAGGTCCATCTCTGGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGAGACCAACAGCTCTCCACGCTGAGGTCCATCTCTGGGAGG  50

seq1  AGCACGTGCTCACACTCGGGTCTCTTCTGCCCATGGGGCGCTCCTATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGTGCTCACACTCGGGTCTCTTCTGCCCATGGGGCGCTCCTATGTG  100

seq1  ATGCCTCCTTGCTATTTTCTGATAGCCAGATAGCCACAGCTCTCACCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCCTTGCTATTTTCTGATAGCCAGATAGCCACAGCTCTCACCTGA  150

seq1  GTGAGCACCTGTTTAACCTGTGGTCCCTGCTATTCACAGCAGACAATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCACCTGTTTAACCTGTGGTCCCTGCTATTCACAGCAGACAATCAA  200

seq1  GCCAGCCTTTCTTTCCAGGCTCTGGGCTGGCAAACAACCTCGAGCCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTTTCTTTCCAGGCTCTGGGCTGGCAAACAACCTCGAGCCTTGG  250

seq1  GCTTTTGCTTTTCCGGTCGGCATTTTTTTAATGTGAGTGATTGGGTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGCTTTTCCGGTCGGCATTTTTTTAATGTGAGTGATTGGGTGATG  300

seq1  CTTAAAGAGTCTCATCAGCAGTCGCAATCCCATCAGTGAGCAGTGACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGAGTCTCATCAGCAGTCGCAATCCCATCAGTGAGCAGTGACCTC  350

seq1  CTGGGATCCCAGAGAACAGCAGGGCAAGCTGGGTAGGCAGCAGGGCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATCCCAGAGAACAGCAGGGCAAGCTGGGTAGGCAGCAGGGCAGAG  400

seq1  ACAAGGGAAGGTGCCAGTAAGCCTTTAATTAAGGACGGAATGCAGGCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGAAGGTGCCAGTAAGCCTTTAATTAAGGACGGAATGCAGGCTAG  450

seq1  GTCTACACTGTTGTCCTGGGTTTCAAATTTTTCAACCCCCAGATAAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACACTGTTGTCCTGGGTTTCAAATTTTTCAACCCCCAGATAAAGGA  500

seq1  ATTGTGAGTGGTGGGGCTAAGGTGATGGCTTAGGTTATAACTAAAAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAGTGGTGGGGCTAAGGTGATGGCTTAGGTTATAACTAAAAGGCT  550

seq1  TTGTGTTGTGAGGAATCGGGTGGGGGGGAGGATG  584
      ||||||||||||||||||||||||||||||||||
seq2  TTGTGTTGTGAGGAATCGGGTGGGGGGGAGGATG  584