BAC Information

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BAC

Clone NameB6Ng01-168E05
Chromosome3 (Build37)
Map Location 68,413,632 - 68,450,225
singlet/doubletdoublet
Overlap geneSchip1
Upstream geneGm412, EG208426, EG545531, LOC631379
Downstream geneIl12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4, Arl14, Ppm1l, LOC667309, B3galnt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168E05.bB6Ng01-168E05.g
ACCDH959545DH959546
length1,054860
definitionDH959545|Mus musculus domesticus DNA, BAC clone: B6Ng01-168E05, 5' end.DH959546|Mus musculus domesticus DNA, BAC clone: B6Ng01-168E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,413,632 - 68,414,730)(68,449,366 - 68,450,225)
sequence
gaattcattttacccttctgaaagtgtcctagcccctcaggagggaggac
acataccactgtgactttgtgcagttgtacctgtctgggactttgttttt
cctacataaagcaaggtccccactcataagtaaggtgggcaaagtgcctg
gcacacaacggatgctatcagacggcaactttttatttcataagtaggct
gcttggaaatcgtcagaactcaattaagatgaaaatagatcacatttgac
ctctagctatcttatgcctactatcctaagagggctcgttcttgccttcc
attcatactgaagagtattcctcttgaaaatacattttgcagacattaaa
atcctgtaattccgaattcaattacagggaagtggtcatcagtgaaagaa
attggcactgatgtggaatgagaaccaacagctgtctgaggaatgcaagt
atttatagctctctggagcccaggttaggaagcgggctgacacttctcca
gaggaaagctcgtgggtggccgacctacctactggctgcttagtcacaga
gactgtatggccatgaggtcttggaagcctgtcagctgagcgctgaacac
gtacagaaagaagaattgagaactagccttagagcagaaatggggactgt
gtatttgctatagagaagaaaacccaggcacagctgttcacaggcccact
gcctgtagtgctatttcctcttctcttaagatgccaggtcagacgtatag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaagaaagaag
aagaagaagaagaaagaaagaagaaagaaagaaaggaaggaaggaaggag
gaaggaggaagaagaaagaaaggagaaagaagaagaagaagaaagaagaa
gaagaagaagaagaagaagaagaagaagagaagcagcagcaggcagacag
accaagtgactgtgccccatcgactactcacttttggcacgtagtagaat
accagtagcttttctggcacatgactcaaaggaggatggactctgggctc
tctt
gaattctttaaaagttgagattctctgtctactactgtagaaaatgtcta
catatgtaaaggggtggggtaaatggaatgactccataatggagtgtgtc
agccatcattggccatcaaagaaaaagtccaggaacagatagatatggac
tacctctttttgggttgttggggcatggtcttcctcaactgtcacatgct
attgccactgctctttgtcaccctccagaacttgctgggaatactgtatc
gatgaagacaccatgaacctgaatcatatgacacagggattgaggaatag
tcctgaccttgaaaacctcccagctactcactgattggtaagactctgag
cctaggcatcgtactctattccaaattaatagtctcctgcctcaattgga
aagcacatgccactgcctggagtgagagagggaagtagagatgaaggaaa
gaaagaagaaacgcaggtagacaggcttccaaaaggaggtattatccttc
ccactgagttgagccaagttcagtaggtagatggggaatgaaagacattg
cagaggaagaaatgtgttaaaaatctaatctatggaataaaaaagctgaa
aagttctgattatggacggagggttgagttcgtgtaggaaacagattagg
ctgggggggggggtgtcaaagagcactttgtctttcacaacaagttattt
gtgctttatctcagcagcactgagaagtgattgatatgtttcaggcatag
caagggttgacactgacatgagcaccgtgttcagggagtccccatgacag
catttccctaggtatcctcctgggctactgccataatgatttcttttcat
cttagccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_68413632_68414730
seq2: B6Ng01-168E05.b_43_1096

seq1  GAATTCATTTTACCCTTCTGAAAGTGTCCTAGCCCCTCAGGAGGGAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTACCCTTCTGAAAGTGTCCTAGCCCCTCAGGAGGGAGGAC  50

seq1  ACATACCACTGTGACTTTGTGCAGTTGTACCTGTCTGGGACTTTGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCACTGTGACTTTGTGCAGTTGTACCTGTCTGGGACTTTGTTTTT  100

seq1  CCTACATAAAGCAAGGTCCCCACTCATAAGTAAGGTGGGCAAAGTGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATAAAGCAAGGTCCCCACTCATAAGTAAGGTGGGCAAAGTGCCTG  150

seq1  GCACACAACGGATGCTATCAGACGGCAACTTTTTATTTCATAAGTAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAACGGATGCTATCAGACGGCAACTTTTTATTTCATAAGTAGGCT  200

seq1  GCTTGGAAATCGTCAGAACTCAATTAAGATGAAAATAGATCACATTTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAAATCGTCAGAACTCAATTAAGATGAAAATAGATCACATTTGAC  250

seq1  CTCTAGCTATCTTATGCCTACTATCCTAAGAGGGCTCGTTCTTGCCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCTATCTTATGCCTACTATCCTAAGAGGGCTCGTTCTTGCCTTCC  300

seq1  ATTCATACTGAAGAGTATTCCTCTTGAAAATACATTTTGCAGACATTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATACTGAAGAGTATTCCTCTTGAAAATACATTTTGCAGACATTAAA  350

seq1  ATCCTGTAATTCCGAATTCAATTACAGGGAAGTGGTCATCAGTGAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTAATTCCGAATTCAATTACAGGGAAGTGGTCATCAGTGAAAGAA  400

seq1  ATTGGCACTGATGTGGAATGAGAACCAACAGCTGTCTGAGGAATGCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCACTGATGTGGAATGAGAACCAACAGCTGTCTGAGGAATGCAAGT  450

seq1  ATTTATAGCTCTCTGGAGCCCAGGTTAGGAAGCGGGCTGACACTTCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGCTCTCTGGAGCCCAGGTTAGGAAGCGGGCTGACACTTCTCCA  500

seq1  GAGGAAAGCTCGTGGGTGGCCGACCTACCTACTGGCTGCTTAGTCACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGCTCGTGGGTGGCCGACCTACCTACTGGCTGCTTAGTCACAGA  550

seq1  GACTGTATGGCCATGAGGTCTTGGAAGCCTGTCAGCTGAGCGCTGAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTATGGCCATGAGGTCTTGGAAGCCTGTCAGCTGAGCGCTGAACAC  600

seq1  GTACAGAAAGAAGAATTGAGAACTAGCCTTAGAGCAGAAATGGGGACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAAAGAAGAATTGAGAACTAGCCTTAGAGCAGAAATGGGGACTGT  650

seq1  GTATTTGCTATAGAGAAGAAAACCCAGGCACAGCTGTTCACAGGCCCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGCTATAGAGAAGAAAACCCAGGCACAGCTGTTCACAGGCCCACT  700

seq1  GCCTGTAGTGCTATTTCCTCTTCTCTTAAGATGCCAGGTCAGACGTATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAGTGCTATTTCCTCTTCTCTTAAGATGCCAGGTCAGACGTATAG  750

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  800
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG-AAGAAAGAA  799

seq1  AGAAAGAAAGAAAGAAAGAAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAA  850
         |||||   |||||   |||||||| ||||||||||||||||||||||
seq2  --GAAGAA--GAAGAA--GAAAGAAAG-AAGAAAGAAAGAAAGGAAGGAA  842

seq1  GGAAGGAAGGAAGGAAGGAAGAAAGAAAAGAAAGGAAGAAAGAAAGAAAG  900
      |||||| ||||||| ||||||||   ||||||||| ||||||||   |||
seq2  GGAAGG-AGGAAGG-AGGAAGAA--GAAAGAAAGG-AGAAAGAA--GAAG  885

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  950
      ||   ||||||| |||||   |||||   |||||   |||||  | |  |
seq2  AA--GAAGAAAG-AAGAA--GAAGAA--GAAGAA--GAAGAAGAAGAAGA  926

seq1  AGAGAAAGCAAGCAAGCCAGGGCAGGACAAGACACAAAGTGACCTGTTGC  1000
      |||| |||| ||||       |||||   | | || |||||| ||||   
seq2  AGAG-AAGC-AGCA-------GCAGGCAGACAGACCAAGTGA-CTGT--G  964

seq1  CCCCATCCGACTACTCACTTTTTGGCACGTAGTTAGAAATACCAGTTAGC  1050
      |||||| ||||||||||| ||||||||||||| ||| |||||||| ||||
seq2  CCCCAT-CGACTACTCAC-TTTTGGCACGTAG-TAG-AATACCAG-TAGC  1009

seq1  TTTTCTGGCCACATGACTTCCAAAGGAGGATGGACCTCTGGGCTCTCTT  1099
      |||||||| |||||||||  |||||||||||||| ||||||||||||||
seq2  TTTTCTGG-CACATGACT--CAAAGGAGGATGGA-CTCTGGGCTCTCTT  1054

seq1: chr3_68449366_68450225
seq2: B6Ng01-168E05.g_68_927 (reverse)

seq1  AAAGGCTAAAGATGGAAAGAAATCATTATGGCAGTTAGCCATGAGGATAC  50
      ||||||| |||||| ||||||||||||||||||||   ||| ||||||||
seq2  AAAGGCT-AAGATGAAAAGAAATCATTATGGCAGTAGCCCAGGAGGATAC  49

seq1  CTAGGG-AATGCTGTCCTGGGGACTCCCTGAACACGGTGCTCATGTCAGT  99
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  CTAGGGAAATGCTGTCATGGGGACTCCCTGAACACGGTGCTCATGTCAGT  99

seq1  GTCAACCCTTGCTATGCCTGAAACATATCAATCACTTCTCAGTGCTGCTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACCCTTGCTATGCCTGAAACATATCAATCACTTCTCAGTGCTGCTG  149

seq1  AGATAAAGCACAAATAACTTGTTGTGGAAGACAAAGTGCTCTTTGACACC  199
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGATAAAGCACAAATAACTTGTTGTGAAAGACAAAGTGCTCTTTGACACC  199

seq1  CCCCCCCCCAGCCTAATCTGTTTCCTACACGAACTCAACCCTCCGTCCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCAGCCTAATCTGTTTCCTACACGAACTCAACCCTCCGTCCAT  249

seq1  AATCAGAACTTTTCAGCTTTTTTATTCCATAGATTAGATTTTTAACACAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAACTTTTCAGCTTTTTTATTCCATAGATTAGATTTTTAACACAT  299

seq1  TTCTTCCTCTGCAATGTCTTTCATTCCCCATCTACCTACTGAACTTGGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTCTGCAATGTCTTTCATTCCCCATCTACCTACTGAACTTGGCT  349

seq1  CAACTCAGTGGGAAGGATAATACCTCCTTTTGGAAGCCTGTCTACCTGCG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAGTGGGAAGGATAATACCTCCTTTTGGAAGCCTGTCTACCTGCG  399

seq1  TTTCTTCTTTCTTTCCTTCATCTCTACTTCCCTCTCTCACTCCAGGCAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTTTCTTTCCTTCATCTCTACTTCCCTCTCTCACTCCAGGCAGT  449

seq1  GGCATGTGCTTTCCAATTGAGGCAGGAGACTATTAATTTGGAATAGAGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTGCTTTCCAATTGAGGCAGGAGACTATTAATTTGGAATAGAGTA  499

seq1  CGATGCCTAGGCTCAGAGTCTTACCAATCAGTGAGTAGCTGGGAGGTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGCCTAGGCTCAGAGTCTTACCAATCAGTGAGTAGCTGGGAGGTTTT  549

seq1  CAAGGTCAGGACTATTCCTCAATCCCTGTGTCATATGATTCAGGTTCATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCAGGACTATTCCTCAATCCCTGTGTCATATGATTCAGGTTCATG  599

seq1  GTGTCTTCATCGATACAGTATTCCCAGCAAGTTCTGGAGGGTGACAAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTCATCGATACAGTATTCCCAGCAAGTTCTGGAGGGTGACAAAGA  649

seq1  GCAGTGGCAATAGCATGTGACAGTTGAGGAAGACCATGCCCCAACAACCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGCAATAGCATGTGACAGTTGAGGAAGACCATGCCCCAACAACCC  699

seq1  AAAAAGAGGTAGTCCATATCTATCTGTTCCTGGACTTTTTCTTTGATGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGGTAGTCCATATCTATCTGTTCCTGGACTTTTTCTTTGATGGC  749

seq1  CAATGATGGCTGACACACTCCATTATGGAGTCATTCCATTTACCCCACCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATGGCTGACACACTCCATTATGGAGTCATTCCATTTACCCCACCC  799

seq1  CTTTACATATGTAGACATTTTCTACAGTAGTAGACAGAGAATCTCAACTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATATGTAGACATTTTCTACAGTAGTAGACAGAGAATCTCAACTT  849

seq1  TTAAAGAATTC  860
      |||||||||||
seq2  TTAAAGAATTC  860