BAC Information

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BAC

Clone NameB6Ng01-169F05
Chromosome14 (Build37)3 (Build37)
Map Location 48,727,583 - 48,728,19695,080,105 - 95,080,448
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2
Downstream genePeli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169F05.bB6Ng01-169F05.g
ACCDH960335DH960336
length1,005470
definitionDH960335|Mus musculus domesticus DNA, BAC clone: B6Ng01-169F05, 5' end.DH960336|Mus musculus domesticus DNA, BAC clone: B6Ng01-169F05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,727,583 - 48,728,196)(95,080,105 - 95,080,448)
sequence
gaattcaattgtatagaacctagtgaggtaggtcctgattaaaagcaatg
tatctaatattttattgactacaagctcaatataaccaagccacttgact
gcgttggatacctgcaactaacagcagaatacacgttcttttcaagcact
caacacactctccatgacagatcaaatgaggtcacaaaacacatcatagc
agacttatcgagactgacataatatcaattagagatctcatctttaatat
gataaaggcaggaattagtctcaggaggtaatttaaaagttcacaaacat
atagatatcaaagagcatagtcttaatcagtgtatcaagaaaaaaataaa
aagaaaagaaaatacggtgctacaagttttaaaaagaagcacaatatcca
aagtttattggatacagtaaaaatgggtgtagtaaagaatagatgtagcc
ttgatgcctacatttttttaattaggtattttcttcatttacatttccag
tgctatcccaaaagtcccccaaccctcccaccccactcccctacccaccc
actcccaattcttggccctggcgttcccctatactgaggcatataaagtt
tgcaagaccaatgggcctctctttccaatgatggctgtctaagccatctt
ctgatagaaacacgagctccggggggtcctggttagttcatattgttgtt
ccacctatagggttgcagatccctttagctccttgggtactttctctagc
tcctccattgggggccctgtgatccatccaatagctaactgtgagtatcc
acttctgtgtttgctagccccggcatagtctcacaagagacagctatatc
aggtccattcagcaaaatcttgctagtgtatgcaatagtgtcagtgtttg
gaggctgataatgggatggatccccggatatggcagtctctagatggtcc
gtcctttcgtttcagctccaaacattgtcttctgtaactctttccatggg
tgttt
ataggcagacaggcatcaagtacacacacacacacacacacagagagaca
gacagacagacagacagacacagactgggtctagtgtggaaaccccaaag
cccaccccagtgacatacttcctccaacagggccacacctccctgtcctt
cccaaacagttcactaactggcattcacacatgcaaatgtgtgctcctat
gggggccattctctcttaaaccaccacagggtatagttgccgaagcttga
ggaacatagctttcatcagagaactcttaggagccccagtcagcaattgg
ataaacaaaagatgcatggttacatgtagctcctgcccaaaaacttcaaa
tatagggtgaggcgagttcaactggatgatgctccgactgggaagaacta
gaatagcgctctctctctctctctctctctctctctctctctctctctct
ctctctctgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_48727583_48728196
seq2: B6Ng01-169F05.b_46_659

seq1  GAATTCAATTGTATAGAACCTAGTGAGGTAGGTCCTGATTAAAAGCAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGTATAGAACCTAGTGAGGTAGGTCCTGATTAAAAGCAATG  50

seq1  TATCTAATATTTTATTGACTACAAGCTCAATATAACCAAGCCACTTGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAATATTTTATTGACTACAAGCTCAATATAACCAAGCCACTTGACT  100

seq1  GCGTTGGATACCTGCAACTAACAGCAGAATACACGTTCTTTTCAAGCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGGATACCTGCAACTAACAGCAGAATACACGTTCTTTTCAAGCACT  150

seq1  CAACACACTCTCCATGACAGATCAAATGAGGTCACAAAACACATCATAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACACTCTCCATGACAGATCAAATGAGGTCACAAAACACATCATAGC  200

seq1  AGACTTATCGAGACTGACATAATATCAATTAGAGATCTCATCTTTAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTATCGAGACTGACATAATATCAATTAGAGATCTCATCTTTAATAT  250

seq1  GATAAAGGCAGGAATTAGTCTCAGGAGGTAATTTAAAAGTTCACAAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGGCAGGAATTAGTCTCAGGAGGTAATTTAAAAGTTCACAAACAT  300

seq1  ATAGATATCAAAGAGCATAGTCTTAATCAGTGTATCAAGAAAAAAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATATCAAAGAGCATAGTCTTAATCAGTGTATCAAGAAAAAAATAAA  350

seq1  AAGAAAAGAAAATACGGTGCTACAAGTTTTAAAAAGAAGCACAATATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAAATACGGTGCTACAAGTTTTAAAAAGAAGCACAATATCCA  400

seq1  AAGTTTATTGGATACAGTAAAAATGGGTGTAGTAAAGAATAGATGTAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATTGGATACAGTAAAAATGGGTGTAGTAAAGAATAGATGTAGCC  450

seq1  TTGATGCCTACATTTTTTTAATTAGGTATTTTCTTCATTTACATTTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCCTACATTTTTTTAATTAGGTATTTTCTTCATTTACATTTCCAG  500

seq1  TGCTATCCCAAAAGTCCCCCAACCCTCCCACCCCACTCCCCTACCCACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCCCAAAAGTCCCCCAACCCTCCCACCCCACTCCCCTACCCACCC  550

seq1  ACTCCCAATTCTTGGCCCTGGCGTTCCCCTATACTGAGGCATATAAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAATTCTTGGCCCTGGCGTTCCCCTATACTGAGGCATATAAAGTT  600

seq1  TGCAAGACCAATGG  614
      ||||||||||||||
seq2  TGCAAGACCAATGG  614

seq1: chr3_95080105_95080448
seq2: B6Ng01-169F05.g_125_542 (reverse)

seq1  ACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AGAGA-------CCCT-------GTCTTGAAA-----AGCAACAAAACAA  81
      |||||       | ||        ||||   |     |||| ||      
seq2  AGAGAGAGAGAGCGCTATTCTAGTTCTTCCCAGTCGGAGCATCA------  94

seq1  AAACAGCACTTGTTCTTGCAGAGGACTCTAGTTTG--GTTT----CCAAC  125
            || |||  || ||      || || ||||  ||||     ||  
seq2  ----TCCAGTTGAACTCGCCTCACCCTATA-TTTGAAGTTTTTGGGCAGG  139

seq1  ATCTACAGAGTGGCTCAAAACCATCCCCTAACATCTAT--TTCAGAGGAT  173
      | |||||   ||      ||||||       ||||| |  || |    ||
seq2  AGCTACA---TG-----TAACCAT------GCATCTTTTGTTTATCCAAT  175

seq1  --CTGAC---ACCTTCT-----TTCTTT--TGAGAGCAA-------CAGG  204
        |||||     || ||     |||| |  ||| ||| |       || |
seq2  TGCTGACTGGGGCTCCTAAGAGTTCTCTGATGAAAGCTATGTTCCTCAAG  225

seq1  CAT--GCA---------TGTGATGTCCGTAT-ATACAGA-------CAAG  235
      | |  |||         |||| ||   || | | | |||       | | 
seq2  CTTCGGCAACTATACCCTGTGGTG---GTTTAAGAGAGAATGGCCCCCAT  272

seq1  AAAAATACTCATACACATAAAAAAAT---AGGTCTAAAAAAATTTGG---  279
      |  |  || |||   |||     |||   || |    ||   |||||   
seq2  AGGAGCACACATTTGCATGTGTGAATGCCAGTTAGTGAACTGTTTGGGAA  322

seq1  -------------------TTTTAGAGAAA---------AAGGAAGACCA  301
                         | || ||| ||           ||  |  | 
seq2  GGACAGGGAGGTGTGGCCCTGTTGGAGGAAGTATGTCACTGGGGTGGGCT  372

seq1  TT--AGTTGAAATAATATATCCTG-AAGTGTCTGTCTGTCTGTCTG  344
      ||   |||   | | || | || |   |||||||||||||||||||
seq2  TTGGGGTTTCCACACTAGACCCAGTCTGTGTCTGTCTGTCTGTCTG  418