This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
B6Ng01-168P22
Chromosome
3 (Build37)
Map Location
155,213,171 - 155,213,329
singlet/doublet
singlet
Overlap gene
none
Upstream gene
Tyw3
,
Cryz
,
BC007180
,
Tnni3k
,
Fpgt
,
Lrrc44
,
EG383956
,
Scp2-ps1
Downstream gene
EG668902
,
LOC624519
,
LOC100040901
Link
Open Mouse BAC browser
Click to get alignment info.
name
Tyw3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:209584
MGI:2445040
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Cryz
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:12972
MGI:88527
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
BC007180
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:209601
MGI:2684418
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 9 ESTs, 1 Protein
name
Tnni3k
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:435766
MGI:2443276
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Fpgt
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:75540
MGI:1922790
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Lrrc44
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:74435
MGI:1921685
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG383956
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:383956
MGI:3644519
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 111 Proteins
pseudo
: _no_value
name
Scp2-ps1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:20281
MGI:98255
definition
note
: sterol carrier protein 2, pseudogene 1
pseudo
: _no_value
name
EG668902
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:668902
MGI:3647507
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs
name
LOC624519
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:624519
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
pseudo
: _no_value
name
LOC100040901
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100040901
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins
pseudo
: _no_value
name
Tyw3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142383607
GeneID:209584
MGI:2445040
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)
transcript_id
: NM_172474.2
name
Cryz
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:33859529
GeneID:12972
MGI:88527
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: crystallin, zeta
transcript_id
: NM_009968.1
name
Tnni3k
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142364382
GeneID:435766
MGI:2443276
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: TNNI3 interacting kinase
transcript_id
: NM_177066.4
name
Fpgt
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:117676388
GeneID:75540
MGI:1922790
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: fucose-1-phosphate guanylyltransferase
transcript_id
: NM_029330.2
name
Lrrc44
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:110347522
GeneID:74435
MGI:1921685
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: leucine rich repeat containing 44
transcript_id
: NM_028938.2
name
EG668902
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94369971
GeneID:668902
MGI:3647507
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs
product
: predicted gene, EG668902
transcript_id
: XM_001004541.1
name
Tyw3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:33859785
GeneID:209584
MGI:2445040
definition
codon_start
: 1
product
: tRNA-yW synthesizing protein 3 homolog
protein_id
: NP_766062.1
name
Cryz
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:33859530
CCDS:CCDS17927.1
GeneID:12972
MGI:88527
definition
GO_component
: GO:0005737 - cytoplasm [Evidence IEA]
GO_function
: GO:0003960 - NADPH:quinone reductase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0005212 - structural constituent of eye lens [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0007423 - sensory organ development [Evidence IEA]
codon_start
: 1
note
: quinone reductase
product
: crystallin, zeta
protein_id
: NP_034098.1
name
Tnni3k
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:59933232
CCDS:CCDS17928.1
GeneID:435766
MGI:2443276
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0006468 - protein amino acid phosphorylation [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
note
: cardiac ankyrin repeat kinase
product
: TNNI3 interacting kinase
protein_id
: NP_796040.2
name
Fpgt
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:117676389
GeneID:75540
MGI:1922790
definition
GO_component
: GO:0005829 - cytosol [Evidence ISS]
GO_function
: GO:0047341 - fucose-1-phosphate guanylyltransferase activity [Evidence ISS]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0042350 - GDP-L-fucose biosynthesis [Evidence ISS]
codon_start
: 1
product
: fucose-1-phosphate guanylyltransferase
protein_id
: NP_083606.2
name
Lrrc44
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:110347523
GeneID:74435
MGI:1921685
definition
GO_function
: GO:0016740 - transferase activity [Evidence IEA]
codon_start
: 1
product
: leucine rich repeat containing 44
protein_id
: NP_083214.2
name
EG668902
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94369972
GeneID:668902
MGI:3647507
definition
codon_start
: 1
product
: similar to guanylate binding protein 5a
protein_id
: XP_001004541.1
name
EG383956
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:383956
definition
number
: 3
pseudo
: _no_value
name
EG383956
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:383956
definition
number
: 2
pseudo
: _no_value
name
EG383956
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:383956
definition
number
: 1
pseudo
: _no_value
name
LOC624519
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:624519
definition
number
: 1
pseudo
: _no_value
name
LOC624519
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:624519
definition
number
: 2
pseudo
: _no_value
name
LOC100040901
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040901
definition
number
: 1
pseudo
: _no_value
name
LOC100040901
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040901
definition
number
: 2
pseudo
: _no_value
name
LOC100040901
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040901
definition
number
: 3
pseudo
: _no_value
name
BC007180
(CDS detail)
type
misc_RNA
link
vega
ensembl
MGI
NCBI
xref
GI:149252007
GeneID:209601
MGI:2684418
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 9 ESTs, 1 Protein
product
: cDNA sequence BC007180
transcript_id
: XR_032207.1
clone name
MSMg01-469A21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-119M20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-107P09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-404A13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-346A23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-516A02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-435I13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-275G24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-536E21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-097J22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-366A23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-505L17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-172I09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-237N14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-261H13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-353B02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-128E17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-409I11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-410I08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-535C15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-492K01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-501A07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-096B22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-172E20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-303A04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-533B23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-322M12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-352H19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-504I18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-346C23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-362E19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-233L09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-068D13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-444P19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-377K15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-262K04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-405J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-471B12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-236B16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-206C08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-450D08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-178A08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-206F07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-487K17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-144J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-532G19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-455H19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-133I16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-524I13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-377M22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-440E13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-122K10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-122I10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-236L17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-479N18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-120C10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-056E08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-339O03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-536L16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-338H07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-090C07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-504L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-309K03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-470N03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-424P19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-402D04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-512J01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-120O12
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-455F17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-486F20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-518C17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-185D23
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-332F20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-303K07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-411H09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-445M15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-325D15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-407P07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-456F08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-122O16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-066H12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-145J10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-474M13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-502D15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-429G22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-514I09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-048F13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-048F12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-048A17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-142K22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-048A05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-073P05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-472N04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-416A03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-477A10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-512M17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-359I08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-393F11
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-525P21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-424F01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-334C21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-346N23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-297N11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-530C02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-453C20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-091M24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-238L16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-296F05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-204J19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-200O05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-168A02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-002I11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-197P06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-097P14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-166J11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-220I15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-091N04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-077O22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-272E23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-303D14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-192O20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-029M23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-029O21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-072K02
singlet/doublet
doublet
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