BAC Information

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BAC

Clone NameB6Ng01-170C16
Chromosome3 (Build37)
Map Location 41,059,224 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170C16.bB6Ng01-170C16.g
ACCDH960948DH960949
length996946
definitionDH960948|Mus musculus domesticus DNA, BAC clone: B6Ng01-170C16, 5' end.DH960949|Mus musculus domesticus DNA, BAC clone: B6Ng01-170C16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctctgagctactttttaaaatggtgttatttgatt
ttctggagtccaccttcttgagttctttatatgtattcaatattactccc
ctatctaatttaggataggtaaagatcctttcccaatctttacgtggcct
ttttgtcttattgacagtgtcttttgccttgcagaagttttttaagttta
tgaggtcccatttgtcgattctcaatcttacagcacaagtcattgctgtt
ctatgtattttcaacctgtacccatatcttccaggcttttccccactttc
tcctctataaatttcagtgtctctggttttatgtggagttccttaatcca
cttagatttgaccttaatacaaggaaataggaatggaacaattcacattc
ttgtacatgataaccgccagttgtgccagcaccatttgttgaaaatgctg
tctttttttccactggatggttttagctcccttgtcaaagatcaagtgaa
aaaggtgtgtgggttcatttctgggtcttcaattctattccattggtcta
cttgtctgtcgctataccactaccatgcagtttttatcacaattgctctg
tagtacagctttaggtcaggcatggtgattccaccagaggttttttatct
ttgagcagagtttttgctatgctaggttatttgttattccagatgaattt
gcagattaccctttctaattcgttaaagaattgtgttttgatggggattg
cattgaatctgtagactactttggcaagataaccatttttgctatcttga
tcctgccaatccatgagcatgggagatctttccatcttctgagatcttct
ttaatttatttcttcagagacttgaagttcttatcatccagatctttcac
ttccttagttagagtcatgccaaggtattttatattatttgtaattattg
agaaggtgtcatttccttaaattctttctcagcctggtttatcctt
gaattcctcttgtcaaaaggaaattcatggacaatgagtggagcagaaac
aggaggaaaggccatccacagactgccccacctagggatccatctcattt
gctgacaccaaactcagacactattgctgatgccaaaaagtgactacaga
aaggagcccagtatatctgtcccctgagagacactgccagagttgaacca
atatagatgcagctatacacagacaaacattggactgagcatgtggaacc
caatgggaaagataaggcaaagactgtaggagctgagggattagcaacct
cataggaagaacaataacaaccaaccagaccctataaagctcccaaggac
taaatcacaaaccaaagaatacacttgaggtaccaatggctccatctgga
tatgtagcagagtattaccttatctagcatcactgggaggagagtccctt
ggtcttgtggaggcttgatgacccaggacagggaaatactaggtcactga
ggtggggctgggagaaccctcatagaagcaaggggagggaggtcttatgg
agtggagattgggaaggaggattacgtttgagatgtaaagaaataaaata
accaataaaaaaataaagaaagagcttctaaggcaggcctcattttcagg
ctccagacatccaggcaccttccctgtcagaggagaggtgtccacccagc
ccaggaagcccttgcgggaacatctgcctgagacatcttggttcccggat
cctgtcaagactactctgcacatggtgagagtgtggactacagaagctaa
cagctttctgggtcaggcgggagccaaagatcttctaaggaggccccatt
tcaggctcaagcatccaggcacttccctgccagagaaaggggtcaccaca
cccgggagggtttgccagatatctgcagagccttttatccccatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-170C16.b_49_559 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      |||||||||| |  |||||||||||| |||||||||||||||||||||||
seq2  CCACACACCT-TTTTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCA  49

seq1  GTGG-AAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTG  99
      |||| ||||||||||||||||||||||||||||||||||||||||||  |
seq2  GTGGAAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCGG  99

seq1  TTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAA  149
      |||||||||| ||||||| |||||| |||| |||||| |||||||| |||
seq2  TTATCATGTACAAGAATGTGAATTGTTCCATTCCTATTTCCTTGTATTAA  149

seq1  GGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGA  199
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  GGTCAAATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACACTGA  199

seq1  AACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGG  249
      || |||||||||||||||||||||||||||| ||||||||||  ||||| 
seq2  AATTTATAGAGGAGAAAGTGGGGAAAAGCCTGGAAGATATGGGTACAGGT  249

seq1  GAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAAT  299
        ||||    | ||||||||||||||| ||||||||||||||||||||||
seq2  TGAAAA----TACATAGAACAGCAATGACTTGTGCTGTAAGATTGAGAAT  295

seq1  AGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACA  349
       ||||||||||||||||| ||  |  ||| ||||||||||||||||||||
seq2  CGACAAATGGGACCTCATAAACTTAAAAAACTTCTGCAAGGCAAAAGACA  345

seq1  CCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACC  398
      | |||||||||||||||||| |||  | ||||||||||||||||||||||
seq2  CTGTCAATAAGACAAAAAGGCCACGTAAAGATTGGGAAAGGATCTTTACC  395

seq1  TATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAA  448
      |||||||||| |||||||||| ||||||  |||| |||| ||||||||||
seq2  TATCCTAAATTAGATAGGGGAGTAATATTGAATACATATAAAGAACTCAA  445

seq1  GAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAG  498
      ||||||||| |||||||||||||||||| |||||  |||| |  ||||||
seq2  GAAGGTGGACTCCAGAAAATCAAATAACACCATTTTAAAAAGTAGCTCAG  495

seq1  AGCTAAACAAAGAATT  514
      ||||||||||||||||
seq2  AGCTAAACAAAGAATT  511