BAC Information

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BAC

Clone NameB6Ng01-169D12
Chromosome3 (Build37)15 (Build37)
Map Location 32,533,995 - 32,534,13468,476,533 - 68,477,620
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC625125, Kcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977
Downstream geneActl6a, Mrpl47, Ndufb5, Usp13, Pex2, EG545512
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169D12.bB6Ng01-169D12.g
ACCDH960255DH960256
length3591,082
definitionDH960255|Mus musculus domesticus DNA, BAC clone: B6Ng01-169D12, 5' end.DH960256|Mus musculus domesticus DNA, BAC clone: B6Ng01-169D12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,533,995 - 32,534,134)(68,476,533 - 68,477,620)
sequence
tcctcctctcagcattctctagctgcctggcattctatgcccaggtgtgg
gaccctgtgagatttcctcattccatagcatgcccactgttgtgtttgtt
ctggtcttgtttaagaagccatattgctgaggtatcatgggtgactctct
ctctctctctctctctctctctctctctctctctctctgtctctctctct
ctcggggctgtgagtgtgagagtgtctgtctgtctctctctctctctcta
tatatatatatctctcgtgcttttgtgtgtgtgtgtgtgtaaaaaaaaaa
aaaaaaaagagagaatttctttctattcacgcgcttataataaacagaga
gagagagaa
gaattctttgtaactgtagagaggatagtttctttagctactgtacgtat
agccatgcccattcctaactgtaaactacacccttttgttcagagcagga
aactgtggaggcctaccatctccaggaagagttgtagagaacagatagat
cggcacattgtaactgtaattggtctctcactaatctcttggctctctgg
atgttctatgatgcctcccattaatccaaatagctcatagacccgttatc
gggtaatatctccaatgagttgcccctccttgcaaaaacagcctcctaga
actacccagttagttgtctgtctgtctactcacctgggctttcctgctgt
gggagtcaattttaaattttaattatttgtccagctctggcacacaggca
cactctgtactttctgagtaactgtattgcagtggtttttgtggttttga
gaacataaacttggtgggctttctctttcatttgttttctgttactagga
ctgtcaaggccaagccaaaaagggggtgggaagtgagatgttttacaggt
aatgaagacatcactcatatttcacagggggaaaagtggctgcatgttag
aaactgaggggagaatttagagcatatgtttagaatctctaacaacctaa
tttgttccccaaagacagttctgtgagaaaggaggtcggtttggtcagag
gaaggcaattgaaaggagttagggctcttagcaccagggagattgttaag
gaagatgctcccagaggaggcaatgaacactagatttgcaaatatttcct
ccagctagttgtttgctgagagctgacaggggccatgttttctggcatcc
cccacctctcagatgagtatgcccacccagagcgaggaaggggttaatct
aattgagatttattggcttgtggggaagctgaagggaaactacacagagg
aactcatgagccttcatgaaagtttaatttgatttgtgaaaggggacact
tgtatctgggcttgctgtgtttaataattaaagcacgatgggctctaaga
aaggcatggagctgggttaagcataagccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_32533995_32534134
seq2: B6Ng01-169D12.b_205_412

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTGTCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTC  50

seq1  TC-----------TGT----CTCTCTTTCTGTCTGTCTGTCTCTGTCTGT  85
      ||           |||     | ||| ||||||| ||| ||||| ||| |
seq2  TCGGGGCTGTGAGTGTGAGAGTGTCTGTCTGTCTCTCTCTCTCTCTCTAT  100

seq1  CTGTCTCTCTCTCTC--TCATGTGTGTGTGTGTGTGTGTAGACAAAAAGA  133
       | | | | ||||||   | | |||||||||||||||||| | ||||| |
seq2  ATATATATATCTCTCGTGCTTTTGTGTGTGTGTGTGTGTAAAAAAAAAAA  150

seq1  GAGAGAA-------------------------------------------  140
       | | ||                                           
seq2  AAAAAAAGAGAGAATTTCTTTCTATTCACGCGCTTATAATAAACAGAGAG  200

seq1  --------  140
              
seq2  AGAGAGAA  208

seq1: chr15_68476533_68477620
seq2: B6Ng01-169D12.g_70_1151

seq1  GAATTCTTTGTAACTGTAGAGAGGATAGTTTCTTTAGCTACTGTACGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTAACTGTAGAGAGGATAGTTTCTTTAGCTACTGTACGTAT  50

seq1  AGCCATGCCCATTCCTAACTGTAAACTACACCCTTTTGTTCAGAGCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGCCCATTCCTAACTGTAAACTACACCCTTTTGTTCAGAGCAGGA  100

seq1  AACTGTGGAGGCCTACCATCTCCAGGAAGAGTTGTAGAGAACAGATAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGGAGGCCTACCATCTCCAGGAAGAGTTGTAGAGAACAGATAGAT  150

seq1  CGGCACATTGTAACTGTAATTGGTCTCTCACTAATCTCTTGGCTCTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCACATTGTAACTGTAATTGGTCTCTCACTAATCTCTTGGCTCTCTGG  200

seq1  ATGTTCTATGATGCCTCCCATTAATCCAAATAGCTCATAGACCCGTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTATGATGCCTCCCATTAATCCAAATAGCTCATAGACCCGTTATC  250

seq1  GGGTAATATCTCCAATGAGTTGCCCCTCCTTGCAAAAACAGCCTCCTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATATCTCCAATGAGTTGCCCCTCCTTGCAAAAACAGCCTCCTAGA  300

seq1  ACTACCCAGTTAGTTGTCTGTCTGTCTACTCACCTGGGCTTTCCTGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCAGTTAGTTGTCTGTCTGTCTACTCACCTGGGCTTTCCTGCTGT  350

seq1  GGGAGTCAATTTTAAATTTTAATTATTTGTCCAGCTCTGGCACACAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCAATTTTAAATTTTAATTATTTGTCCAGCTCTGGCACACAGGCA  400

seq1  CACTCTGTACTTTCTGAGTAACTGTATTGCAGTGGTTTTTGTGGTTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTACTTTCTGAGTAACTGTATTGCAGTGGTTTTTGTGGTTTTGA  450

seq1  GAACATAAACTTGGTGGGCTTTCTCTTTCATTTGTTTTCTGTTACTAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAAACTTGGTGGGCTTTCTCTTTCATTTGTTTTCTGTTACTAGGA  500

seq1  CTGTCAAGGCCAAGCCAAAAAGGGGGTGGGAAGTGAGATGTTTTACAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAGGCCAAGCCAAAAAGGGGGTGGGAAGTGAGATGTTTTACAGGT  550

seq1  AATGAAGACATCACTCATATTTCACAGGGGGAAAAGTGGCTGCATGTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGACATCACTCATATTTCACAGGGGGAAAAGTGGCTGCATGTTAG  600

seq1  AAACTGAGGGGAGAATTTAGAGCATATGTTTAGAATCTCTAACAACCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGGGGAGAATTTAGAGCATATGTTTAGAATCTCTAACAACCTAA  650

seq1  TTTGTTCCCCAAAGACAGTTCTGTGAGAAAGGAGGTCGGTTTGGTCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCCCAAAGACAGTTCTGTGAGAAAGGAGGTCGGTTTGGTCAGAG  700

seq1  GAAGGCAATTGAAAGGAGTTAGGGCTCTTAGCACCAGGGAGATTGTTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAATTGAAAGGAGTTAGGGCTCTTAGCACCAGGGAGATTGTTAAG  750

seq1  GAAGATGCTCCCAGAGGAGGCAATGAACACTAGATTTGCAAATATTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGCTCCCAGAGGAGGCAATGAACACTAGATTTGCAAATATTTCCT  800

seq1  CCAGCTAGTTGTTTGCTGAGAGCTGACAGGGGCCATGTTTACTGGCATCC  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCAGCTAGTTGTTTGCTGAGAGCTGACAGGGGCCATGTTTTCTGGCATCC  850

seq1  CCCACCTCTCAGATGAGTATGCCCACCCAGAGCGAGGAAGGGGTTAATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTCTCAGATGAGTATGCCCACCCAGAGCGAGGAAGGGGTTAATCT  900

seq1  AATTGAGACTTTATTGGCTTGTGGGGAAGCTGAAGGGAAAACCACACAGA  950
      |||||||| |||||||||||||||||||||||||||| |||| |||||||
seq2  AATTGAGA-TTTATTGGCTTGTGGGGAAGCTGAAGGG-AAACTACACAGA  948

seq1  GGAACTCATGAGCCTTCATGAAAGTTTAATTTGATTTTGTGAAAGGGGAA  1000
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  GGAACTCATGAGCCTTCATGAAAGTTTAATTTGA-TTTGTGAAAGGGGA-  996

seq1  CAACTTGTATCTGGGCTTGCTGTGTTTAAT-ATTAAAGCAACGATGGGCT  1049
        |||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  -CACTTGTATCTGGGCTTGCTGTGTTTAATAATTAAAGC-ACGATGGGCT  1044

seq1  CCTAAGACAGGCATGGAGCTGGGTAAAGCATAAGCCACA  1088
       |||||| |||||||||||||||| ||||||||||||||
seq2  -CTAAGAAAGGCATGGAGCTGGGTTAAGCATAAGCCACA  1082