BAC Information

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BAC

Clone NameB6Ng01-169J11
Chromosome3 (Build37)
Map Location 10,527,401 - 10,528,431
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp704, Pag1, LOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16
Downstream geneLOC670564, LOC383826, EG667978
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169J11.g
ACCDH960530
length1,074
definitionDH960530|Mus musculus domesticus DNA, BAC clone: B6Ng01-169J11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccctgtttagatccgtactccatttttaaattgtgttatttgggc
tgttggtatctaaattcttgagttctttgtttgttttggatattaaccct
ctgtgagatgtagcattattgaaggtcctttccccatctttaggctgcta
tttggtcttgtccatggtgttctatgccttacagaagtttttcagtttca
tgaggttccatttattaactgttgatcttagtgcctgacctattggaata
caaagctaatctccgtgttcgcaattcttagagttaatgtatctggtttt
attttgaggtctttgatgcacttggacttgagttttgtgaagggggaccg
aaaatcatttatttgcattattctaaatgcacgcgtgtgggtttatttct
gacccttctatttctttccattgatcaccctgtctgttcctataccaata
caatacagcttttattactattgctctgtagtcacctcgaggcaaaatat
ggtgagtgttcaaacaaaaatattattctatatccgcacgtagcttaata
tgagtcaaattaaaatcctacgataagctgctttcccacacctctccacc
acaaatcctcccacatgagtttctttacacttttgtgttacattcctgtg
gcaacccatcaaaccaatcagaggcgcactgagtaaaataaaagaaattt
tatattgtaaaattctgagtgttataagtataaaattattatcacctagt
tgaaatggaggtgctcgtagaggaaaacacctttggaggataattcctac
gtcatccacacccaaagcattacaacatttctttctgtgcttagtacctt
ttgtgaatagggaagcatttgagaatacacgttgttgtctagatgatgat
gggtccagactcctgtgtatggctgcattgctagactttgagtctgttgg
tcatgaggtcttctctgtctctctagatataaaccaactggcttcttctt
aaatctaaacctttttttggagaagtatgcatggagattgtagtataggc
ataatttcgtgtcctcacccttca
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_10527401_10528431
seq2: B6Ng01-169J11.g_118_1140

seq1  GTTGGTATCTAAATTCTTGAGTTCTTTGTTTGTTTTGGATATTAACCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTATCTAAATTCTTGAGTTCTTTGTTTGTTTTGGATATTAACCCTC  50

seq1  TGTTAGATGTAGCATTAGTGAAGGTCCTTTCCCAATCTTTAGGCTGCTAT  100
      ||| ||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  TGTGAGATGTAGCATTATTGAAGGTCCTTTCCCCATCTTTAGGCTGCTAT  100

seq1  TTTGTCTTGTTGATGGTGTTCTATGCCTTACAGAAGTTTTTCAGTTTCAT  150
      || |||||||  ||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTGTCCATGGTGTTCTATGCCTTACAGAAGTTTTTCAGTTTCAT  150

seq1  GAGGTTCCATTTATTAACTGTTGATCTTAGTGCCTGAGCTATTGGAGTCC  200
      ||||||||||||||||||||||||||||||||||||| |||||||| | |
seq2  GAGGTTCCATTTATTAACTGTTGATCTTAGTGCCTGACCTATTGGAATAC  200

seq1  AAAGCTATTCTCCATGTTCTCTTTTATTAGATTTAATGTATCTGGTTTTA  250
      ||||||| ||||| ||||| |  || ||||| ||||||||||||||||||
seq2  AAAGCTAATCTCCGTGTTCGCAATTCTTAGAGTTAATGTATCTGGTTTTA  250

seq1  TGTTGAGGTCTTTGATGCACTTGGACTTGAGTTTTGTGTAGGGTGACAGA  300
      | |||||||||||||||||||||||||||||||||||| |||| ||| ||
seq2  TTTTGAGGTCTTTGATGCACTTGGACTTGAGTTTTGTGAAGGGGGACCGA  300

seq1  TATACATTTATTTGCATTATTCTAAATGCAGGCGTGTGGGTTTATTTCTG  350
       |  |||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAATCATTTATTTGCATTATTCTAAATGCACGCGTGTGGGTTTATTTCTG  350

seq1  AGTCTTCAATTCAATTCCATTGATCACCCTGTCTGTTTCTATACCAATAC  400
      |  |||| |||   ||||||||||||||||||||||| ||||||||||||
seq2  ACCCTTCTATTTCTTTCCATTGATCACCCTGTCTGTTCCTATACCAATAC  400

seq1  AATACAGCTTTTATTACTATTGCTCTGTAGTACAGCTTGAGGTCAAATAT  450
      ||||||||||||||||||||||||||||||| || || ||||  ||||||
seq2  AATACAGCTTTTATTACTATTGCTCTGTAGT-CACCTCGAGGCAAAATAT  449

seq1  GGTGAGTATTTTAATAAAAATATTATTCAATAACTGCACATAGCTTAAGA  500
      ||||||| ||  || ||||||||||||| ||| | |||| |||||||| |
seq2  GGTGAGTGTTCAAACAAAAATATTATTCTATATCCGCACGTAGCTTAATA  499

seq1  TGAGTCAAATTAAAATCCTACGATAAGCTGCTTTCCCACACCTCTCCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCAAATTAAAATCCTACGATAAGCTGCTTTCCCACACCTCTCCACC  549

seq1  ACAAATCCTCCCACATGAGTTTCTTTACACTTTTGTGTTACATTCCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCCTCCCACATGAGTTTCTTTACACTTTTGTGTTACATTCCTGTG  599

seq1  GCAACCAAGCAAACCAATTATAAACTCACTGAATTAAATAAAAGAAATAT  650
      |||||| | ||||||||| | |  | |||||| | ||||||||||||| |
seq2  GCAACCCATCAAACCAATCAGAGGCGCACTGAGTAAAATAAAAGAAATTT  649

seq1  AATATTTTAAAATTCTGAAGGTTATAAGTATAAAATTATTATCACAAAGT  700
       ||||| |||||||||||  |||||||||||||||||||||||||  |||
seq2  TATATTGTAAAATTCTGAGTGTTATAAGTATAAAATTATTATCACCTAGT  699

seq1  TGAAATGGAGGTGCTGGTAGAGGAAAACACCTTTGGAGGATAATTCCTAC  750
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAAATGGAGGTGCTCGTAGAGGAAAACACCTTTGGAGGATAATTCCTAC  749

seq1  TTCATCCAGACCCAAAAGCATTACAAACATTTCTTTCTGTGCTTAGTAGC  800
       ||||||| |||| |||||||||| ||||||||||||||||||||||| |
seq2  GTCATCCACACCC-AAAGCATTAC-AACATTTCTTTCTGTGCTTAGTACC  797

seq1  TTTTGTGAATAGGTAAGCAATTGAGAATACACGTTGTTGTCTAGATGATG  850
      ||||||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  TTTTGTGAATAGGGAAGCATTTGAGAATACACGTTGTTGTCTAGATGATG  847

seq1  ATGGTTCCAGACTTCCTGTGTTATGGCTGCATTGCTAGACTTTGAGTCTG  900
      |||| ||||||| ||||||| |||||||||||||||||||||||||||||
seq2  ATGGGTCCAGAC-TCCTGTG-TATGGCTGCATTGCTAGACTTTGAGTCTG  895

seq1  -TGGTCATGAGGTCTTCTCTGTCTCTGCATGATATTAACCAACTGCCTTC  949
       ||||||||||||||||||||||||| |  ||||| ||||||||| ||||
seq2  TTGGTCATGAGGTCTTCTCTGTCTCT-CTAGATATAAACCAACTGGCTTC  944

seq1  TTCTTAAATCTAAACCTTTTTTT-GAGAATGTAATGCATGAGTATTGTAT  998
      ||||||||||||||||||||||| ||||| || |||||||   |||||| 
seq2  TTCTTAAATCTAAACCTTTTTTTGGAGAA-GT-ATGCATGGAGATTGTAG  992

seq1  TTTATGCATAATTTTCATTGTCTTCACCCTTCA  1031
      | || |||||||||    |||| ||||||||||
seq2  TATAGGCATAATTT--CGTGTCCTCACCCTTCA  1023