BAC Information

Click to search

BAC

Clone NameB6Ng01-168K10
Chromosome3 (Build37)
Map Location 47,383,224 - 47,500,193
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545517, LOC383849, LOC383850, LOC100039426
Downstream geneLOC666202, LOC666208, 1700018B24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168K10.bB6Ng01-168K10.g
ACCDH959835DH959836
length1,1251,111
definitionDH959835|Mus musculus domesticus DNA, BAC clone: B6Ng01-168K10, 5' end.DH959836|Mus musculus domesticus DNA, BAC clone: B6Ng01-168K10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,499,054 - 47,500,193)(47,383,224 - 47,384,350)
sequence
gaattctttaaaatttagaatttaattctgcaccttctttgttcctaaga
catccggcttcctggtacctgttggttccatctgaggtttcagtgtctat
gaagtgactaattcattaccggtttttaattattatatattaattatttg
aatgttaactttctctcattaatatttgtacagtaaggcatagtactgat
ctgcagttatgaataataaaaagttcagggtattttaaatatctcatatg
aaaagttactacagagatggaatgattatttttaatttttatttatttat
ttatttattttaggttttttgagacagggtctctctgtatagccctggct
gccctgtaactcactttggagaccaggctggcctcaaactcagaaatcct
cctgcctctgccttccgagtgctaggattaaaggcgtgtgccaccacacc
cagcctgaaatgattatttgacatcataacatatagatatttttatgaca
gaagagaagtaacatctggttagatgttcatactccttttgatgtaaaca
agttcccgaactatttcaattacctaattaatgtacatgtatagcctgaa
acctttctaagcagaagtataaggatgtggcttctactttgtcaaattaa
tcaccattctgcaaaatgtaaagctatatattgagagttttgtaatatca
tattattatgcaatatagtttatattcagatgtgatatttatttagcaat
atttgctgtgtccatttagtaattctgtgaaattctgtggagaagtgaaa
taatcacaaaaaaacaaatgcttcttcatctgatagccatggcattggca
gaaatggaactgcagcatacctacaatcctgcccaagcctgcttagacca
gccttcattcagatacagcaggctgattaaatctgttgtatctaataatt
attgtattgtgccacactggcacaggcagattctaagagccattgtttca
tagcacagcagcattaaaggtgtttctatctggctgaaaatacgttcaaa
tctgttactttagatgtctttctttataaatgtacaaaatatagcactag
ttctaaagctgggtgaaaacacaaa
gaattcataaggaaaatttgtaattttcactgctggatcttataattgtt
tgggtatcaggtgactttggcctcataacagaaatgagcaaatactattt
ttgtttcttctttgcagaatactttgaggagaattgtgttaattcttcct
tgaaaaatatggtaaaatactgcatctaatccatgtgtcccatgaccttt
ttgggatatggagacatttaagtactacttgtatttcactatgcggtgga
tttatctcaataagtgatttaggttttgagtcatattttaaaatatgtag
agtctttaaaatatatcattataggaagtctctataagtgaaattaatta
caaaatagcatatttgtctaagtacatagttttatatattttatcttttc
ttcttatgacttaattttctgtaactactttcgtctaggctacaagaaat
tcgcttgtctaaacatacagagaaacaaatatcacaaacaaatatacata
gaagcaaaaaataatatcatcctgttattcattagaactattgaaaacat
ttgactcgtttgctactcttgctttaaaagtagagaaaaagctgctcatg
aattgaaaagtttgttcaaataatttcatatagaatcacatgttgcatta
aaatttctttatatcacaaatatttttactttagtatttttgtgcagtgg
gtaataaaatacaattatggaaactttttgtcagagtagaactgaagggt
aaagaaagatgttctatggaattgaagcaaaacaaagaaaagctgtcaga
ggactagatgccagacaccaaatagaattgaatcccttcaatggagacag
agtcaaaaaataaatggtattaaagttaaacactattgctgggaagaaaa
cttaatgaaaacactgaatcaaacacagttgtcttgaggggagtaaatgc
ctacaataacttagatttgtaactttagctgatatatatcatataatcat
ataaatggcaatgcctgtcttggaaaacagtagtatatttacaaaccaca
tttttacaaagatatgcatatctacatgaaactaatcattattacatact
cctacatcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_47499054_47500193
seq2: B6Ng01-168K10.b_45_1169 (reverse)

seq1  TTTGTGTTATCACCCAGCCTTTAGAACTAAGTGCTATATTTTGTACATAT  50
      |||||||| |||||||| |||||||||| ||||||||||||||||||| |
seq2  TTTGTGTTTTCACCCAG-CTTTAGAACT-AGTGCTATATTTTGTACAT-T  47

seq1  TATAAAAGAAAGACATCTAAAGTAACAGATTTTGAAACGTATTTTTCAGG  100
      ||| ||||||||||||||||||||||||||||   |||||| |||||| |
seq2  TAT-AAAGAAAGACATCTAAAGTAACAGATTT--GAACGTA-TTTTCA-G  92

seq1  CCAGATAGAAACACCCTTTAATGCTGCTGTGCTATGAAAACAATGGCTCT  150
      ||||||||||||| |||||||||||||||||||||| |||||||||||| 
seq2  CCAGATAGAAACA-CCTTTAATGCTGCTGTGCTATG-AAACAATGGCTC-  139

seq1  TTAGAATCTGCCTGTTGCCAGTGTTGGCAACAATACAATAATTATTAGAT  200
      |||||||||||||| |||||||| |||| |||||||||||||||||||||
seq2  TTAGAATCTGCCTG-TGCCAGTG-TGGC-ACAATACAATAATTATTAGAT  186

seq1  ACAACAGATTTAATCAGCCCTGCTGTATCTGAATGAAGGCTGGTCTAAGC  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACAACAGATTTAATCAG-CCTGCTGTATCTGAATGAAGGCTGGTCTAAGC  235

seq1  AGGCTTGGGCAGGATTGTAGGTATGCTGCAGTTCCATTTCTGCCAATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGGGCAGGATTGTAGGTATGCTGCAGTTCCATTTCTGCCAATGCC  285

seq1  ATGGCTATCAGATGAAGAAGCATTTGTTTTTTTGTGATTATTTCACTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTATCAGATGAAGAAGCATTTGTTTTTTTGTGATTATTTCACTTCT  335

seq1  CCACAGAATTTCACAGAATTACTAAATGGACACAGCAAATATTGCTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAATTTCACAGAATTACTAAATGGACACAGCAAATATTGCTAAAT  385

seq1  AAATATCACATCTGAATATAAACTATATTGCATAATAATATGATATTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCACATCTGAATATAAACTATATTGCATAATAATATGATATTACA  435

seq1  AAACTCTCAATATATAGCTTTACATTTTGCAGAATGGTGATTAATTTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTCAATATATAGCTTTACATTTTGCAGAATGGTGATTAATTTGAC  485

seq1  AAAGTAGAAGCCACATCCTTATACTTCTGCTTAGAAAGGTTTCAGGCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGAAGCCACATCCTTATACTTCTGCTTAGAAAGGTTTCAGGCTAT  535

seq1  ACATGTACATTAATTAGGTAATTGAAATAGTTCGGGAACTTGTTTACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTACATTAATTAGGTAATTGAAATAGTTCGGGAACTTGTTTACATC  585

seq1  AAAAGGAGTATGAACATCTAACCAGATGTTACTTCTCTTCTGTCATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGTATGAACATCTAACCAGATGTTACTTCTCTTCTGTCATAAAA  635

seq1  ATATCTATATGTTATGATGTCAAATAATCATTTCAGGCTGGGTGTGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATATGTTATGATGTCAAATAATCATTTCAGGCTGGGTGTGGTGG  685

seq1  CACACGCCTTTAATCCTAGCACTCGGAAGGCAGAGGCAGGAGGATTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCCTTTAATCCTAGCACTCGGAAGGCAGAGGCAGGAGGATTTCTG  735

seq1  AGTTTGAGGCCAGCCTGGTCTCCAAAGTGAGTTACAGGGCAGCCAGGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAGGCCAGCCTGGTCTCCAAAGTGAGTTACAGGGCAGCCAGGGCT  785

seq1  ATACAGAGAGACCCTGTCTCAAAAAACCTAAAATAAATAAATAAATAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGAGACCCTGTCTCAAAAAACCTAAAATAAATAAATAAATAAAT  835

seq1  AAAAATTAAAAATAATCATTCCATCTCTGTAGTAACTTTTCATATGAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAAAAATAATCATTCCATCTCTGTAGTAACTTTTCATATGAGAT  885

seq1  ATTTAAAATACCCTGAACTTTTTATTATTCATAACTGCAGATCAGTACTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAATACCCTGAACTTTTTATTATTCATAACTGCAGATCAGTACTA  935

seq1  TGCCTTACTGTACAAATATTAATGAGAGAAAGTTAACATTCAAATAATTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTACTGTACAAATATTAATGAGAGAAAGTTAACATTCAAATAATTA  985

seq1  ATATATAATAATTAAAAACCGGTAATGAATTAGTCACTTCATAGACACTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATAATTAAAAACCGGTAATGAATTAGTCACTTCATAGACACTG  1035

seq1  AAACCTCAGATGGAACCAACAGGTACCAGGAAGCCGGATGTCTTAGGAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCAGATGGAACCAACAGGTACCAGGAAGCCGGATGTCTTAGGAAC  1085

seq1  AAAGAAGGTGCAGAATTAAATTCTAAATTTTAAAGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGTGCAGAATTAAATTCTAAATTTTAAAGAATTC  1125

seq1: chr3_47383224_47384350
seq2: B6Ng01-168K10.g_68_1178

seq1  GAATTCATAAGGAAAATTTGTAATTTTCACTGCTGGATCTTATAATTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGGAAAATTTGTAATTTTCACTGCTGGATCTTATAATTGTT  50

seq1  TGGGTATCAGGTGACTTTGGCCTCATAACAGAAATGAGCAAATACTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATCAGGTGACTTTGGCCTCATAACAGAAATGAGCAAATACTATTT  100

seq1  TTGTTTCTTCTTTGCAGAATACTTTGAGGAGAATTGTGTTAATTCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTTCTTTGCAGAATACTTTGAGGAGAATTGTGTTAATTCTTCCT  150

seq1  TGAAAAATATGGTAAAATACTGCATCTAATCCATGTGTCCCATGACCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATATGGTAAAATACTGCATCTAATCCATGTGTCCCATGACCTTT  200

seq1  TTGGGATATGGAGACATTTAAGTACTACTTGTATTTCACTATGCGGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATATGGAGACATTTAAGTACTACTTGTATTTCACTATGCGGTGGA  250

seq1  TTTATCTCAATAAGTGATTTAGGTTTTGAGTCATATTTTAAAATATGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCAATAAGTGATTTAGGTTTTGAGTCATATTTTAAAATATGTAG  300

seq1  AGTCTTTAAAATATATCATTATAGGAAGTCTCTATAAGTGAAATTAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTAAAATATATCATTATAGGAAGTCTCTATAAGTGAAATTAATTA  350

seq1  CAAAATAGCATATTTGTCTAAGTACATAGTTTTATATATTTTATCTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGCATATTTGTCTAAGTACATAGTTTTATATATTTTATCTTTTC  400

seq1  TTCTTATGACTTAATTTTCTGTAACTACTTTCGTCTAGGCTACAAGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATGACTTAATTTTCTGTAACTACTTTCGTCTAGGCTACAAGAAAT  450

seq1  TCGCTTGTCTAAACATACAGAGAAACAAATATCACAAACAAATATACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTGTCTAAACATACAGAGAAACAAATATCACAAACAAATATACATA  500

seq1  GAAGCAAAAAATAATATCATCCTGTTATTCATTAGAACTATTGAAAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAAAAATAATATCATCCTGTTATTCATTAGAACTATTGAAAACAT  550

seq1  TTGACTCGTTTGCTACTCTTGCTTTAAAAGTAGAGAAAAAGCTGCTCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCGTTTGCTACTCTTGCTTTAAAAGTAGAGAAAAAGCTGCTCATG  600

seq1  AATTGAAAAGTTTGTTCAAATAATTTCATATAGAATCACATGTTGCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAAAGTTTGTTCAAATAATTTCATATAGAATCACATGTTGCATTA  650

seq1  AAATTTCTTTATATCACAAATATTTTTACTTTAGTATTTTTGTGCAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTTTATATCACAAATATTTTTACTTTAGTATTTTTGTGCAGTGG  700

seq1  GTAATAAAATACAATTATGGAAACTTTTTGTCAGAGTAGAACTGAAGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAAATACAATTATGGAAACTTTTTGTCAGAGTAGAACTGAAGGGT  750

seq1  AAAGAAAGATGTTCTATGGAATTGAAGCAAAACAAAGAAAAGCTGTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGATGTTCTATGGAATTGAAGCAAAACAAAGAAAAGCTGTCAGA  800

seq1  GGACTAGATGCCAGACACCAAATAGAATTGAATCCCTTCAATGGAGACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGATGCCAGACACCAAATAGAATTGAATCCCTTCAATGGAGACAG  850

seq1  AGTCAAAAAATAAATGGTATTAAAGTTAAACACTATTGCTGGGAAGAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAAAATAAATGGTATTAAAGTTAAACACTATTGCTGGGAAGAAAA  900

seq1  CTTAATGAAAACACTGAATCAAACACAAGTTGTCTTGAGGGGAGTAAAAT  950
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  CTTAATGAAAACACTGAATCAAACAC-AGTTGTCTTGAGGGGAGT-AAAT  948

seq1  GCCTACAATAACTTAAGATTTGTAACTTTAGCTGATATTATATCATATAA  1000
      |||||||||||||| |||||||||||||||||||||| |||||||||| |
seq2  GCCTACAATAACTT-AGATTTGTAACTTTAGCTGATA-TATATCATAT-A  995

seq1  ATCATATAAATGGCAATGCCTGTTCTTGGAAAAACAGTAAGTAATATTTA  1050
      |||||||||||||||||||||| |||||| |||||||| ||| |||||||
seq2  ATCATATAAATGGCAATGCCTG-TCTTGG-AAAACAGT-AGT-ATATTTA  1041

seq1  CAAAACCAACATTTTTAACAAAGATAATGCATATCTACAATGAAACATAT  1100
      ||||  | |||||||| |||||||| |||||||||||| |||||||  ||
seq2  CAAA--CCACATTTTT-ACAAAGAT-ATGCATATCTAC-ATGAAACTAAT  1086

seq1  CATATATACATACTCCTACAATTCAGT  1127
      |||   ||||||||||||||  |||||
seq2  CATTATTACATACTCCTACA--TCAGT  1111