BAC Information

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BAC

Clone NameB6Ng01-168P11
Chromosome3 (Build37)
Map Location 112,382,586 - 112,475,304
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC625585, EG229746, LOC668717
Downstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168P11.bB6Ng01-168P11.g
ACCDH960067DH960068
length1,0641,207
definitionDH960067|Mus musculus domesticus DNA, BAC clone: B6Ng01-168P11, 5' end.DH960068|Mus musculus domesticus DNA, BAC clone: B6Ng01-168P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,474,216 - 112,475,304)(112,382,586 - 112,383,531)
sequence
gaattcattctcactgtaatgcccatgtattggtattagctcaaaacatt
tagatgacagttaaattctataaggacttcattatacaaaattctaaatt
ctgttgtttctggtcaactaccaagtctgtccaggcagcaatccacccca
ataatgcctctcacatcttgacgcctattgcgcatgcttaaagtgtgtgt
tttacaaaaaaatgtcctgcaacactcattctggtaccctatttgaattt
catttaatacacaaactatttaattaggacagtatagttagttacactct
caacttataaatgagagcactggctttctgaggaaatgttgcacttatta
ttgtattgaattgtattgtatagatactgtcataatgtagggagttatct
attccataatatgtgtgcatttaagtcttccaagtagtaggttaatttta
tttgaatgcaagagctttgggaggatgatgattaagcgaggcaatgaaga
gtaggtccttttattgcattagtggctttttaggaagagaggaaccttct
ctgccatactgattcttctttgtcacttggtatcttccaaatgtgctaac
aggaagctcttccctagacattaagccgatgctggtaactgcctttgtaa
accacagctctagaacaatgtagagcctacctatggcagaaagacagggc
atcaagtgaaggatgtggttgcccatccagtcaaaactctgacccataat
tattcctgtcagaaagaactgcaggaatggaaatggagaatatcctaagg
aaaagaaggttcagcaataggcccaaagtgagatccagaataagggaatc
cccaaggcctgacactattactgaggctatggagcattccttgttaagtg
gggacatcctctttgtagacagctggggagaggtatgggatgtggacagt
tggagtagactagagggaataaaatctgagtgtaaaaataataaataata
cattataaaattacttcctggggaggggtctttcattggtcttcattgct
tcattggtctgaat
gaattcagtaagaatgacattcagtgacattcagaattgcctctggtatt
acactatcacttagaatacaagccaagttgctcccatatacaggaattta
caatggtttaggaagtagattgggctgtggttttagagtattgcattatt
catgagatggttagctagaactgaactccctaattagaaccttgacatgg
gtgtgaaagaccttgccctaggagtgtaaagatctcacacctggcttcta
agactatcgctgaccctttagatagggctgactttgcctcagttgtttta
ttgcccagttcctgccagtctttgtgtttacatttctctgttttgtgtaa
gagtcattaagcatccggtaacctcatttgtaccttgccattgtgtcacc
taacttccctattttcttctgtataaaaagtttgatgctcaatttgacag
attacattcagattctacacaatgtcgagtgctggtctgtctgtcactag
ctgactccttgcccatctgcacccagagacccgttccacgcatacaaaga
gatccagaggatctgtggcacataagcatatttcgtctcaaaaaaagttt
ttcttcatccataaaataactgatttaatgaagtttgtcctaatatttca
gcaattcagacacttgtgaaattctaattttaattttattctttctatat
agacttctccatgaatgaaattggagctttattcttctatcaagctcacc
aaaactttttatcacatcaacaaccaaagtatctcattttttattattta
tttgtttctgtcatataggatcagtcacatattaaccatgtgtacttctc
aaggtaaaggacttctccctaccatgaaaacttttaacttaagacccatt
ttaaatatagttttttttttttattaagcactggtgttttatgattttgt
aaacactagaacagacagaaaccatcagagaaaagatattaaattatatt
agaaaggcatattaaataggtaatttcagaaatgaggttctttaagaaaa
ttttgtatgatatttatcattagaaaatagtaaaatgaaaatagaaagaa
cttacgaagtagtatgtactaaagggtctgagtgttgaacctagagtgac
ttatgtaggtaatcaagatataaatgctaatcttagagctgagatgagat
tccattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_112474216_112475304
seq2: B6Ng01-168P11.b_47_1110 (reverse)

seq1  ATTCAGAACACAATGAAAAGACAATGAAAGGACACAATGAAAAGACCCCT  50
      |||||||   |||||||    |||||||  ||| ||||| ||||||||||
seq2  ATTCAGA--CCAATGAA---GCAATGAA--GAC-CAATG-AAAGACCCCT  41

seq1  TCCCCCAGGAAGTTATTTTTATAATGGTATTTATTTA-TATTTTTACACT  99
        |||||||||| || ||||||||| ||| ||||||| ||||||||||||
seq2  --CCCCAGGAAG-TAATTTTATAAT-GTA-TTATTTATTATTTTTACACT  86

seq1  CCAGATTTTATTCCCCTTCTAGTCTACCTTCCAACTGTTCCACATCCCAT  149
       ||||||||||||||  ||||||||||  |||||||| ||||||||||||
seq2  -CAGATTTTATTCCC--TCTAGTCTAC--TCCAACTG-TCCACATCCCAT  130

seq1  ACCTCCTCCCCCAAGCTGTCTTAACAAAGAGGATGTCCCCACTTAACAAG  199
      |||| ||||||  ||||||||  |||||||||||||||||||||||||||
seq2  ACCT-CTCCCC--AGCTGTCT--ACAAAGAGGATGTCCCCACTTAACAAG  175

seq1  GAATGCTCCATAGCCTCAGTAATAGTGTCAGGCCTTGGGGATTCCCCTTA  249
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAATGCTCCATAGCCTCAGTAATAGTGTCAGGCCTTGGGGATT-CCCTTA  224

seq1  TTCTGGATCTCACTTTGGGCCTATTGCTGAACCTTCTTTTCCTTAGGATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGATCTCACTTTGGGCCTATTGCTGAACCTTCTTTTCCTTAGGATA  274

seq1  TTCTCCATTTCCATTCCTGCAGTTCTTTCTGACAGGAATAATTATGGGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATTTCCATTCCTGCAGTTCTTTCTGACAGGAATAATTATGGGTC  324

seq1  AGAGTTTTGACTGGATGGGCAACCACATCCTTCACTTGATGCCCTGTCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTTGACTGGATGGGCAACCACATCCTTCACTTGATGCCCTGTCTT  374

seq1  TCTGCCATAGGTAGGCTCTACATTGTTCTAGAGCTGTGGTTTACAAAGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCATAGGTAGGCTCTACATTGTTCTAGAGCTGTGGTTTACAAAGGC  424

seq1  AGTTACCAGCATCGGCTTAATGTCTAGGGAAGAGCTTCCTGTTAGCACAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCAGCATCGGCTTAATGTCTAGGGAAGAGCTTCCTGTTAGCACAT  474

seq1  TTGGAAGATACCAAGTGACAAAGAAGAATCAGTATGGCAGAGAAGGTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGATACCAAGTGACAAAGAAGAATCAGTATGGCAGAGAAGGTTCC  524

seq1  TCTCTTCCTAAAAAGCCACTAATGCAATAAAAGGACCTACTCTTCATTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCTAAAAAGCCACTAATGCAATAAAAGGACCTACTCTTCATTGC  574

seq1  CTCGCTTAATCATCATCCTCCCAAAGCTCTTGCATTCAAATAAAATTAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTTAATCATCATCCTCCCAAAGCTCTTGCATTCAAATAAAATTAAC  624

seq1  CTACTACTTGGAAGACTTAAATGCACACATATTATGGAATAGATAACTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACTTGGAAGACTTAAATGCACACATATTATGGAATAGATAACTCC  674

seq1  CTACATTATGACAGTATCTATACAATACAATTCAATACAATAATAAGTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTATGACAGTATCTATACAATACAATTCAATACAATAATAAGTGC  724

seq1  AACATTTCCTCAGAAAGCCAGTGCTCTCATTTATAAGTTGAGAGTGTAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCCTCAGAAAGCCAGTGCTCTCATTTATAAGTTGAGAGTGTAAC  774

seq1  TAACTATACTGTCCTAATTAAATAGTTTGTGTATTAAATGAAATTCAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATACTGTCCTAATTAAATAGTTTGTGTATTAAATGAAATTCAAAT  824

seq1  AGGGTACCAGAATGAGTGTTGCAGGACATTTTTTTGTAAAACACACACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACCAGAATGAGTGTTGCAGGACATTTTTTTGTAAAACACACACTT  874

seq1  TAAGCATGCGCAATAGGCGTCAAGATGTGAGAGGCATTATTGGGGTGGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATGCGCAATAGGCGTCAAGATGTGAGAGGCATTATTGGGGTGGAT  924

seq1  TGCTGCCTGGACAGACTTGGTAGTTGACCAGAAACAACAGAATTTAGAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTGGACAGACTTGGTAGTTGACCAGAAACAACAGAATTTAGAAT  974

seq1  TTTGTATAATGAAGTCCTTATAGAATTTAACTGTCATCTAAATGTTTTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATAATGAAGTCCTTATAGAATTTAACTGTCATCTAAATGTTTTGA  1024

seq1  GCTAATACCAATACATGGGCATTACAGTGAGAATGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATACCAATACATGGGCATTACAGTGAGAATGAATTC  1064

seq1: chr3_112382586_112383531
seq2: B6Ng01-168P11.g_374_1273

seq1  GTTCCTGCCAGTCTTTGTGTTTACATTTCTCTGTTTTGTGTAAGAGTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGCCAGTCTTTGTGTTTACATTTCTCTGTTTTGTGTAAGAGTCAT  50

seq1  TAAGCATCCGGTAACCTCATTTGTACCTTGCCATTGTGTCACCTAACTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATCCGGTAACCTCATTTGTACCTTGCCATTGTGTCACCTAACTTC  100

seq1  CCTATTTTCTTCTGTATAAAAAGTTTGATGCTCAATTTGACAGATTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTTCTTCTGTATAAAAAGTTTGATGCTCAATTTGACAGATTACAT  150

seq1  TCAGATTCTACACAATGTCGAGTGCTGGTCTGTCTGTCACTAGCTGACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTCTACACAATGTCGAGTGCTGGTCTGTCTGTCACTAGCTGACTC  200

seq1  CTTGCCCATCTGCACCCAGAGACCCGTTCCACGCATACAAAGAGATCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCATCTGCACCCAGAGACCCGTTCCACGCATACAAAGAGATCCAG  250

seq1  AGGATCTGTGGCACATAAGCATATTTCGTCTCAAAAAAAGTTTTTCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTGTGGCACATAAGCATATTTCGTCTCAAAAAAAGTTTTTCTTCA  300

seq1  TCCATAAAATAACTGATTTAATGAAGTTTGTCCTAATATTTCAGCAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAAATAACTGATTTAATGAAGTTTGTCCTAATATTTCAGCAATTC  350

seq1  AGACACTTGTGAAATTCTAATTTTAATTTTATTCTTTCTATATAGACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTTGTGAAATTCTAATTTTAATTTTATTCTTTCTATATAGACTTC  400

seq1  TCCATGAATGAAATTGGAGCTTTATTCTTCTATCAAGCTCACCAAAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAATGAAATTGGAGCTTTATTCTTCTATCAAGCTCACCAAAACTT  450

seq1  TTTATCACATCAACAACCAAAGTATCTCATTTTTTATTATTTATTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACATCAACAACCAAAGTATCTCATTTTTTATTATTTATTTGTTT  500

seq1  CTGTCATATAGGATCAGTCACATATTAACCATGTGTACTTCTCAAGGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATATAGGATCAGTCACATATTAACCATGTGTACTTCTCAAGGTAA  550

seq1  AGGACTTCTCCCTACCATGAAAACTTTTAACTTAAGACCCATTTTAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTCTCCCTACCATGAAAACTTTTAACTTAAGACCCATTTTAAATA  600

seq1  TAGTTTTTTTTTTTTATTAAGCACTGGTGTTTTATGATTTTGTAAACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTTTTTTTTATTAAGCACTGGTGTTTTATGATTTTGTAAACACT  650

seq1  AGAACAGACAGAAACCATCAAGAAGAAAAGATATTAAATTATAATTAGAA  700
      ||||||||||||||||||||   ||||||||||||||||||| ||||| |
seq2  AGAACAGACAGAAACCATCA--GAGAAAAGATATTAAATTAT-ATTAG-A  696

seq1  AAGGCATATTAAATAGGGAAATTTCAAGAAAATTGAGGTTCTTTAAGAAA  750
      ||||||||||||||| || |||||| |||||  |||||||||||||||||
seq2  AAGGCATATTAAATA-GGTAATTTC-AGAAA--TGAGGTTCTTTAAGAAA  742

seq1  ATTTTGTATGAATAATTTATCATTAGAAAAATAAGTTAAAAATGAAAATA  800
      |||||||||||   ||||||||||||||||   |||  ||||||||||| 
seq2  ATTTTGTATGA--TATTTATCATTAGAAAA--TAGT--AAAATGAAAAT-  785

seq1  AGAAAGAACATAACCAGAAGGTTAAAGTATGTTACTTAAAGGGTTCTGAG  850
      ||||||||| ||    ||||     |||||| ||| ||||||| ||||||
seq2  AGAAAGAACTTA---CGAAG----TAGTATG-TAC-TAAAGGG-TCTGAG  825

seq1  TGTTGAAACTTAAAGA-TGAAAACAATATAAATGTGTTAAGTATATCTAA  899
      ||||||| ||   ||| |||      |||        || ||| |||  |
seq2  TGTTGAACCT---AGAGTGA----CTTAT-------GTAGGTA-ATC--A  858

seq1  AGATTATAAAAATGCCTAATTCTTAATAGCTGAG-TAGTATTCCATTG  946
      ||   ||| ||||| |||| |||| | ||||||| |   |||||||||
seq2  AG---ATATAAATG-CTAA-TCTT-AGAGCTGAGATGAGATTCCATTG  900