BAC Information

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BAC

Clone NameB6Ng01-168H16
Chromosome3 (Build37)
Map Location 20,169,521 - 20,302,674
singlet/doubletdoublet
Overlap geneCpb1, Agtr1b
Upstream geneDnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283
Downstream geneEG665094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168H16.bB6Ng01-168H16.g
ACCDH959707DH959708
length1,0851,158
definitionDH959707|Mus musculus domesticus DNA, BAC clone: B6Ng01-168H16, 5' end.DH959708|Mus musculus domesticus DNA, BAC clone: B6Ng01-168H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,169,521 - 20,170,611)(20,301,505 - 20,302,674)
sequence
gaattcacatactgagaatgcactttacaaagaaaagctgagtgtggttg
tgtgtgcttacaacccatgtttggtggatggcagggagagtcaggaggat
aactgggacttgctgaccaccagccaccagcctcacttcagactgagtga
gagatcctgtctgaagggactaaggtagagaatgaaagagcagataccgg
acattctcctctggcctttttgtacacagataggtgtatgtactagtagt
acacaccacattatcacaaacacagatacacaatcacacaaaaataacat
gcataaataatcaaaactaaaattgattagcaagaagcatgaagaacatg
gttatttctcctaattccagttaattgcagcattctttagctaccctctt
ttgtttttcaattttatgcaacagttgcttattatgacaacaatctttat
ggtaatgcatagagctgccaaggaataataaatacagcccaaaaaagtag
tggagagaaactgagccttcctttactttaatagacttattttcataatc
tttgaacttatttctgtgaaagtcacagtaatataaacccaagagcatct
ttctgctgagttctttactgtgtctggaaacaaaatactcttgaggatcc
agctgtacactgagatttctatcttattcataactgttgttgggatttat
tacataatgggctttatgtttttgacacaagagtggatgaaacacataca
gtatttgtcttcctaagggagactttagagaaaataggaaatgtcatgta
aatgacacatttgattattctaatgcttttatttatgaatatattaccac
aaacatccattttcatggaaaaatgtcagctaggttctactgtgttttgt
gtgtatgtttttctattctatacattgagcagagttctggaagtctgaaa
taaatctgaccttgggatcttgattttctatgtgtctcatttgttagatg
tttataagctacgctcaggtgcagatgtagttctacacactgatgcagac
tggctcaaatgatattttgggctattctggaaatt
gaattcatttcatgtcttcatacctgtttgtagtaactgttatcacaatt
ttagatttcaaatttttacttgatttcaaatttgtaaactatgtgaaatg
acagaggatcttgatttttgtcttgttgtgtcacagatttttttttgtaa
aaaatcgaactgaaaattgtctcaagatatttggggatgatgacaatata
ttttataaagttactcaaaaaaaggtctgatgacataaagatgccttcag
gttcgctaaaaactgttcataaaccgtgtgctatgaaagaagccataggt
aaccacagtgagaaaactttctctaatgataatgctgaagaattaaagat
tacatctgctgcccctcagaagaaaggtcctacagacaggtaagaagacg
ttttaagtagtcatcaaatgaatggtggatgacagcattgcctgatttca
aagaactgtaaacatcccagcagctttggggcacatcatgatattagagt
atggaaaagggttttgaaacaacacattaattaaattatgtttaaatata
tgcatatatgtatatgtacacacacaaatacgtgcatgtatatatggaaa
tgtgtgtgtgatagatgaactcctaatttagtctctgtaagattaccaga
atattgcctactatatttctcaccttggtcaatggtcaataagttatgta
ctatatcttggatatgaaattattttttaaaagatcatttagaaacaatg
atttgattttaaaatcgatcaaacattaaacattctaaagaattaagcct
tgtgccactgccaacaaactttgttatacttgtacaaaagcattagtgtt
tgtttcatttcattggcaaataattagcacaggatccactaaaacacata
tgtgaagagttataacagttagcaccattcaaaatcagtgtattgttaca
caaataattcttgtgtagagttagaaaatatacagagaaactaatctgaa
gtgaggcaatctatcatatgatgtctaactatgacattttatggttcatt
agcatgcacaacggagcacttcacaatattgtatgtaacattgtgatcag
tgttagacgatgactgaccaaaggttcaggccctctttttcatggagcct
tgacctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_20169521_20170611
seq2: B6Ng01-168H16.b_45_1129

seq1  GAATTCACATACTGAGAATGCACTTTACAAAGAAAAGCTGAGTGTGGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATACTGAGAATGCACTTTACAAAGAAAAGCTGAGTGTGGTTG  50

seq1  TGTGTGCTTACAACCCATGTTTGGTGGATGGCAGGGAGAGTCAGGAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTTACAACCCATGTTTGGTGGATGGCAGGGAGAGTCAGGAGGAT  100

seq1  AACTGGGACTTGCTGACCACCAGCCACCAGCCTCACTTCAGACTGAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGACTTGCTGACCACCAGCCACCAGCCTCACTTCAGACTGAGTGA  150

seq1  GAGATCCTGTCTGAAGGGACTAAGGTAGAGAATGAAAGAGCAGATACCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCTGTCTGAAGGGACTAAGGTAGAGAATGAAAGAGCAGATACCGG  200

seq1  ACATTCTCCTCTGGCCTTTTTGTACACAGATAGGTGTATGTACTAGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTCCTCTGGCCTTTTTGTACACAGATAGGTGTATGTACTAGTAGT  250

seq1  ACACACCACATTATCACAAACACAGATACACAATCACACAAAAATAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCACATTATCACAAACACAGATACACAATCACACAAAAATAACAT  300

seq1  GCATAAATAATCAAAACTAAAATTGATTAGCAAGAAGCATGAAGAACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAATAATCAAAACTAAAATTGATTAGCAAGAAGCATGAAGAACATG  350

seq1  GTTATTTCTCCTAATTCCAGTTAATTGCAGCATTCTTTAGCTACCCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCTCCTAATTCCAGTTAATTGCAGCATTCTTTAGCTACCCTCTT  400

seq1  TTGTTTTTCAATTTTATGCAACAGTTGCTTATTATGACAACAATCTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCAATTTTATGCAACAGTTGCTTATTATGACAACAATCTTTAT  450

seq1  GGTAATGCATAGAGCTGCCAAGGAATAATAAATACAGCCCAAAAAAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGCATAGAGCTGCCAAGGAATAATAAATACAGCCCAAAAAAGTAG  500

seq1  TGGAGAGAAACTGAGCCTTCCTTTACTTTAATAGACTTATTTTCATAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGAAACTGAGCCTTCCTTTACTTTAATAGACTTATTTTCATAATC  550

seq1  TTTGAACTTATTTCTGTGAAAGTCACAGTAATATAAACCCAAGAGCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTTATTTCTGTGAAAGTCACAGTAATATAAACCCAAGAGCATCT  600

seq1  TTCTGCTGAGTTCTTTACTGTGTCTGGAAACAAAATACTCTTGAGGATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGAGTTCTTTACTGTGTCTGGAAACAAAATACTCTTGAGGATCC  650

seq1  AGCTGTACACTGAGATTTCTATCTTATTCATAACTGTTGTTGGGATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTACACTGAGATTTCTATCTTATTCATAACTGTTGTTGGGATTTAT  700

seq1  TACATAATGGGCTTTATGTTTTTGACACAAGAGTGGATGAAACACATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATGGGCTTTATGTTTTTGACACAAGAGTGGATGAAACACATACA  750

seq1  GTATTTGTCTTCCTAAGGGAGACTTTAGAGAAAATAGGAAATGTCATGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTCTTCCTAAGGGAGACTTTAGAGAAAATAGGAAATGTCATGTA  800

seq1  AATGACACATTTGATTATTCTAATGCTTTTATTTATGAATATATTACCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACACATTTGATTATTCTAATGCTTTTATTTATGAATATATTACCAC  850

seq1  AAACATCCATTTTCATGGAAAAATGTCAGCTAGGTTCTACTGTGTTTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCCATTTTCATGGAAAAATGTCAGCTAGGTTCTACTGTGTTTTGT  900

seq1  GTGTATGTTTTTCTATTCTTTACATTGAGCAGAGTTCTGGAAGTCTGAAA  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTGTATGTTTTTCTATTCTATACATTGAGCAGAGTTCTGGAAGTCTGAAA  950

seq1  TAAATCTGACCTT-GGATCTTGATTTTCTATTGTGTCTCATTTGTTTAGA  999
      ||||||||||||| |||||||||||||||| ||||||||||||| |||||
seq2  TAAATCTGACCTTGGGATCTTGATTTTCTA-TGTGTCTCATTTG-TTAGA  998

seq1  TGTTTATAAGCTAGGCTCAAGGTGCAGATGTGAGTTCTACACACTGTGGC  1049
      ||||||||||||| |||| |||||||||||| ||||||||||||||  ||
seq2  TGTTTATAAGCTACGCTC-AGGTGCAGATGT-AGTTCTACACACTGATGC  1046

seq1  AGAACTGGCTCAAATGATATTTGGGGCTATTTCTGGGAAATT  1091
      || ||||||||||||||||||| |||||| |||| |||||||
seq2  AG-ACTGGCTCAAATGATATTTTGGGCTA-TTCT-GGAAATT  1085

seq1: chr3_20301505_20302674
seq2: B6Ng01-168H16.g_68_1225 (reverse)

seq1  GGAGGTGCAAAGGCTCATTGAAAAAGAGAGGGCTGGAACCTTCGTCAGTC  50
      ||||||   |||||||  |||||||||| || ||| | | || |||||||
seq2  GGAGGT--CAAGGCTCCATGAAAAAGAG-GGCCTGAACCTTTGGTCAGTC  47

seq1  ATCCTCTACCACTTGATCACACTGTTACATACAATATGTGGAAGTTGCTC  100
      ||| |||| ||| |||||||| |||||||||||||||   |||| |||||
seq2  ATCGTCTAACAC-TGATCACAATGTTACATACAATATTGTGAAG-TGCTC  95

seq1  TGTTGTGCACTGCTAAATGAACCATAAAATGTCATAGTTAGACAATCATA  150
       |||||||| |||| |||||||||||||||||||||||||||| ||||||
seq2  CGTTGTGCA-TGCT-AATGAACCATAAAATGTCATAGTTAGAC-ATCATA  142

seq1  TGATAGATTTGCCTCACTTCAGATTAGTTTCTCTGTATATTTTCTTAACT  200
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  TGATAGA-TTGCCTCACTTCAGATTAGTTTCTCTGTATATTTTC-TAACT  190

seq1  CTACACAAGAATTATTTGTGTTAACAATACACCTGATTTTGAATGGTGCT  250
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  CTACACAAGAATTATTTGTG-TAACAATACA-CTGATTTTGAATGGTGCT  238

seq1  AACTGTTATAACTCTTCACATATGTGTTTTAGTGGATCCTGTGCTAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTATAACTCTTCACATATGTGTTTTAGTGGATCCTGTGCTAATTA  288

seq1  TTTGCCAATGAAATGAAACAAACACTAATGCTTTTGTACAAGTATAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAATGAAATGAAACAAACACTAATGCTTTTGTACAAGTATAACAA  338

seq1  AGTTTGTTGGCAGTGGCACAAGGCTTAATTCTTTAGAATGTTTAATGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTGGCAGTGGCACAAGGCTTAATTCTTTAGAATGTTTAATGTTT  388

seq1  GATCGATTTTAAAATCAAATCATTGTTTCTAAATGATCTTTTAAAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGATTTTAAAATCAAATCATTGTTTCTAAATGATCTTTTAAAAAATA  438

seq1  ATTTCATATCCAAGATATAGTACATAACTTATTGACCATTGACCAAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATATCCAAGATATAGTACATAACTTATTGACCATTGACCAAGGTG  488

seq1  AGAAATATAGTAGGCAATATTCTGGTAATCTTACAGAGACTAAATTAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATAGTAGGCAATATTCTGGTAATCTTACAGAGACTAAATTAGGA  538

seq1  GTTCATCTATCACACACACATTTCCATATATACATGCACGTATTTGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCTATCACACACACATTTCCATATATACATGCACGTATTTGTGTG  588

seq1  TGTACATATACATATATGCATATATTTAAACATAATTTAATTAATGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATATACATATATGCATATATTTAAACATAATTTAATTAATGTGTT  638

seq1  GTTTCAAAACCCTTTTCCATACTCTAATATCATGATGTGCCCCAAAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAAACCCTTTTCCATACTCTAATATCATGATGTGCCCCAAAGCTG  688

seq1  CTGGGATGTTTACAGTTCTTTGAAATCAGGCAATGCTGTCATCCACCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATGTTTACAGTTCTTTGAAATCAGGCAATGCTGTCATCCACCATT  738

seq1  CATTTGATGACTACTTAAAACGTCTTCTTACCTGTCTGTAGGACCTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGATGACTACTTAAAACGTCTTCTTACCTGTCTGTAGGACCTTTCT  788

seq1  TCTGAGGGGCAGCAGATGTAATCTTTAATTCTTCAGCATTATCATTAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGGGCAGCAGATGTAATCTTTAATTCTTCAGCATTATCATTAGAG  838

seq1  AAAGTTTTCTCACTGTGGTTACCTATGGCTTCTTTCATAGCACACGGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTCTCACTGTGGTTACCTATGGCTTCTTTCATAGCACACGGTTT  888

seq1  ATGAACAGTTTTTAGCGAACCTGAAGGCATCTTTATGTCATCAGACCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGTTTTTAGCGAACCTGAAGGCATCTTTATGTCATCAGACCTTT  938

seq1  TTTTGAGTAACTTTATAAAATATATTGTCATCATCCCCAAATATCTTGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTAACTTTATAAAATATATTGTCATCATCCCCAAATATCTTGAG  988

seq1  ACAATTTTCAGTTCGATTTTCTACAAAAAAAAATCTGTGACACAACAAGA  1050
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACAATTTTCAGTTCGATTTTTTACAAAAAAAAATCTGTGACACAACAAGA  1038

seq1  CAAAAATCAAGATCCTCTGTCATTTCACATAGTTTACAAATTTGAAATCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCAAGATCCTCTGTCATTTCACATAGTTTACAAATTTGAAATCA  1088

seq1  AGTAAAAATTTGAAATCTAAAATTGTGATAACAGTTACTACAAACAGGTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAATTTGAAATCTAAAATTGTGATAACAGTTACTACAAACAGGTA  1138

seq1  TGAAGACATGAAATGAATTC  1170
      ||||||||||||||||||||
seq2  TGAAGACATGAAATGAATTC  1158