BAC Information

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BAC

Clone NameB6Ng01-169A19
Chromosome6 (Build37)3 (Build37)
Map Location 145,370,800 - 145,371,74473,949,417 - 73,949,776
singlet/doubletsingletsinglet
Overlap geneIfltd1
Upstream gene4933425H06Rik, EG665149, Bcat1, Lrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik
Downstream geneLOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn, Itpr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169A19.bB6Ng01-169A19.g
ACCDH960130DH960131
length948401
definitionDH960130|Mus musculus domesticus DNA, BAC clone: B6Ng01-169A19, 5' end.DH960131|Mus musculus domesticus DNA, BAC clone: B6Ng01-169A19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,370,800 - 145,371,744)(73,949,417 - 73,949,776)
sequence
gaattccacaggctgttctttagtcattccccctccccccacccctaaca
caaaatgtatagtaaactgttttcaaaaagtaggtgctgttttgcttatt
ttaagccatgaagttggtgacagctggttatgccagcaaaataaaactaa
tccacacaagtttacgattgtaagccgtaagactataagttaggcagtgt
caggacactgcttgtttggcctgcaggatttttcctgctgttctctttgg
agacttacttccatgcctctgtcttctaattgtgtaaaagcaagctagct
gcaaggcagtgtttctgcagtgtctttggagatttctaaattttaaagca
ttctcttttagaagtcttttcaatatacctaggttggttggttggatgga
tggtttctttcgtgcactgtgagttggtaatattcatctggtcttcagct
tgttatctttagtagtttgggagaaaattctctgcttttggtgaaacatt
ccatccacacattttgccttaatcactcttattcctcagcaactatgata
caagtggatttttaagttttttaaactgatatttgcatttttgagtgtgt
gtgtttgtgtgtgtgtgtgaatgcacacacgtgcatgtatgcagcagcag
ctgctgtgtgtgtggaagtcagagactaggttacaggaattggttcccct
tccttcacaggcagcccagggatcaaactcacggcttcacccttggtgga
gagcacctctcactcctgagccatcttgcctggcttccatttcttctcag
ccttgtatgttctgtttttctaacctccttactctctaaaattcagactg
gatatttttcatcaacaatcgcctctcctactgtatccaatatactgtga
accgcatggcagtctctggtgttggggtatggtattttatagggttgg
attgacactcaaccctgagcatatatgtgtatatatatatatatatatat
atatatatatatatatatatatacacacacacatatatatgtgtgtgtgt
atgtatatatgtgtgtatatatatatagcgtgagagatgtagacgggggg
gggggggcgggggggcgcgcggggggacagccagacatatacacacacac
acatatatatatatatatgtatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatgtgtgtaggc
gtgtgtgtgtgtgtggatgtgtgtgcgtatgtgggagtgtagagagagcc
atattttaaaaataaaaaaaacatatacaagtttttttttgtcttttatt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_145370800_145371744
seq2: B6Ng01-169A19.b_44_991

seq1  GAATTCCACAGGCTGTTCTTTAGTCATTCCCCCTCCCCCCACCCCTAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGCTGTTCTTTAGTCATTCCCCCTCCCCCCACCCCTAACA  50

seq1  CAAAATGTATAGTAAACTGTTTTCAAAAAGTAGGTGCTGTTTTGCTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTATAGTAAACTGTTTTCAAAAAGTAGGTGCTGTTTTGCTTATT  100

seq1  TTAAGCCATGAAGTTGGTGACAGCTGGTTATGCCAGCAAAATAAAACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCATGAAGTTGGTGACAGCTGGTTATGCCAGCAAAATAAAACTAA  150

seq1  TCCACACAAGTTTACGATTGTAAGCCGTAAGACTATAAGTTAGGCAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACAAGTTTACGATTGTAAGCCGTAAGACTATAAGTTAGGCAGTGT  200

seq1  CAGGACACTGCTTGTTTGGCCTGCAGGATTTTTCCTGCTGTTCTCTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACACTGCTTGTTTGGCCTGCAGGATTTTTCCTGCTGTTCTCTTTGG  250

seq1  AGACTTACTTCCATGCCTCTGTCTTCTAATTGTGTAAAAGCAAGCTAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTACTTCCATGCCTCTGTCTTCTAATTGTGTAAAAGCAAGCTAGCT  300

seq1  GCAAGGCAGTGTTTCTGCAGTGTCTTTGGAGATTTCTAAATTTTAAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCAGTGTTTCTGCAGTGTCTTTGGAGATTTCTAAATTTTAAAGCA  350

seq1  TTCTCTTTTAGAAGTCTTTTCAATATACCTAGGTTGGTTGGTTGGATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTTAGAAGTCTTTTCAATATACCTAGGTTGGTTGGTTGGATGGA  400

seq1  TGGTTTCTTTCGTGCACTGTGAGTTGGTAATATTCATCTGGTCTTCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTTTCGTGCACTGTGAGTTGGTAATATTCATCTGGTCTTCAGCT  450

seq1  TGTTATCTTTAGTAGTTTGGGAGAAAATTCTCTGCTTTTGGTGAAACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTTTAGTAGTTTGGGAGAAAATTCTCTGCTTTTGGTGAAACATT  500

seq1  CCATCCACACATTTTGCCTTAATCACTCTTATTCCTCAGCAACTATGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCACACATTTTGCCTTAATCACTCTTATTCCTCAGCAACTATGATA  550

seq1  CAAGTGGATTTTTAAGTTTTTTAAACTGATATTTGCATTTTTGAGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGATTTTTAAGTTTTTTAAACTGATATTTGCATTTTTGAGTGTGT  600

seq1  GTGTTTGTGTGTGTGTGTGAATGCACACACGTGCATGTATGCAGCAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTGTGTGTGTGTGAATGCACACACGTGCATGTATGCAGCAGCAG  650

seq1  CTGCTGTGTGTGTGGAAGTCAGAGACTAGGTTACAGGAATTGGTTCCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGTGTGTGGAAGTCAGAGACTAGGTTACAGGAATTGGTTCCCCT  700

seq1  TCCTTCACAGGCAGCCCAGGGATCAAACTCACGGCTTCACCCTTGGTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCACAGGCAGCCCAGGGATCAAACTCACGGCTTCACCCTTGGTGGA  750

seq1  GAGCACCTCTCACTCCTGAGCCATCTTGCCTGGCTTCCATTTCTTCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCTCTCACTCCTGAGCCATCTTGCCTGGCTTCCATTTCTTCTCAG  800

seq1  CCTTGTATGTTCTGTTTTTCTAACCTCCTTACTCTCTAAAATTCAGACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTATGTTCTGTTTTTCTAACCTCCTTACTCTCTAAAATTCAGACTG  850

seq1  GATA-TTTTCATCAACAATCGCCTCTCCTACTGTATCCAATATACTGTGA  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTTCATCAACAATCGCCTCTCCTACTGTATCCAATATACTGTGA  900

seq1  ACCGCATGGCAGTCTCTGGTGTT-GGGTATGGTATTGTATA-GGTTGG  945
      ||||||||||||||||||||||| |||||||||||| |||| ||||||
seq2  ACCGCATGGCAGTCTCTGGTGTTGGGGTATGGTATTTTATAGGGTTGG  948

seq1: chr3_73949417_73949776
seq2: B6Ng01-169A19.g_143_471

seq1  ACACACACACATATATATATATATATATATATGTGTGTGTGTGTGTGTGT  50
      |||||||||||||||||| | | | | ||| | | | ||||||| | | |
seq2  ACACACACACATATATATGTGTGTGTGTATGTATATATGTGTGTATATAT  50

seq1  GTATTGCAGGAAAAACCATCATATTGAAAT-TAGACATGGCAACCCAATA  99
       ||| ||  ||              || || |||||  ||          
seq2  ATATAGCGTGA--------------GAGATGTAGACGGGG----------  76

seq1  GGGGAATGTTTCACAAGAGCAGACACAAACATGCTTGGAATAGATATGAC  149
      ||||   |        | |  |   |      ||  ||         |  
seq2  GGGGGGGG--------GCGGGGGGGC------GCGCGG--------GGGG  104

seq1  ACACACACACACAGACACACACACACACAATTGTGTGTGTGTGTGCTTTC  199
      |||  || ||| | ||||||||||||| |  | | | | | |||      
seq2  ACAGCCAGACATATACACACACACACATATATATATATATATGT------  148

seq1  AGTTCAGTATATATATATACATATATATATATACATATATACATATATAC  249
         |   |||||||||||| ||||||||||||| ||||||| ||||||| 
seq2  --ATATATATATATATATATATATATATATATATATATATATATATATAT  196

seq1  ATACACACACACACACACACACACACACACACATATATATATATATATAT  299
      ||| | | | | | | | | |       |  | | | | | | | |  ||
seq2  ATATATATATATATATATATATGTGTGTAGGCGTGTGTGTGTGTGTGGAT  246

seq1  ATATATGTATATAT------------------ATA-TATATATATATGAG  330
       | | ||  ||| |                  ||| | || | |||  | 
seq2  GTGTGTGCGTATGTGGGAGTGTAGAGAGAGCCATATTTTAAAAATAAAAA  296

seq1  AAACCTA---ATTTTAATTTTTGTCTTTTATTT  360
      |||| ||   |  ||  ||||||||||||||||
seq2  AAACATATACAAGTTTTTTTTTGTCTTTTATTT  329