BAC Information

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BAC

Clone NameB6Ng01-168K08
Chromosome3 (Build37)
Map Location 144,293,739 - 144,294,844
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621809, LOC100039938, LOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761
Downstream geneSh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168K08.bB6Ng01-168K08.g
ACCDH959831DH959832
length1,1741,078
definitionDH959831|Mus musculus domesticus DNA, BAC clone: B6Ng01-168K08, 5' end.DH959832|Mus musculus domesticus DNA, BAC clone: B6Ng01-168K08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccaaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggtgcctca
gaaaattgaagatagtactaccagaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaagaacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccaggt
ccccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagttatttttaaaaaatgaatttatgaaattcctaggca
aatggatggacctggagggtatcatcctgagtgaagtaacccaatcacaa
aggaactcgcacaatatgtactcactgataagtggataatagtccagaaa
cttaggatacccaagatataagatacaacttgccaaatgcatgaaattca
agaagaacgaagaccaaagtgtggacactttaccctttcttagaaatggg
aacaaaacacccatagaaggagttacagagacaaaatttggagctgtgac
gaaaggatggagcatctagtgattgccatatgcagggatccatcccataa
tcagcttccaaatgctgacaccattgcatacactagcaagattttgctga
aaggacccagatatagctctctcttgtgagattatgccggggcctagcaa
acacagaagtggatgatcacagtcagctattggatgggtcacacggcccc
aatggaggagctagagaaactccccaggagctaagggaactgcaacccta
taggtggaacacatatgactaccatacccgggagctcttgtctttagctg
catatgtatcaaagatggctagtcggcatcactgcaagagagcccatgac
ttgcaaactttatatgcccagcaaaggaatcctcagcccaaaaggggaat
ggtgtgggtttagggaatgttggg
gaattcttttattagttctccaataaatgtcagaaacaagcactctattt
cttctgagcttccttgtgtgtgtgtgtgtgttttttttttttttttacaa
attaaatattttgctctttttcattaaaaagagttgtggacagtcttaaa
agagaaaaagtatttcaggaataaaaatgacctttaaccccactgcccac
gtgtaagtgtcagttgcgttctgatgtacgatgtagttgttactagattc
agagattgtgatacggacagatctagtctacagtgcccaagggaacataa
acacagtcacccaaacaccctctagaactccacgagaccttcagggccct
ctatgatataaggttcttaaggaagttttaagcattcgaaaccatgatgc
aaaaggcactaaaaactagaccatattttaatagcatccgtcataggata
tagatagatcataatttgcagaacattcccctaaaactgctcagggcctg
atttcagagatggccaggagggaaaaggaaaagctgacaatggagtgaat
ctcaaacactcccccgtgaaccgccccaggcttgaacttgaacttgggac
aggtggatgccagcctgccagctctctgattggccttcacatcatcttcc
atcctgtaccacctccatttctgtttcctcaaacacttgactaaattcat
cttcgtgatgaataagcattcgatcaaaagaaacaatgactcctaatgaa
cgcctgtggcaccttgctcctcccccctgagttcaggactgtggttgaac
cctcgatggtttcctgttgaaagaccccggcgggaatcccacctcagaag
gcgcgcacacccagtagacgctgagaccgatctcgctgtaagtacacgag
gcttatggcacacaaacacacaaacaacaaagagcgctcaagccagcatg
ctgggtgaaactcatgcacgcacagggcagagagttcgactctgcccaaa
cttcttacaggcttataatgcaaacacaacaaggggagcgaagattgcgg
gttaaacatggttgcttatttaatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144293739_144294844
seq2: B6Ng01-168K08.g_68_1145

seq1  GAATTCTTTTATTAGTTCTCCAATAAATGTCAGAAACAAGCACTCTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATTAGTTCTCCAATAAATGTCAGAAACAAGCACTCTATTT  50

seq1  CTTCTGAGCTTCCTTGTGTGTGTGTGTGTGTTTTTTTTTTTTTTTTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGCTTCCTTGTGTGTGTGTGTGTGTTTTTTTTTTTTTTTTACAA  100

seq1  ATTAAATATTTTGCTCTTTTTCATTAAAAAGAGTTGTGGACAGTCTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATATTTTGCTCTTTTTCATTAAAAAGAGTTGTGGACAGTCTTAAA  150

seq1  AGAGAAAAAGTATTTCAGGAATAAAAATGACCTTTAACCCCACTGCCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAAGTATTTCAGGAATAAAAATGACCTTTAACCCCACTGCCCAC  200

seq1  GTGTAAGTGTCAGTTGCGTTCTGATGTACGATGTAGTTGTTACTAGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGTGTCAGTTGCGTTCTGATGTACGATGTAGTTGTTACTAGATTC  250

seq1  AGAGATTGTGATACGGACAGATCTAGTCTACAGTGCCCAAGGGAACATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTGTGATACGGACAGATCTAGTCTACAGTGCCCAAGGGAACATAA  300

seq1  ACACAGTCACCCAAACACCCTCTAGAACTCCACGAGACCTTCAGGGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTCACCCAAACACCCTCTAGAACTCCACGAGACCTTCAGGGCCCT  350

seq1  CTATGATATAAGGTTCTTAAGGAAGTTTTAAGCATTCGAAACCATGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATATAAGGTTCTTAAGGAAGTTTTAAGCATTCGAAACCATGATGC  400

seq1  AAAAGGCACTAAAAACTAGACCATATTTTAATAGCATCCGTCATAGGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCACTAAAAACTAGACCATATTTTAATAGCATCCGTCATAGGATA  450

seq1  TAGATAGATCATAATTTGCAGAACATTCCCCTAAAACTGCTCAGGGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATCATAATTTGCAGAACATTCCCCTAAAACTGCTCAGGGCCTG  500

seq1  ATTTCAGAGATGGCCAGGAGGGAAAAGGAAAAGCTGACAATGGAGTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGAGATGGCCAGGAGGGAAAAGGAAAAGCTGACAATGGAGTGAAT  550

seq1  CTCAAACACTCCCCCGTGAACCGCCCCAGGCTTGAACTTGAACTTGGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACACTCCCCCGTGAACCGCCCCAGGCTTGAACTTGAACTTGGGAC  600

seq1  AGGTGGATGCCAGCCTGCCAGCTCTCTGATTGGCCTTCACATCATCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGATGCCAGCCTGCCAGCTCTCTGATTGGCCTTCACATCATCTTCC  650

seq1  ATCCTGTACCACCTCCATTTCTGTTTCCTCAAACACTTGACTAAATTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTACCACCTCCATTTCTGTTTCCTCAAACACTTGACTAAATTCAT  700

seq1  CTTCGTGATGAATAAGCATTCGATCAAAAGAAACAATGACTCCTAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTGATGAATAAGCATTCGATCAAAAGAAACAATGACTCCTAATGAA  750

seq1  CGCCTGTGGCACCTTGCTCCTCCCCCCTGAGTTCAGGACTGTGGTTGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGTGGCACCTTGCTCCTCCCCCCTGAGTTCAGGACTGTGGTTGAAC  800

seq1  CCTCGATGGTTTCCTGTTGAAAGACCCCGGCGGGAATCCCACCTCAGGAA  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTCGATGGTTTCCTGTTGAAAGACCCCGGCGGGAATCCCACCTCA-GAA  849

seq1  GGCGCGCACACCCAGTAGGACGCTGAGACCGATCTCGCTGTAAGTACACG  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGCGCGCACACCCAGTA-GACGCTGAGACCGATCTCGCTGTAAGTACACG  898

seq1  AGGCTTTAATGGCACACAAACACACAAACAACAAAGGAGCGCTCAAGCCA  950
      ||||||  ||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGCTT--ATGGCACACAAACACACAAACAACAAA-GAGCGCTCAAGCCA  945

seq1  GCATGCTGGGGTGAAACTCATGCACCGCACAGGGGGCAGAGGAGTTCGAC  1000
      ||||||| |||||||||||||||| ||||||  ||||||| |||||||| 
seq2  GCATGCT-GGGTGAAACTCATGCA-CGCACA--GGGCAGA-GAGTTCGA-  989

seq1  CCCTGCCCAAACTTCTTACAGGCTTATAAAGGCAAAAACCACAAACCAAA  1050
      | ||||||||||||||||||||||||| || ||||| || ||||      
seq2  CTCTGCCCAAACTTCTTACAGGCTTAT-AATGCAAACACAACAA------  1032

seq1  AGGGGGGAGCCGAAAGAATTTGCGGGGTTAAACATGGTTGGCTTATTTAA  1100
         |||||||   ||||  |||| ||||||||||||||| |||||||| |
seq2  ---GGGGAGC--GAAGA--TTGC-GGGTTAAACATGGTT-GCTTATTT-A  1072

seq1  ATGTGT  1106
      ||||||
seq2  ATGTGT  1078