BAC Information

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BAC

Clone NameB6Ng01-168D12
Chromosome3 (Build37)
Map Location 14,546,578 - 14,701,700
singlet/doubletdoublet
Overlap geneLrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507
Upstream gene0710005M24Rik, LOC100041679, LOC100041667, LOC100039882, EG622229, LOC668062, Slc7a12, LOC668068
Downstream geneCar1, LOC100041785, Car3, Car2, EG634323, LOC100039985, LOC751864, Sirpb1, LOC668101, LOC100038947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168D12.bB6Ng01-168D12.g
ACCDH959514DH959515
length1,1351,174
definitionDH959514|Mus musculus domesticus DNA, BAC clone: B6Ng01-168D12, 5' end.DH959515|Mus musculus domesticus DNA, BAC clone: B6Ng01-168D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,546,578 - 14,547,722)(14,700,517 - 14,701,700)
sequence
gaattcttctagtgatccatgtataaaatttcatgtattaaaaaaaaatc
attcattcctttttagttagtatatgcccatgaatttctttttattctaa
ctactgatagactctgtttactctagtatattgtatcaattttaaactgt
taagtgccattgggtaattaaagcattattttcaaatttttctattatat
gatcatagtgaatttcatcatgaatgtgttaaacactacacacatagaat
gattatcttttttttaaactcttaagactctaaatagtgaatcagcaaat
cacatcccttataaacttcatgaattagctaagttaactattacattttt
tgttaaaacaattatttattatattggtataggtgttttacctgcatata
tgtctgcaccatgtccaggtgcctgctaatgacagaagagggcatccgat
cccctgggactgggttacagatggttatgagttgccatgtgagtgctggg
aattgaacccagtttcgttggaagagtagccagtagggtttactgctgag
ccatctctctagccccttcattaatattttttttaaatactagatatgtg
gctataggtttttgtattgagaaacataaattgtatttttgattattttc
tgccttttattctttgcagttgtaatcgtaaaatgagacagccttacctt
agagatttatatgtaagatcatctttagtaaactgtaataacttacgaga
cttagatgagcagaagactggcgtaattaaagtagacaagaacttctcgg
acaacagcacctaccgggtatgctttagagaattaagaagacttaaaaat
cttagactcagtacaaagtcctagaaagttaaccattttttatgagcaat
aaatgttgtttgtagttttatcagagtgatgaaaattagctaattttacc
cttcccagttcccagattttgtgtactgttactgctttacatttactaca
tcagttgaaatgatgttacattaggaaattgcacttctgtttcccaaact
gatagttctactttgaggcgggatactgacctctcaaataacaaaaaatc
tatgcattttctcaagaaatatttcttaactgtct
gaattcattgtgttattcagccaggccttgagctttggccttctccttag
ctacctgagtagctggaataataggtctgttccatgaagtctggctcact
caagaagcagggcaagcatttgaattagtttttgtttatgcccacagccc
atgtctgttttgtctttttctttttctataccaaggaattacttttattc
cacatttaaacttaatattcattacagtttatttagctgtacagtctgtg
gtttatttttaaaacataataaaaactagaggtttttttccccccctaag
gcactacaaagatagaatttaaaagttttaaaaatcactttagtgtcatt
tgccaggacatgtttgtattgagacagataagaattttgataagtcaatg
aaaatgggttatctaaattttagacataccacttccactatattggtctt
tctctatgtacgttgaagatctgttgctaacgttattcttctaatgttca
tcttaaggctgtttgttactctggtggacctgcctcctggggtcagggct
tttgtagctgaatgttaccctttcacctttaactgccctgtcctccactg
tgtctcttcatcccctgccactctgctataccatcctgtcttgtttgtaa
ctctagttgtattagaagttattttggtcacactctgaaattaatagatt
tactttataatttcagattttgaagtaagattggatttgggttattgtta
tttagttcatatctgagcaaatgctccaaaacatttgaagtcctccaaag
ctgtacatcctgcttccgttctctgtggatgaaggagcccagtctgcact
tgctcagtgttggcaacagtctctccaagaacatctctgtgaggacagga
ccctgatcacttagttctttactactgtgttctctccctttaatgtctgg
aaatatggtgctcaatgttggcagtgagaaccactgaatgatcctttaaa
cctcagctattttattttcataaagagtgacatgcagctacctcagcaag
gctgtctgatctaacttcgggggtgtgggcagagcgatatgtgaccagtg
aatgagcttggctggaaggtgacctcctgaccacttgactagggaagaac
ttcctctcaacctcctgttaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_14546578_14547722
seq2: B6Ng01-168D12.b_46_1180

seq1  GAATTCTTCTAGTGATCCATGTATAAAATTTCATGTATTAAAAAAAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAGTGATCCATGTATAAAATTTCATGTATTAAAAAAAAATC  50

seq1  ATTCATTCCTTTTTAGTTAGTATATGCCCATGAATTTCTTTTTATTCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCCTTTTTAGTTAGTATATGCCCATGAATTTCTTTTTATTCTAA  100

seq1  CTACTGATAGACTCTGTTTACTCTAGTATATTGTATCAATTTTAAACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGATAGACTCTGTTTACTCTAGTATATTGTATCAATTTTAAACTGT  150

seq1  TAAGTGCCATTGGGTAATTAAAGCATTATTTTCAAATTTTTCTATTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCCATTGGGTAATTAAAGCATTATTTTCAAATTTTTCTATTATAT  200

seq1  GATCATAGTGAATTTCATCATGAATGTGTTAAACACTACACACATAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATAGTGAATTTCATCATGAATGTGTTAAACACTACACACATAGAAT  250

seq1  GATTATCTTTTTTTTAAACTCTTAAGACTCTAAATAGTGAATCAGCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCTTTTTTTTAAACTCTTAAGACTCTAAATAGTGAATCAGCAAAT  300

seq1  CACATCCCTTATAAACTTCATGAATTAGCTAAGTTAACTATTACATTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCCTTATAAACTTCATGAATTAGCTAAGTTAACTATTACATTTTT  350

seq1  TGTTAAAACAATTATTTATTATATTGGTATAGGTGTTTTACCTGCATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAACAATTATTTATTATATTGGTATAGGTGTTTTACCTGCATATA  400

seq1  TGTCTGCACCATGTCCAGGTGCCTGCTAATGACAGAAGAGGGCATCCGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCACCATGTCCAGGTGCCTGCTAATGACAGAAGAGGGCATCCGAT  450

seq1  CCCCTGGGACTGGGTTACAGATGGTTATGAGTTGCCATGTGAGTGCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGGACTGGGTTACAGATGGTTATGAGTTGCCATGTGAGTGCTGGG  500

seq1  AATTGAACCCAGTTTCGTTGGAAGAGTAGCCAGTAGGGTTTACTGCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACCCAGTTTCGTTGGAAGAGTAGCCAGTAGGGTTTACTGCTGAG  550

seq1  CCATCTCTCTAGCCCCTTCATTAATATTTTTTTTAAATACTAGATATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCTAGCCCCTTCATTAATATTTTTTTTAAATACTAGATATGTG  600

seq1  GCTATAGGTTTTTGTATTGAGAAACATAAATTGTATTTTTGATTATTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGGTTTTTGTATTGAGAAACATAAATTGTATTTTTGATTATTTTC  650

seq1  TGCCTTTTATTCTTTGCAGTTGTAATCGTAAAATGAGACAGCCTTACCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTTATTCTTTGCAGTTGTAATCGTAAAATGAGACAGCCTTACCTT  700

seq1  AGAGATTTATATGTAAGATCATCTTTAGTAAACTGTAATAACTTACGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTATATGTAAGATCATCTTTAGTAAACTGTAATAACTTACGAGA  750

seq1  CTTAGATGAGCAGAAGACTGGCGTAATTAAAGTAGACAAGAACTTCTCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATGAGCAGAAGACTGGCGTAATTAAAGTAGACAAGAACTTCTCGG  800

seq1  ACAACAGCACCTACCGGGTATGCTTTAGAGAATTAAGAAGACTTAAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGCACCTACCGGGTATGCTTTAGAGAATTAAGAAGACTTAAAAAT  850

seq1  CTTAGACTCAGTACAAAGTCCTAGAAAGTTAACCATTTTTTATGAGCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACTCAGTACAAAGTCCTAGAAAGTTAACCATTTTTTATGAGCAAT  900

seq1  AAATGTTGTTTGTAGTTTTATCAGAGTGATGAAAATTAGCTAATTTTACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGTTTGTAGTTTTATCAGAGTGATGAAAATTAGCTAATTTTACC  950

seq1  CTTCCCAGTTCCCAGATTTTGTGTACTGTTACTGCTTTTACATTTACTAC  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTTCCCAGTTCCCAGATTTTGTGTACTGTTACTGC-TTTACATTTACTAC  999

seq1  ATCAGTTGAAATGATGTTACATTAGGAAAATTGCACTTCCTGTTTCCCAA  1050
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  ATCAGTTGAAATGATGTTACATTAGG-AAATTGCACTT-CTGTTTCCCAA  1047

seq1  ACTGATAGTTCCTACTTTGAGGCGGGATACTGAACCTCTTCAAATAACAA  1100
      |||||||||| ||||||||||||||||||||| ||||| |||||||||||
seq2  ACTGATAGTT-CTACTTTGAGGCGGGATACTG-ACCTC-TCAAATAACAA  1094

seq1  AATAAATCTATGCATTTTCTCAAAGAAATATTCTTTATACTGTCT  1145
      |  |||||||||||||||||| ||||||||||  ||| |||||||
seq2  A--AAATCTATGCATTTTCTC-AAGAAATATTTCTTA-ACTGTCT  1135

seq1: chr3_14700517_14701700
seq2: B6Ng01-168D12.g_70_1243 (reverse)

seq1  CCATTAACAGGAGTGTGAGGGAAGGTTCTTTCTCCTTAGTCCAAATGTGG  50
      |||||||||||||  |||| | | |||||   ||| |||||   | ||||
seq2  CCATTAACAGGAGGTTGAGAGGAAGTTCT---TCCCTAGTC---AAGTGG  44

seq1  TCAGGAGTTCACC-TCCAGCAAAGCTCATTCACATGCTCACATATCCGCT  99
      ||||||| ||||| |||||| |||||||||||| || |||||||| ||||
seq2  TCAGGAGGTCACCTTCCAGCCAAGCTCATTCAC-TGGTCACATAT-CGCT  92

seq1  CTGCACACA-CCCCGGAGTTAGATCAGACAGCCTTGCTGA-GTAGCTTGC  147
      |||| |||| ||||| |||||||||||||||||||||||| ||||| |||
seq2  CTGCCCACACCCCCGAAGTTAGATCAGACAGCCTTGCTGAGGTAGC-TGC  141

seq1  ATGTCACTTCTTTATGAAAATAAAATAGCTGAGGTTTAAAGGAATCATTC  197
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  ATGTCAC-TCTTTATGAAAATAAAATAGCTGAGGTTTAAAGG-ATCATTC  189

seq1  AGTGGTTCTCACTGCCAACATTGAGCACCATTATTTTCCAGACATTAAAG  247
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  AGTGGTTCTCACTGCCAACATTGAGCACCAT--ATTTCCAGACATTAAAG  237

seq1  GGAGAGAACACAGTAGTAAAGAACTAAGTGATCAGGGTCCTGTCCTCACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAACACAGTAGTAAAGAACTAAGTGATCAGGGTCCTGTCCTCACA  287

seq1  GAGGTGTTCTTGGAGAGACTGTTGCCAACACTGAGCAAGTGCAGACTGGG  347
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTTCTTGGAGAGACTGTTGCCAACACTGAGCAAGTGCAGACTGGG  337

seq1  CTCCTTCATCCACAGAGAACGGAAGCAGGATGTACAGCTTTGGAGGACTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCATCCACAGAGAACGGAAGCAGGATGTACAGCTTTGGAGGACTT  387

seq1  CAAATGTTTTGGAGCATTTGCTCAGATATGAACTAAATAACAATAACCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTTTGGAGCATTTGCTCAGATATGAACTAAATAACAATAACCCA  437

seq1  AATCCAATCTTACTTCAAAATCTGAAATTATAAAGTAAATCTATTAATTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAATCTTACTTCAAAATCTGAAATTATAAAGTAAATCTATTAATTT  487

seq1  CAGAGTGTGACCAAAATAACTTCTAATACAACTAGAGTTACAAACAAGAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTGACCAAAATAACTTCTAATACAACTAGAGTTACAAACAAGAC  537

seq1  AGGATGGTATAGCAGAGTGGCAGGGGATGAAGAGACACAGTGGAGGACAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGTATAGCAGAGTGGCAGGGGATGAAGAGACACAGTGGAGGACAG  587

seq1  GGCAGTTAAAGGTGAAAGGGTAACATTCAGCTACAAAAGCCCTGACCCCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTAAAGGTGAAAGGGTAACATTCAGCTACAAAAGCCCTGACCCCA  637

seq1  GGAGGCAGGTCCACCAGAGTAACAAACAGCCTTAAGATGAACATTAGAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGGTCCACCAGAGTAACAAACAGCCTTAAGATGAACATTAGAAG  687

seq1  AATAACGTTAGCAACAGATCTTCAACGTACATAGAGAAAGACCAATATAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACGTTAGCAACAGATCTTCAACGTACATAGAGAAAGACCAATATAG  737

seq1  TGGAAGTGGTATGTCTAAAATTTAGATAACCCATTTTCATTGACTTATCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTGGTATGTCTAAAATTTAGATAACCCATTTTCATTGACTTATCA  787

seq1  AAATTCTTATCTGTCTCAATACAAACATGTCCTGGCAAATGACACTAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTATCTGTCTCAATACAAACATGTCCTGGCAAATGACACTAAAG  837

seq1  TGATTTTTAAAACTTTTAAATTCTATCTTTGTAGTGCCTTAGGGGGGGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTAAAACTTTTAAATTCTATCTTTGTAGTGCCTTAGGGGGGGAA  887

seq1  AAAAACCTCTAGTTTTTATTATGTTTTAAAAATAAACCACAGACTGTACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCTCTAGTTTTTATTATGTTTTAAAAATAAACCACAGACTGTACA  937

seq1  GCTAAATAAACTGTAATGAATATTAAGTTTAAATGTGGAATAAAAGTAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATAAACTGTAATGAATATTAAGTTTAAATGTGGAATAAAAGTAAT  987

seq1  TCCTTGGTATAGAAAAAGAAAAAGACAAAACAGACATGGGCTGTGGGCAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGTATAGAAAAAGAAAAAGACAAAACAGACATGGGCTGTGGGCAT  1037

seq1  AAACAAAAACTAATTCAAATGCTTGCCCTGCTTCTTGAGTGAGCCAGACT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAACTAATTCAAATGCTTGCCCTGCTTCTTGAGTGAGCCAGACT  1087

seq1  TCATGGAACAGACCTATTATTCCAGCTACTCAGGTAGCTAAGGAGAAGGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAACAGACCTATTATTCCAGCTACTCAGGTAGCTAAGGAGAAGGC  1137

seq1  CAAAGCTCAAGGCCTGGCTGAATAACACAATGAATTC  1184
      |||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTCAAGGCCTGGCTGAATAACACAATGAATTC  1174