BAC Information

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BAC

Clone NameB6Ng01-169E23
Chromosome3 (Build37)
Map Location 92,906,254 - 92,907,422
singlet/doubletsinglet
Overlap genenone
Upstream geneA030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571
Downstream geneCrnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169E23.bB6Ng01-169E23.g
ACCDH960323DH960324
length1,1501,059
definitionDH960323|Mus musculus domesticus DNA, BAC clone: B6Ng01-169E23, 5' end.DH960324|Mus musculus domesticus DNA, BAC clone: B6Ng01-169E23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaccagatcccagacagcctgggactttacagcctgggactttac
agccagcacaagtagcctagagactcaagcaggtcacttcttcctcccct
tctgacccctccttttcggatgctcaagccccatggctgctcccagaaac
tgccaccagctgtcctttcaccgtgagaactctccacctactacagtgtc
ctggagaccccatagtcttgccagatacctgacaaggatcctctacttac
tatatctagacctgaaatccagaaccaatctacaccaccaaggaaaagat
tgttccaagctccttggccaagcctctgaatgcatcatactgtacctgac
gagcagaagatagcccgatagaagctgtggccgtaagtggtacacaatca
gaggaaataaacatctggactcactcctgaatagtgtcaacacccagctt
aaagaagaaggcaactagaacaacaacaaaatgaagaaaaagttaaaaca
ttaactccaagtgcacaaattcctaaacaggaaaatgtcaacatgaaaaa
aaaaaaaaaacaaaataacatgtctcctccataaaatacaaatcccatag
tgatggttcctaatgaaaatgacctggaaggacttccagacaaggaattc
aaaaaaatgattgtaactatagatgaaagcaaagttctgggtaaaataag
gaaatcaatccaagacaagaaaatagagtctgactgcttaaagaatatcc
aaactgaaacaatgctgggaaagaaaaagttggtaactcaagtgaagccc
tctgaggaaagcgccaccaacagaatagatcaaatggatcacagagagtt
gctgggcctggtggtgcaggcacaggagaccacggcaggctcttacatgg
gtgtcaggatccaaactcagttccttgtggctgtacagtaagtactttgc
cctccaagccatctcaaactcccagaaggaatttcataatttattagact
taagatctaccaatcccacactcaggagtaaagcaggagggaatctatgg
agtcatggtcaactaatctacatagcaagtttcagccagcaatatgtata
gtaagactttataataaacgttcctgactgctgctagaggggaaattcca

gaattcaatgggcttgtgaactcatctgtatgttgagcctacaactgttc
atggacttgttgtccagtctcagtgggatggaaaagtggagggcttaact
gaagtcctgactgaagcagtctgtgaccatctttgctagtcattttgaag
tttttctagatgtgtatttttgaggaaacagctattgagtcagtctggtc
ctttttttctgaaaacacacaaacttttaaaggtaatagacattttttgc
attaataggtatggaatgtgcagtgtgaacgaatcagatacagaggattc
tctgctctttgtctgagcaggtgaaaggcatcaaactttatgagtctgtt
tggactgtataaccaaactgtaatgtgaatttccatccatgcatttaaaa
ggatggcgtgtaataatacatactgaggactctgtagccaataagattta
ttggctatgtagcaatgtctcaccaagtaacagcagtttctatgtagagg
attcagcattcatgccacctgttttgttattcttcttgatttctttcttc
atgtctgaagtcaagattttcacatatctcctggtcaaatctaatcttta
ttaattttgaaagaaaccacagcttttcatttcctgttgaaacagacaaa
catatttcctgactttcactctgaagttaacagaaattcagtggaaaatc
aggctataaagaggccgtcaagaggctgtcgtctattttattttattcct
ctgagtttttttttctctgatttttttttttaatcacaaacatgagaatt
caatgggcttgtgaactcatctgtatgtttgagcctacaactgttcatgg
actagctctttgagtgctgtaactttcattagtcaaccactagtctatca
gcagtggctcccccatataaaactcaagagtcaacatctgttggtgtcct
gcttatgacaacccggaccgtcttatgaatgtttttgatgatatctttca
tattttcctcaggagcattttttttttttatttattggttttaagttctg
aaaatttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_92906254_92907422
seq2: B6Ng01-169E23.b_44_1193

seq1  GAATTCACCAGATCCCAGACAGCCTGGGACTTTACAGCCTGGGACTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGATCCCAGACAGCCTGGGACTTTACAGCCTGGGACTTTAC  50

seq1  AGCCAGCACAAGTAGCCTAGAGACTCAAGCAGGTCACTTCTTCCTCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCACAAGTAGCCTAGAGACTCAAGCAGGTCACTTCTTCCTCCCCT  100

seq1  TCTGACCCCTCCTTTTCGGATGCTCAAGCCCCATGGCTGCTCCCAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCCCTCCTTTTCGGATGCTCAAGCCCCATGGCTGCTCCCAGAAAC  150

seq1  TGCCACCAGCTGTCCTTTCACCGTGAGAACTCTCCACCTACTACAGTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCAGCTGTCCTTTCACCGTGAGAACTCTCCACCTACTACAGTGTC  200

seq1  CTGGAGACCCCATAGTCTTGCCAGATACCTGACAAGGATCCTCTACTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGACCCCATAGTCTTGCCAGATACCTGACAAGGATCCTCTACTTAC  250

seq1  TATATCTAGACCTGAAATCCAGAACCAATCTACACCACCAAGGAAAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTAGACCTGAAATCCAGAACCAATCTACACCACCAAGGAAAAGAT  300

seq1  TGTTCCAAGCTCCTTGGCCAAGCCTCTGAATGCATCATACTGTACCTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAAGCTCCTTGGCCAAGCCTCTGAATGCATCATACTGTACCTGAC  350

seq1  GAGCAGAAGATAGCCCGATAGAAGCTGTGGCCGTAAGTGGTACACAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAAGATAGCCCGATAGAAGCTGTGGCCGTAAGTGGTACACAATCA  400

seq1  GAGGAAATAAACATCTGGACTCACTCCTGAATAGTGTCAACACCCAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATAAACATCTGGACTCACTCCTGAATAGTGTCAACACCCAGCTT  450

seq1  AAAGAAGAAGGCAACTAGAACAACAACAAAATGAAGAAAAAGTTAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAGGCAACTAGAACAACAACAAAATGAAGAAAAAGTTAAAACA  500

seq1  TTAACTCCAAGTGCACAAATTCCTAAACAGGAAAATGTCAACATGAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCCAAGTGCACAAATTCCTAAACAGGAAAATGTCAACATGAAAAA  550

seq1  AAAAAAAAAACAAAATAACATGTCTCCTCCATAAAATACAAATCCCATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACAAAATAACATGTCTCCTCCATAAAATACAAATCCCATAG  600

seq1  TGATGGTTCCTAATGAAAATGACCTGGAAGGACTTCCAGACAAGGAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTTCCTAATGAAAATGACCTGGAAGGACTTCCAGACAAGGAATTC  650

seq1  AAAAAAATGATTGTAACTATAGATGAAAGCAAAGTTCTGGGTAAAATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGATTGTAACTATAGATGAAAGCAAAGTTCTGGGTAAAATAAG  700

seq1  GAAATCAATCCAAGACAAGAAAATAGAGTCTGACTGCTTAAAGAATATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAATCCAAGACAAGAAAATAGAGTCTGACTGCTTAAAGAATATCC  750

seq1  AAACTGAAACAATGCTGGGAAAGAAAAAGTTGGTAACTCAAGTGAAGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAAACAATGCTGGGAAAGAAAAAGTTGGTAACTCAAGTGAAGCCC  800

seq1  TCTGAGGAAAGCGCCACCAACAGAATAGATCAAATGGATCACAGAGAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGAAAGCGCCACCAACAGAATAGATCAAATGGATCACAGAGAGTT  850

seq1  GCTGGGCCTGGTGGTGCAGGCACAGGAGACCACGGCAGGCTCTTACATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCCTGGTGGTGCAGGCACAGGAGACCACGGCAGGCTCTTACATGG  900

seq1  GTGTCAGGGATCCAAACTCAGTTCCTTGTGGCTGTACAGTAAGTACTTTG  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCA-GGATCCAAACTCAGTTCCTTGTGGCTGTACAGTAAGTACTTTG  949

seq1  CCCTCCAAGCCATCTCAAACTCCCAGAAGGAAATTCCATAAATTTAATTA  1000
      |||||||||||||||||||||||||||||| |||| |||||  || ||||
seq2  CCCTCCAAGCCATCTCAAACTCCCAGAAGG-AATTTCATAA--TTTATTA  996

seq1  GACTTAAGATCTACCAATCCCAACACTCAGGAGGTAAAAGCAGGAGGATA  1050
      ||||||||||||||||||||| |||||||||||   |||||||||||  |
seq2  GACTTAAGATCTACCAATCCC-ACACTCAGGAG--TAAAGCAGGAGGGAA  1043

seq1  TCTATGAGTTCATGGTCAACCTAATCTACATAGCAAGTTTCAGGCCAGGC  1100
      ||||||   |||||||||| |||||||||||||||||||||| |||||  
seq2  TCTATGGAGTCATGGTCAA-CTAATCTACATAGCAAGTTTCA-GCCAG--  1089

seq1  AAATATGTATAGTAAGACCTTATATAATAAAACGTTCCCTGACTGCATGC  1150
       |||||||||||||||||  | |||||| ||||||| ||||||||| |||
seq2  CAATATGTATAGTAAGAC--TTTATAAT-AAACGTT-CCTGACTGC-TGC  1134

seq1  TAAGAGGGAGAAAATTCCA  1169
      | |||||  | ||||||||
seq2  T-AGAGG--GGAAATTCCA  1150