BAC Information

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BAC

Clone NameB6Ng01-169E12
Chromosome3 (Build37)
Map Location 52,551,108 - 52,687,468
singlet/doubletdoublet
Overlap geneLOC100039832
Upstream geneMaml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762
Downstream geneCog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169E12.bB6Ng01-169E12.g
ACCDH960301DH960302
length1,0861,161
definitionDH960301|Mus musculus domesticus DNA, BAC clone: B6Ng01-169E12, 5' end.DH960302|Mus musculus domesticus DNA, BAC clone: B6Ng01-169E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,551,108 - 52,552,207)(52,686,296 - 52,687,468)
sequence
gaattcctcttcaagtcatggacaagtgttctctgctactactgtgatgt
aacacctttttttttttttttgcttaaacttctgctttgtagtttatcac
ctaaggaagtcaggacaggaactcaagcagggcaggaacctggaggcagg
agctgatgcagagaccatggaggggggctgcttactggcttgctccccat
ggcttacttagcctggtttcttatagaacccaggaccaccagcccagggg
tggctctactcacaatgggctgggaccttccccaccggtcattaattaag
aaaatgccctataatagactgatcttatggaggcattttctcaaatgggg
ttccctcctttcagatgacgttagcttgtgtcaagttgacataaaactag
acagcacatacactttaaagctagggattagtagagagactctgggtaat
gtttaataacctcttcatctcattaagttcccaagtgcttttctcactaa
ctttggtgatagggaggtatccgtgtttcttggttaacatagttatatca
tgattttctctcctcctccttttccttcttccttcctcctcttcctcctt
ctttgaaatgctgaggctggaattcagggttttatgtggatcaggcaaat
gctctgtcactaagctagagccccagtcttttttactttttattttgaga
caggtccttaatgaatgacacgggatagccttaaactgtagcctaggctg
gccttcaccttttcatctccttgcttcaggctgctgtgtcacaggtctgt
aataccaggctaattcttcatcggtattacaaatttcaggattaccacca
attcaacctgctttctctctgtactcataaaaaagggagttctcttactg
acgttcagcttacccccatattattgtagactatgaagatcccttcaggg
ttcatatatgctgaatcagtgggactgtgtgaggtgactggatcagagct
gcttacacatcatcaaatagctctgattgaagaaacagattacagaatgg
gggccctttgaagggtcatcttatcttgggcccccg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttacgtgttttatactttt
aaagccactttcctatctgctaccttcagcaccacaggggcaggaactga
tatcagactaggggttctctctttacaggcagtgtgtagaggctagtaag
caaaaactcagattaaggtccaaattttgtgccatgatctaagatgaagg
gccattaactttgactaaaggacagacctttttttccctctaaggtagag
atgtgggatttctggacaaggagtttgtggcacacaacctaaattttatg
ggcatagtctagagatgtaactaactaagtttggttccttcttgcactcc
aatctttttcagtttatcacatccttcctcaagctctgggccacagtgca
gggaccagcagagttgacagtaatggaggggcatttaatgtttagcaagc
aacagagcccccttagaagctgtgtgtctggtgagtaggattcacagtat
gtcggtttcacacttcagaacctcctggtgctctcagacctgaactgata
accaaccccctcactgcatgcattcttcagaactgatgtttaaaactcct
caaagacaatgctgcccttctggtggcagagttcaccccatctgtgcaat
ctccttggccacagaagttggtctagcctggagcactcttgctggcccgg
actctgaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_52551108_52552207
seq2: B6Ng01-169E12.b_46_1131

seq1  GAATTCCTCTTCAAGTCATGGACAAGTGTTCTCTGCTACTACTGTGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTCAAGTCATGGACAAGTGTTCTCTGCTACTACTGTGATGT  50

seq1  AACACCTTTTTTTTTTTTTTTGCTTAAACTTCTGCTTTGTAGTTTATCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTTTTTTTTTTTTTTTGCTTAAACTTCTGCTTTGTAGTTTATCAC  100

seq1  CTAAGGAAGTCAGGACAGGAACTCAAGCAGGGCAGGAACCTGGAGGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAAGTCAGGACAGGAACTCAAGCAGGGCAGGAACCTGGAGGCAGG  150

seq1  AGCTGATGCAGAGACCATGGAGGGGGGCTGCTTACTGGCTTGCTCCCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATGCAGAGACCATGGAGGGGGGCTGCTTACTGGCTTGCTCCCCAT  200

seq1  GGCTTACTTAGCCTGGTTTCTTATAGAACCCAGGACCACCAGCCCAGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTACTTAGCCTGGTTTCTTATAGAACCCAGGACCACCAGCCCAGGGG  250

seq1  TGGCTCTACTCACAATGGGCTGGGACCTTCCCCACCGGTCATTAATTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTACTCACAATGGGCTGGGACCTTCCCCACCGGTCATTAATTAAG  300

seq1  AAAATGCCCTATAATAGACTGATCTTATGGAGGCATTTTCTCAAATGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCCCTATAATAGACTGATCTTATGGAGGCATTTTCTCAAATGGGG  350

seq1  TTCCCTCCTTTCAGATGACGTTAGCTTGTGTCAAGTTGACATAAAACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCTTTCAGATGACGTTAGCTTGTGTCAAGTTGACATAAAACTAG  400

seq1  ACAGCACATACACTTTAAAGCTAGGGATTAGTAGAGAGACTCTGGGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACATACACTTTAAAGCTAGGGATTAGTAGAGAGACTCTGGGTAAT  450

seq1  GTTTAATAACCTCTTCATCTCATTAAGTTCCCAAGTGCTTTTCTCACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATAACCTCTTCATCTCATTAAGTTCCCAAGTGCTTTTCTCACTAA  500

seq1  CTTTGGTGATAGGGAGGTATCCGTGTTTCTTGGTTAACATAGTTATATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTGATAGGGAGGTATCCGTGTTTCTTGGTTAACATAGTTATATCA  550

seq1  TGATTTTCTCTCCTCCTCCTTTTCCTTCTTCCTTCCTCCTCTTCCTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCTCTCCTCCTCCTTTTCCTTCTTCCTTCCTCCTCTTCCTCCTT  600

seq1  CTTTGAAATGCTGAGGCTGGAATTCAGGGTTTTATGTGGATCAGGCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAATGCTGAGGCTGGAATTCAGGGTTTTATGTGGATCAGGCAAAT  650

seq1  GCTCTGTCACTAAGCTAGAGCCCCAGTCTTTTTTACTTTTTATTTTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTCACTAAGCTAGAGCCCCAGTCTTTTTTACTTTTTATTTTGAGA  700

seq1  CAGGTCCTTAATGAATGACACGGGATAGCCTTAAACTGTAGCCTAGGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTTAATGAATGACACGGGATAGCCTTAAACTGTAGCCTAGGCTG  750

seq1  GCCTTCACCTTTTCATCTCCTTGCTTCAGGCTGCTGTGTCACAGGTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCACCTTTTCATCTCCTTGCTTCAGGCTGCTGTGTCACAGGTCTGT  800

seq1  AATACCAGGCTAATTCTTCATCGGTATTACAAATTTCAGGATTACCACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAGGCTAATTCTTCATCGGTATTACAAATTTCAGGATTACCACCA  850

seq1  ATTCAACCTGCTTTCTCTCTGTACTCATAAAAAAGGGGAGTTCTCTTACT  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATTCAACCTGCTTTCTCTCTGTACTCATAAAAAA-GGGAGTTCTCTTACT  899

seq1  GACGTTCAGCTTACCCCCATATTATTGTTAGACTATGAAGGATCCCTTCA  950
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  GACGTTCAGCTTACCCCCATATTATTG-TAGACTATGAA-GATCCCTTCA  947

seq1  GGGTTCATATATGCTGAAATCAGGTGGGACTGTGTGAGGTGACTGGATCA  1000
      |||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  GGGTTCATATATGCTG-AATCA-GTGGGACTGTGTGAGGTGACTGGATCA  995

seq1  GGAGGCTGCTAACCACAATCCATCACATAGCTCTGATTGAAGAAAACAGA  1050
      |   |||||| | ||||   ||||| |||||||||||||||| |||||||
seq2  G--AGCTGCTTA-CACA--TCATCAAATAGCTCTGATTGAAG-AAACAGA  1039

seq1  TTACAGAATGGGGGGCCCTTTGAAGGGTTCATCTTATCTTTGTGCCCCCG  1100
      ||||||||| ||||||||||||||||| |||||||||| ||| |||||||
seq2  TTACAGAAT-GGGGGCCCTTTGAAGGG-TCATCTTATC-TTGGGCCCCCG  1086

seq1: chr3_52686296_52687468
seq2: B6Ng01-169E12.g_69_1229 (reverse)

seq1  AAATTCAGAGTCCGAGCCCAGCAAGA-TGCTCCAGGCTAGACCCAACTTC  49
      |||||||||||||| | ||||||||| |||||||||||||| ||||||||
seq2  AAATTCAGAGTCCG-GGCCAGCAAGAGTGCTCCAGGCTAGA-CCAACTTC  48

seq1  TGTGGGCAAGGAGGATGCACAGGATGGGGTGAACTCTGCCAAACCAG-AG  98
      ||||| |||||||  |||||| ||||||||||||||||||  ||||| ||
seq2  TGTGGCCAAGGAGATTGCACA-GATGGGGTGAACTCTGCC--ACCAGAAG  95

seq1  GGCAGCATTTGTCTTTGAGGAGTTTTAAACATCCAGGTTCTGAAGAATTG  148
      ||||||| |||||||||||||||||||||||||   ||||||||||| ||
seq2  GGCAGCA-TTGTCTTTGAGGAGTTTTAAACATC--AGTTCTGAAGAA-TG  141

seq1  CATGCAGTGAGGGGGTTGGGTTTATCAGTTCAGGTTCTGAGAGCACCAGG  198
      |||||||||||||||||||  ||||||||||||| |||||||||||||||
seq2  CATGCAGTGAGGGGGTTGG--TTATCAGTTCAGG-TCTGAGAGCACCAGG  188

seq1  AGGTTCTGAAGTGTGAAACCGACATACTGTGAAATCCTACTCACCAGACA  248
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGTTCTGAAGTGTGAAACCGACATACTGTG-AATCCTACTCACCAGACA  237

seq1  CACAGCCTTCTAAGGGGGCTCTGTTGCTTGCTAAACATTAAATGCCCCTC  298
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAG-CTTCTAAGGGGGCTCTGTTGCTTGCTAAACATTAAATGCCCCTC  286

seq1  CATTACTGTCAACTCTGCTGGTCCCTGCACTGTGG-CCAGAGCTTGAGGA  347
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CATTACTGTCAACTCTGCTGGTCCCTGCACTGTGGCCCAGAGCTTGAGGA  336

seq1  AGGATGTGATAAACCTGAAAAAGATTGGAGTGCAAGAAGGAACCAAACTT  397
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGGATGTGATAAA-CTGAAAAAGATTGGAGTGCAAGAAGGAACCAAACTT  385

seq1  AGTTAGTTACATCTCTAGACTATGCCCATAAAATTTAGGTTGTGTGCCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTTACATCTCTAGACTATGCCCATAAAATTTAGGTTGTGTGCCAC  435

seq1  AAACTCCTTGTCCAGAAATCCCACATCTCTACCTTAGAGGGAAAAAAAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCTTGTCCAGAAATCCCACATCTCTACCTTAGAGGGAAAAAAAGG  485

seq1  TCTGTCCTTTAGTCAAAGTTAATGGCCCTTCATCTTAGATCATGGCACAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTTTAGTCAAAGTTAATGGCCCTTCATCTTAGATCATGGCACAA  535

seq1  AATTTGGACCTTAATCTGAGTTTTTGCTTACTAGCCTCTACACACTGCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGACCTTAATCTGAGTTTTTGCTTACTAGCCTCTACACACTGCCT  585

seq1  GTAAAGAGAGAACCCCTAGTCTGATATCAGTTCCTGCCCCTGTGGTGCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAGAGAACCCCTAGTCTGATATCAGTTCCTGCCCCTGTGGTGCTG  635

seq1  AAGGTAGCAGATAGGAAAGTGGCTTTAAAAGTATAAAACACGTAAATTCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGCAGATAGGAAAGTGGCTTTAAAAGTATAAAACACGTAAATTCA  685

seq1  TTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTT  735

seq1  CTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGTTTCTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGTTTCTGG  785

seq1  CTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTA  835

seq1  CCAGTTGGGGCTTCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGGGGCTTCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATC  885

seq1  CTCCGGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCC  935

seq1  AGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCT  985

seq1  CTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTT  1035

seq1  AGCCATTCTCACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTCTCACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCA  1085

seq1  TTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCC  1135

seq1  ATTCGGTATTCCTCAGGTGAGAATTC  1173
      ||||||||||||||||||||||||||
seq2  ATTCGGTATTCCTCAGGTGAGAATTC  1161