BAC Information

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BAC

Clone NameB6Ng01-170M18
Chromosome3 (Build37)
Map Location 138,244,123 - 138,383,771
singlet/doubletdoublet
Overlap geneLOC668881, LOC668882, Ppia-ps3_1437.1
Upstream geneDdit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570
Downstream geneTspan5, LOC620771, Rap1gds1, EG229879, B930007M17Rik, LOC100039840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170M18.bB6Ng01-170M18.g
ACCDH961419DH961420
length1,092984
definitionDH961419|Mus musculus domesticus DNA, BAC clone: B6Ng01-170M18, 5' end.DH961420|Mus musculus domesticus DNA, BAC clone: B6Ng01-170M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,244,123 - 138,245,217)(138,382,783 - 138,383,771)
sequence
gaattccaggtctgtaaaacaacctgcactgctccttccttcccccatca
gcttgtatggatcaagacagatatcacaaaattgctttggcccaagaacc
agctgctatttcaaggtaggagatgggtgaagggccacccttctcggaca
gccaggaccctggtaggcacatggccaactagctcttctggctggtcttt
gtaagctttcttttaagtattgctatttatttgacatttttcattctttt
tccaccttactggctccttttcctttttcccttcacaattacaatacaca
atttattcccttgaatatcatatcctaaagggaaagccagactccaaatc
acataaaatcctttcgaagagaccatgccagtgagggaggagctggcttc
cctgggaaggagtaagggggaaagggcaggtgagggggcgcatgtcctgc
tgccggtttggatccgggacattaagcttctttcgctgttgcctcagtcc
atcaaggaagcacttcgagtcaattatccttagaatgttccttctgtgcc
actgtgacttggtgacatttccctgggctgcttctcatgacctatttata
ggacctgttttaaaaatatacttggtttgacactttagataaactattag
aactgtggcaatctgggtagaaaaggttatgaaaattaatagaaagtaaa
caaatagaacatggtttatgatttccatagtcaccaacagcctagcccct
tcctctggcagtgaccatggggcccgaagcatttctgtctcagctcagtg
ctggttagactccaagacaccttccctactgtcactcccattagtcttcc
tggcctgactttgtttccttccccatgaacaccactgccttccacggggg
ctcttcccttctacaccatacatgcagggagggtccttagtttctagttc
ccacagctccatgcctgggacttcgtgagactccgtaatttcttcaaaac
tcttctggtgcactggaaccctctctgcagacaggcatttctaaaggaat
tggcttttgtctttgcaacaaaatgaaagtcaaggcttgatg
gaattcaaagcaaagacttctgcaggaaataggggcattttgaaaaatgg
aatttctgcaaatactagcacagaatgagatgggaaaggtccgtgaagct
cagatgagggataaccaggggactgtggtccagactatcacgcaggactt
tcttccatgaggccatttctttattctatttactcattcatccatcagtt
cggccagtatatgccagacactaagcaagccatgagggataccttagcta
aaattgagcagcgaagggaagtgtgccttcagagaacgtatcatcttggc
aaacttcacaccaaagtaataataatacccactattgtttaaattcaaat
gaactaagtactgaaagttaagttttgagacccactaaagtgaacatcag
aagaatctcagagatggaatccttctttgggtttccagaagaattggcat
ttttaaggaaattttaaaggtaaaaaaattatagaactaagatgagcact
gtttccagtttcctagttcagaaggaactgaatcgtttgtggctcagtga
atgtataacagatatgtgttctatatacttaatttaaatataaatatagt
ttcatttcattgtgtgaatctcatcataaatagaattaacacattctatt
attttcataaagacacatttattatttttataaagacctaagttttgctg
gatactcgggctagaagaaatttctcatgtacttagtccagactgtagtg
tttaacaaagcttacccctgtctgggtattttaatcattgctacaacatc
agcataggtataggcatctccacaccatgcaatatgtatttagtacacgc
taatttctgggtttgcacctggggagaagaagccagacaaggtctttaat
tttatggcatttaaacatagtatgaagttaacttctgttcagatgatcta
gacgaaatcttccataacatatataagaattatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_138244123_138245217
seq2: B6Ng01-170M18.b_42_1133

seq1  GAATTCCAGGTCTGTAAAACAACCTGCACTGCTCCTTCCTTCCCCCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCTGTAAAACAACCTGCACTGCTCCTTCCTTCCCCCATCA  50

seq1  GCTTGTATGGATCAAGACAGATATCACAAAATTGCTTTGGCCCAAGAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTATGGATCAAGACAGATATCACAAAATTGCTTTGGCCCAAGAACC  100

seq1  AGCTGCTATTTCAAGGTAGGAGATGGGTGAAGGGCCACCCTTCTCGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTATTTCAAGGTAGGAGATGGGTGAAGGGCCACCCTTCTCGGACA  150

seq1  GCCAGGACCCTGGTAGGCACATGGCCAACTAGCTCTTCTGGCTGGTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGACCCTGGTAGGCACATGGCCAACTAGCTCTTCTGGCTGGTCTTT  200

seq1  GTAAGCTTTCTTTTAAGTATTGCTATTTATTTGACATTTTTCATTCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTTTCTTTTAAGTATTGCTATTTATTTGACATTTTTCATTCTTTT  250

seq1  TCCACCTTACTGGCTCCTTTTCCTTTTTCCCTTCACAATTACAATACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTTACTGGCTCCTTTTCCTTTTTCCCTTCACAATTACAATACACA  300

seq1  ATTTATTCCCTTGAATATCATATCCTAAAGGGAAAGCCAGACTCCAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCCCTTGAATATCATATCCTAAAGGGAAAGCCAGACTCCAAATC  350

seq1  ACATAAAATCCTTTCGAAGAGACCATGCCAGTGAGGGAGGAGCTGGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATCCTTTCGAAGAGACCATGCCAGTGAGGGAGGAGCTGGCTTC  400

seq1  CCTGGGAAGGAGTAAGGGGGAAAGGGCAGGTGAGGGGGCGCATGTCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAAGGAGTAAGGGGGAAAGGGCAGGTGAGGGGGCGCATGTCCTGC  450

seq1  TGCCGGTTTGGATCCGGGACATTAAGCTTCTTTCGCTGTTGCCTCAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGGTTTGGATCCGGGACATTAAGCTTCTTTCGCTGTTGCCTCAGTCC  500

seq1  ATCAAGGAAGCACTTCGAGTCAATTATCCTTAGAATGTTCCTTCTGTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGAAGCACTTCGAGTCAATTATCCTTAGAATGTTCCTTCTGTGCC  550

seq1  ACTGTGACTTGGTGACATTTCCCTGGGCTGCTTCTCATGACCTATTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGACTTGGTGACATTTCCCTGGGCTGCTTCTCATGACCTATTTATA  600

seq1  GGACCTGTTTTAAAAATATACTTGGTTTGACACTTTAGATAAACTATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGTTTTAAAAATATACTTGGTTTGACACTTTAGATAAACTATTAG  650

seq1  AACTGTGGCAATCTGGGTAGAAAAGGTTATGAAAATTAATAGAAAGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGGCAATCTGGGTAGAAAAGGTTATGAAAATTAATAGAAAGTAAA  700

seq1  CAAATAGAACATGGTTTATGATTTCCATAGTCACCAACAGCCTAGCCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGAACATGGTTTATGATTTCCATAGTCACCAACAGCCTAGCCCCT  750

seq1  TCCTCTGGCAGTGACCATGGGGCCCGAAGCATTTCTGTCTCAGCTCAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGCAGTGACCATGGGGCCCGAAGCATTTCTGTCTCAGCTCAGTG  800

seq1  CTGGTTAGACTCCAAGACACCTTCCCTACTGTCACTCCCATTAGCCTTCC  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGGTTAGACTCCAAGACACCTTCCCTACTGTCACTCCCATTAGTCTTCC  850

seq1  TGGCCTGACCTTTGTTTCCTTCCCCATGAACACCACTGCCTTCCACGGGG  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGA-CTTTGTTTCCTTCCCCATGAACACCACTGCCTTCCACGGGG  899

seq1  GCTCTTCCCTTCTACACCATACATGCAGGGAGGGTCCTTAGGTTTCTAGG  950
      |||||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  GCTCTTCCCTTCTACACCATACATGCAGGGAGGGTCCTTA-GTTTCTA-G  947

seq1  TCCCCACAGCTCCATGCCTGGGACTTCGTGAGACTCCGTACTTTCTTCCA  1000
      | |||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  TTCCCACAGCTCCATGCCTGGGACTTCGTGAGACTCCGTAATTTCTT-CA  996

seq1  AAACTCCTCT-GTGCACTGGACCCCTCTCCGCAGACAGCCATTCCT-AAG  1048
      |||||| ||| |||||||||| ||||||| |||||||| |||| || |||
seq2  AAACTCTTCTGGTGCACTGGAACCCTCTCTGCAGACAGGCATTTCTAAAG  1046

seq1  GCATTGGCTCTTCGTCCTTGCAACAAAATGAACGTCAGTGCTTGATG  1095
      | ||||||| || ||| ||||||||||||||| ||||  ||||||||
seq2  GAATTGGCT-TTTGTCTTTGCAACAAAATGAAAGTCAAGGCTTGATG  1092

seq1: chr3_138382783_138383771
seq2: B6Ng01-170M18.g_70_1053 (reverse)

seq1  GATAATTCTTATATATTGTTATGGAGATTTTCGTCTAGATCATCTGAAAC  50
      ||||||||||||||| |||||||||   |||||||||||||||||| |||
seq2  GATAATTCTTATATA-TGTTATGGAAGATTTCGTCTAGATCATCTG-AAC  48

seq1  AGAAGTTAACTTCATACTATGTTTTAAAATGCCATAAAAATTAAAGACCT  100
      ||||||||||||||||||||||||  ||||||||| ||||||||||||||
seq2  AGAAGTTAACTTCATACTATGTTT--AAATGCCAT-AAAATTAAAGACCT  95

seq1  TGTCTGGCTTCTTCTCCCCAGGTGCAAACCCAGAAATTAGCGTGTACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGCTTCTTCTCCCCAGGTGCAAACCCAGAAATTAGCGTGTACTAA  145

seq1  ATACATATTGCATGGTGTGGAGATGCCTATACCTATGCTGATGTTGTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATTGCATGGTGTGGAGATGCCTATACCTATGCTGATGTTGTAGC  195

seq1  AATGATTAAAATACCCAGACAGGGGTAAGCTTTGTTAAACACTACAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTAAAATACCCAGACAGGGGTAAGCTTTGTTAAACACTACAGTCT  245

seq1  GGACTAAGTACATGAGAAATTTCTTCTAGCCCGAGTATCCAGCAAAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAAGTACATGAGAAATTTCTTCTAGCCCGAGTATCCAGCAAAACTT  295

seq1  AGGTCTTTATAAAAATAATAAATGTGTCTTTATGAAAATAATAGAATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTTATAAAAATAATAAATGTGTCTTTATGAAAATAATAGAATGTG  345

seq1  TTAATTCTATTTATGATGAGATTCACACAATGAAATGAAACTATATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTATTTATGATGAGATTCACACAATGAAATGAAACTATATTTAT  395

seq1  ATTTAAATTAAGTATATAGAACACATATCTGTTATACATTCACTGAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATTAAGTATATAGAACACATATCTGTTATACATTCACTGAGCCA  445

seq1  CAAACGATTCAGTTCCTTCTGAACTAGGAAACTGGAAACAGTGCTCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGATTCAGTTCCTTCTGAACTAGGAAACTGGAAACAGTGCTCATCT  495

seq1  TAGTTCTATAATTTTTTTACCTTTAAAATTTCCTTAAAAATGCCAATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTATAATTTTTTTACCTTTAAAATTTCCTTAAAAATGCCAATTCT  545

seq1  TCTGGAAACCCAAAGAAGGATTCCATCTCTGAGATTCTTCTGATGTTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAACCCAAAGAAGGATTCCATCTCTGAGATTCTTCTGATGTTCAC  595

seq1  TTTAGTGGGTCTCAAAACTTAACTTTCAGTACTTAGTTCATTTGAATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGGGTCTCAAAACTTAACTTTCAGTACTTAGTTCATTTGAATTTA  645

seq1  AACAATAGTGGGTATTATTATTACTTTGGTGTGAAGTTTGCCAAGATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGTGGGTATTATTATTACTTTGGTGTGAAGTTTGCCAAGATGAT  695

seq1  ACGTTCTCTGAAGGCACACTTCCCTTCGCTGCTCAATTTTAGCTAAGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTCTCTGAAGGCACACTTCCCTTCGCTGCTCAATTTTAGCTAAGGTA  745

seq1  TCCCTCATGGCTTGCTTAGTGTCTGGCATATACTGGCCGAACTGATGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCATGGCTTGCTTAGTGTCTGGCATATACTGGCCGAACTGATGGAT  795

seq1  GAATGAGTAAATAGAATAAAGAAATGGCCTCATGGAAGAAAGTCCTGCGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGTAAATAGAATAAAGAAATGGCCTCATGGAAGAAAGTCCTGCGT  845

seq1  GATAGTCTGGACCACAGTCCCCTGGTTATCCCTCATCTGAGCTTCACGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCTGGACCACAGTCCCCTGGTTATCCCTCATCTGAGCTTCACGGA  895

seq1  CCTTTCCCATCTCATTCTGTGCTAGTATTTGCAGAAATTCCATTTTTCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCATCTCATTCTGTGCTAGTATTTGCAGAAATTCCATTTTTCAA  945

seq1  AATGCCCCTATTTCCTGCAGAAGTCTTTGCTTTGAATTC  989
      |||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCCTATTTCCTGCAGAAGTCTTTGCTTTGAATTC  984