BAC Information

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BAC

Clone NameB6Ng01-169I05
Chromosome3 (Build37)
Map Location 114,694,566 - 114,827,101
singlet/doubletdoublet
Overlap geneOlfm3
Upstream geneCol11a1, LOC100043220
Downstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169I05.bB6Ng01-169I05.g
ACCDH960471DH960472
length1,1411,068
definitionDH960471|Mus musculus domesticus DNA, BAC clone: B6Ng01-169I05, 5' end.DH960472|Mus musculus domesticus DNA, BAC clone: B6Ng01-169I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,825,953 - 114,827,101)(114,694,566 - 114,695,653)
sequence
gaattctttttaacatagggaaattacttctaacctcattgacatgttca
taagttgttgattataatttctgtggaattagtaacacaaatgttatcaa
agtttttactttcagtttctttaattttgcgcacacagtgagacaagttc
tcaggggattgaattctcatttaattttctgaattggttatttatacact
tgaaacaaaaataactcccaattcttttcatagttttcttttatacaagc
tttccaataactctccagggtttataattttaatatagaaagcattgaat
aaatttcctctttttaataatcttcatgtgcttcatattgtataagaaat
gacatttttgaaagttgtatgtaagatatgttaaaatattaatatatatg
tatgctactaatactaataatgataagtgaatagaatcatattgagtata
acacagtgacacattttacaaagaattatatgaattcttttaagaaacag
ggtatcactacattgaattggtgttcaaatccagagccaatggtagagtg
ctggataaaacaaaggttgtatatatattatctaatacttttttaaaaaa
tttttgtagtgcttatgagaaggggcaagccaagatgatctttctcaacc
agacttgagaactgacttgagtaattactgagattaaattttagtgcact
ttataaaaaatatgactttcacagaagtgaaggaatacaatatatgatgg
tggttacactggtagaaatatgtattgccaggaaaatgtgagcaagagat
ttagaaatgactgcacagcaccgcatcagagaatatggtaagagtaacat
gattgatagtgtttcccatataaataaaatctttaaatcttcttgtagaa
ataaatggggggaaagtgcttttcttttaccttaatttctatgaaaatat
ttcttgatgtagaccagagacagtaaaaataatgacagttaaaagagaag
acattcatgcatttaagccaccgttattctgattttaataaaggcagaac
attaatctttgcaaaactatgattttggcacttaaactcttttttagtgc
tttcatggagaaggcatgatagcctgtaaattgggatttaa
gaattccaaaacactgaatttatcatcaattattagcaatagagatgaaa
aaccactgaacctcaagctagatttattgcatgtattgcatgtaaactgc
atgctccttctaaaaaattgattattttatttgtttacatttcaaatgtt
gtcctccattccagtctctcctccgcaacccacactccctccccttcccc
tttacctctaagaggttgattcaccacccatccatccactcccttctcac
ccctctagcatccctctacactggggcaacaagcctccacaggaccaaca
accttccctcccatgaaggcagagtaagtcaatactctgctacatatgta
gctggagctatggacataccaatatgtactctttggttggtagtttagtc
cctgggagctctgggggatccagtttgttgatattgttgttctttctcta
aggttccaatagcctttagctccttgagtttttcccctaactcttccatt
ggggttcctaggctcagtccaatagttagctgtgagtatctgcatctgta
ttagtcaggtgctggcagaactctttaaagatgggtttcacattcttttt
atttcccttttcaggttttctttaatttttgattagatattttctttatt
tacatttcaaatgttatcccctttcctagtttcccctccgaaaaaccttc
cccctctccctactcaccatcccacccgctcactcttcctggccctggca
gtcgcatatactggggcatacatagaaccttcacaggaccaagggcctct
catctcattgatgtcagacaaggtcatcctctgctacatatgcagctaga
gacatgagtctcaccatctgcagctagagacatgagtcccaccatggtgt
tttttttggtgtttgtttgttgtttgtttgtttggtggtggtagtcccag
gaagctctggagatactgatagttctggtggtgttcctctttgggatgca
aaccctcagctctggtactttcttaagtccgcatgggaccctgtgctcga
gccaaggatggctgtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_114825953_114827101
seq2: B6Ng01-169I05.b_47_1187 (reverse)

seq1  TTAAATCCCAAATTTACAGGGCCTATCATGCCCTTCT-CATGAAAAGCAC  49
      ||||||||| ||||||||||  |||||||| |||||| |||| |||||||
seq2  TTAAATCCC-AATTTACAGG--CTATCATG-CCTTCTCCATG-AAAGCAC  45

seq1  T-AAAAAGAGTTTAAGTGGCCAGAATCATAGTTTTGCAAAAGATTAATGA  98
      | ||||||||||||||| |||| |||||||||||||| ||||||||||| 
seq2  TAAAAAAGAGTTTAAGT-GCCAAAATCATAGTTTTGC-AAAGATTAATGT  93

seq1  TCTGCCTTGTATTAGAATCAGATTAACGGTGGCTTAAATGCATGAATGTC  148
      |||||||| ||||| ||||||| |||||||||||||||||||||||||||
seq2  TCTGCCTT-TATTAAAATCAGAATAACGGTGGCTTAAATGCATGAATGTC  142

seq1  TTCTCTTTTTAACTGTCATTATTTTTACTGTCTCTTGGTCTACATCAAGA  198
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCTC-TTTTAACTGTCATTATTTTTACTGTCTC-TGGTCTACATCAAGA  190

seq1  AATATTTTCATAGAAATTAAGGTAAAAGAAAAGCACTTTCCCCCCATTTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTCATAGAAATTAAGGTAAAAGAAAAGCACTTTCCCCCCATTTA  240

seq1  TTTCTACAAGAAGATTTAAAGATTTTATTTATATGGGAAACACTATCAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACAAGAAGATTTAAAGATTTTATTTATATGGGAAACACTATCAAT  290

seq1  CATGTTACTCTTACCATATTCTCTGATGCGGTGCTGTGCAGTCATTTCTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTACTCTTACCATATTCTCTGATGCGGTGCTGTGCAGTCATTTCTA  340

seq1  AATCTCTTGCTCACATTTTCCTGGCAATACATATTTCTACCAGTGTAACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTTGCTCACATTTTCCTGGCAATACATATTTCTACCAGTGTAACC  390

seq1  ACCATCATATATTGTATTCCTTCACTTCTGTGAAAGTCATATTTTTTATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATATATTGTATTCCTTCACTTCTGTGAAAGTCATATTTTTTATA  440

seq1  AAGTGCACTAAAATTTAATCTCAGTAATTACTCAAGTCAGTTCTCAAGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCACTAAAATTTAATCTCAGTAATTACTCAAGTCAGTTCTCAAGTC  490

seq1  TGGTTGAGAAAGATCATCTTGGCTTGCCCCTTCTCATAAGCACTACAAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAGAAAGATCATCTTGGCTTGCCCCTTCTCATAAGCACTACAAAA  540

seq1  ATTTTTTAAAAAAGTATTAGATAATATATATACAACCTTTGTTTTATCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAAAAAGTATTAGATAATATATATACAACCTTTGTTTTATCCA  590

seq1  GCACTCTACCATTGGCTCTGGATTTGAACACCAATTCAATGTAGTGATAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTACCATTGGCTCTGGATTTGAACACCAATTCAATGTAGTGATAC  640

seq1  CCTGTTTCTTAAAAGAATTCATATAATTCTTTGTAAAATGTGTCACTGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCTTAAAAGAATTCATATAATTCTTTGTAAAATGTGTCACTGTG  690

seq1  TTATACTCAATATGATTCTATTCACTTATCATTATTAGTATTAGTAGCAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTCAATATGATTCTATTCACTTATCATTATTAGTATTAGTAGCAT  740

seq1  ACATATATATTAATATTTTAACATATCTTACATACAACTTTCAAAAATGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATTAATATTTTAACATATCTTACATACAACTTTCAAAAATGT  790

seq1  CATTTCTTATACAATATGAAGCACATGAAGATTATTAAAAAGAGGAAATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTATACAATATGAAGCACATGAAGATTATTAAAAAGAGGAAATT  840

seq1  TATTCAATGCTTTCTATATTAAAATTATAAACCCTGGAGAGTTATTGGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATGCTTTCTATATTAAAATTATAAACCCTGGAGAGTTATTGGAA  890

seq1  AGCTTGTATAAAAGAAAACTATGAAAAGAATTGGGAGTTATTTTTGTTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTATAAAAGAAAACTATGAAAAGAATTGGGAGTTATTTTTGTTTC  940

seq1  AAGTGTATAAATAACCAATTCAGAAAATTAAATGAGAATTCAATCCCCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTATAAATAACCAATTCAGAAAATTAAATGAGAATTCAATCCCCTG  990

seq1  AGAACTTGTCTCACTGTGTGCGCAAAATTAAAGAAACTGAAAGTAAAAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTGTCTCACTGTGTGCGCAAAATTAAAGAAACTGAAAGTAAAAAC  1040

seq1  TTTGATAACATTTGTGTTACTAATTCCACAGAAATTATAATCAACAACTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAACATTTGTGTTACTAATTCCACAGAAATTATAATCAACAACTT  1090

seq1  ATGAACATGTCAATGAGGTTAGAAGTAATTTCCCTATGTTAAAAAGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATGTCAATGAGGTTAGAAGTAATTTCCCTATGTTAAAAAGAATT  1140

seq1  C  1149
      |
seq2  C  1141

seq1: chr3_114694566_114695653
seq2: B6Ng01-169I05.g_67_1134

seq1  GAATTCCAAAACACTGAATTTATCATCAATTATTAGCAATAGAGATGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAACACTGAATTTATCATCAATTATTAGCAATAGAGATGAAA  50

seq1  AACCACTGAACCTCAAGCTAGATTTATTGCATGTATTGCATGTAAACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTGAACCTCAAGCTAGATTTATTGCATGTATTGCATGTAAACTGC  100

seq1  ATGCTCCTTCTAAAAAATTGATTATTTTATTTGTTTACATTTCAAATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCTTCTAAAAAATTGATTATTTTATTTGTTTACATTTCAAATGTT  150

seq1  GTCCTCCATTCCAGTCTCTCCTCCGCAACCCACACTCCCTCCCCTTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCATTCCAGTCTCTCCTCCGCAACCCACACTCCCTCCCCTTCCCC  200

seq1  TTTACCTCTAAGAGGTTGATTCACCACCCATCCATCCACTCCCTTCTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTCTAAGAGGTTGATTCACCACCCATCCATCCACTCCCTTCTCAC  250

seq1  CCCTCTAGCATCCCTCTACACTGGGGCAACAAGCCTCCACAGGACCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTAGCATCCCTCTACACTGGGGCAACAAGCCTCCACAGGACCAACA  300

seq1  ACCTTCCCTCCCATGAAGGCAGAGTAAGTCAATACTCTGCTACATATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCCTCCCATGAAGGCAGAGTAAGTCAATACTCTGCTACATATGTA  350

seq1  GCTGGAGCTATGGACATACCAATATGTACTCTTTGGTTGGTAGTTTAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGCTATGGACATACCAATATGTACTCTTTGGTTGGTAGTTTAGTC  400

seq1  CCTGGGAGCTCTGGGGGATCCAGTTTGTTGATATTGTTGTTCTTTCTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAGCTCTGGGGGATCCAGTTTGTTGATATTGTTGTTCTTTCTCTA  450

seq1  AGGTTCCAATAGCCTTTAGCTCCTTGAGTTTTTCCCCTAACTCTTCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCAATAGCCTTTAGCTCCTTGAGTTTTTCCCCTAACTCTTCCATT  500

seq1  GGGGTTCCTAGGCTCAGTCCAATAGTTAGCTGTGAGTATCTGCATCTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCCTAGGCTCAGTCCAATAGTTAGCTGTGAGTATCTGCATCTGTA  550

seq1  TTAGTCAGGTGCTGGCAGAACTCTTTAAAGATGGGTTTCACATTCTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAGGTGCTGGCAGAACTCTTTAAAGATGGGTTTCACATTCTTTTT  600

seq1  ATTTCCCTTTTCAGGTTTTCTTTAATTTTTGATTAGATATTTTCTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCTTTTCAGGTTTTCTTTAATTTTTGATTAGATATTTTCTTTATT  650

seq1  TACATTTCAAATGTTATCCCCTTTCCTAGTTTCCCCTCCGAAAAACCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCAAATGTTATCCCCTTTCCTAGTTTCCCCTCCGAAAAACCTTC  700

seq1  CCCCTCTCCCTACTCACCATCCCACCCGCTCACTCTTCCTGGCCCTGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCCCTACTCACCATCCCACCCGCTCACTCTTCCTGGCCCTGGCA  750

seq1  GTCGCATATACTGGGGCATACATAGAACCTTCACAGGACCAAGGGCCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCATATACTGGGGCATACATAGAACCTTCACAGGACCAAGGGCCTCT  800

seq1  CATCTCATTGATGTCAGACAAGGTCATCCTCTGCTACATATGCAGCTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCATTGATGTCAGACAAGGTCATCCTCTGCTACATATGCAGCTAGA  850

seq1  GACATGAGTCTCACCATCTGCAGCTAGAGACATGAGTCCCACCATGGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GACATGAGTCTCACCATCTGCAGCTAGAGACATGAGTCCCACCATGGTG-  899

seq1  TTTTTTTTGGTGTTTGTTTGTTTGTTTGTTTGTTTTGGTTGGTGGTTTAG  950
      |||||||||||||||||||| ||||||||||||||  | ||||||  |||
seq2  TTTTTTTTGGTGTTTGTTTG-TTGTTTGTTTGTTT--GGTGGTGG--TAG  944

seq1  TCCCAGGAAGCTCTGGAGATACTGGTTAGTTCCTGTTGTTGTTCCTCCTT  1000
      ||||||||||||||||||||||| | ||||| ||| || ||||||| |||
seq2  TCCCAGGAAGCTCTGGAGATACT-GATAGTT-CTGGTGGTGTTCCT-CTT  991

seq1  TGGGATTGCAAACCCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCGTCA  1050
      ||||| |||||||||  |||||||    |||||||||| ||  |||| ||
seq2  TGGGA-TGCAAACCC--TCAGCTC---TGGTACTTTCT-TAAGTCCG-CA  1033

seq1  TTGGGGACCCTGTGCTCAGTCCAATGGATGGCTGTGAG  1088
      |  ||||||||||||||   |||| |||||||||||||
seq2  T--GGGACCCTGTGCTCGAGCCAA-GGATGGCTGTGAG  1068