BAC Information

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BAC

Clone NameB6Ng01-170P20
Chromosome3 (Build37)8 (Build37)
Map Location 41,059,191 - 41,059,737103,405,038 - 103,406,174
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170P20.bB6Ng01-170P20.g
ACCDH961567DH961568
length9621,108
definitionDH961567|Mus musculus domesticus DNA, BAC clone: B6Ng01-170P20, 5' end.DH961568|Mus musculus domesticus DNA, BAC clone: B6Ng01-170P20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,191 - 41,059,737)(103,405,038 - 103,406,174)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
tctggaatccaccttcttgatttttttatatatattggatgttagtcccc
tatctgatttaggtaggtaaagatcctttcccagtctgttggtggctttt
tgtcttattgacaatgtcttttgcctgacagaaactttgcaattttatgg
ggtcccatttgtcaattctcaatcttagagcagaagccattgctgttcta
tttgggaatatttcccctgtgcccatatcttcgaggcttttccccacttt
ctcctctataagtttcagtgtctctggttttatgtggagttccttgatcc
acttagatttgaccttagtgaaaggagataggaatggatcagttcacatt
cttctacatgataaccaccagttgtgccagcaccatttgttgaaaatgtt
gtcttttttccactggatggttttagctcccttgtcaaagatcacgtgac
cataggtgtgtgggttcatttctgggtcttcaattctattccattgttct
acttgtctatcactataccagtaccatgcagtttttatcacaattgctct
gtagcacagctttaggttaggcatggtgattcccccagaggttctttcat
atttgagaagagtttttgctatcctaggtttttgttattccagatgaatt
tgcagattgttctttctaatttgttgaagaattgagttagaattttgatt
gggattgctttgaatctgtagatagcttttggcaagatagtcatttttta
ctatatcaatcctgccaatccatgagcatgggagatttttccatcttctg
agatcttctttaatttctttcttcagagacttgaagttcttatgcagatc
attcacttccttagttagagccacgccgaggtattttatattatttgtga
ctattgagaagg
gaattcatgaataagtgaagtatgtagattttaaccaataaaattccata
tgatgaataaatatgtaaccagtagtaattacgatctgatatggcaataa
ctaattcattcattaattcaatcaataaatgtcctacacatacattatta
tctgtgatataagtacaataaaagtattttcagctcatttagtctcttag
agacatatactttccaataatggtgatgatgatcttggaaatcacagtac
caaaaattttccaagtaaaagtaccaagagataaaggtaattaggtgaat
tgtaaatatttttatttaaaaatatattattcatagaactgaggtaaagc
acatttataaatctatacacaagttgttccaagaagatgatcaatgttcg
tagaatgtattaatggctgttgcttttcctttggtatattacacactttg
ttcgttcgtggtcatgcaccctattttctgatgagatgaactcttacctc
tataactgtatggagaaggggttcttttggcaaatttctgctatcttctg
agatttttactttgaagttgtttgtgtttttctgactttgacagtttgga
tatgaatatttcaagtgtacatgtattaaggcatttggtattttttttat
agttccagagcattttcttcttatttattttttctgtcttgttttttttt
tcctctttgcaagtaaatatataaaatctctattggcataccttcaaatt
tgtggattctttcctcagctgtgcagttttgtaccaaaactttcctgtgt
tttctagttttcagccctgaactcataaacacatcttgtagcatgttttc
tggctctattaacatgtttttataaccaggttttgatgtttactttgtct
cttgagtttttttttctttgtatattcttcttgtttggattaatcttttc
ttagcaagcatgatgtatcagtacgtgacaagatgcaggctttgcattct
tagtcagtcttgctgtagctgatttgtagcaaccttgctataatatgctg
aactattaattacattatgtcatggcttatcatactctgagctgaggcct
acactttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059191_41059737
seq2: B6Ng01-170P20.b_48_592 (reverse)

seq1  CAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCA  50
      ||||||||||||||||||||| |||||| ||| |||||||||||||||||
seq2  CAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCA  50

seq1  CTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCA  100
      | ||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  CGTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAACA  100

seq1  TTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATG  150
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTCAACAAATGGTGCTGGCACAACTGGTGGTTATCATGTAGAAGAATG  150

seq1  CGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGAT  200
       ||| ||||||| ||||||||||||  |||||||||||||||||||||||
seq2  TGAACTGATCCATTCCTATCTCCTTTCACTAAGGTCAAATCTAAGTGGAT  200

seq1  CAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAG  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAG  250

seq1  TGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGA  300
      ||||||||||||| |||||||||| ||||||||||| |||||   |||||
seq2  TGGGGAAAAGCCTCGAAGATATGGGCACAGGGGAAATATTCCCAAATAGA  300

seq1  ACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCAT  350
      ||||||||||||| |||| ||||||||||||| ||||||||||||| |||
seq2  ACAGCAATGGCTTCTGCTCTAAGATTGAGAATTGACAAATGGGACCCCAT  350

seq1  GAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAA  400
       ||| ||||||| |||||  ||||||||||||  ||||||||||||||||
seq2  AAAATTGCAAAGTTTCTGTCAGGCAAAAGACATTGTCAATAAGACAAAAA  400

seq1  GGCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  450
      | |||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  GCCACCAACAGACTGGGAAAGGATCTTTACCTA-CCTAAATCAGATAGGG  449

seq1  GACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAA  500
      |||||| ||||||||||||| || || ||||||||||||||||||| |||
seq2  GACTAACATCCAATATATATAAAAAAATCAAGAAGGTGGATTCCAG-AAA  498

seq1  TCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  547
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  545

seq1: chr8_103405038_103406174
seq2: B6Ng01-170P20.g_68_1175 (reverse)

seq1  AAAAGTTGTTAAGGCCTCAGCTCTAGGAAGTAATGGATAAAGCCAATGAC  50
      ||||| |||  |||||||||||| ||  ||||   ||| ||||| |||||
seq2  AAAAG-TGT--AGGCCTCAGCTC-AG--AGTA--TGAT-AAGCC-ATGAC  40

seq1  ATAAATGTAATTTAAATAGTTCAAGCCAATATTTATAGCAAGGGTTTTGC  100
      || |||||||||  |||||||| |||  ||| |||||||||||   ||||
seq2  AT-AATGTAATT--AATAGTTC-AGC--ATA-TTATAGCAAGG---TTGC  80

seq1  TACAAATCAGCTACAGCCAGACTGACCTAAGAATGCAAAGCCCTGCATCT  150
      ||||||||||||||||| ||||||| |||||||||||||| |||||||||
seq2  TACAAATCAGCTACAGCAAGACTGA-CTAAGAATGCAAAG-CCTGCATCT  128

seq1  TTGTTCACGTTACCTGATACATCATGCTTGCTTAAGAAAAGATTAATCCA  200
      |   ||||||   |||||||||||||||||| ||||||||||||||||| 
seq2  T--GTCACGT--ACTGATACATCATGCTTGC-TAAGAAAAGATTAATCC-  172

seq1  AAACAAGAAGAATATACAAAGAAAAAAAAACTCAAGAGACAAAGTAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAAGAATATACAAAGAAAAAAAAACTCAAGAGACAAAGTAAACA  222

seq1  TCAAAACCTGGTTTATAAAAACATGTTAATAGAGCCAGAAAACATGCTAC  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACCTGG-TTATAAAAACATGTTAATAGAGCCAGAAAACATGCTAC  271

seq1  AAGATGTGTTTATGAGTTCAGGGCTGAAAACTAGAAAACACAGGAAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTGTTTATGAGTTCAGGGCTGAAAACTAGAAAACACAGGAAAGTT  321

seq1  TTGGTACAAAACTGCACAGCTGAGGAAAGAATCCACAAATTTGAAGGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACAAAACTGCACAGCTGAGGAAAGAATCCACAAATTTGAAGGTAT  371

seq1  GCCAATAGAGATTTTATATATTTACTTGCAAAGAGGAAAAAAAAAACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATAGAGATTTTATATATTTACTTGCAAAGAGGAAAAAAAAAACAAG  421

seq1  ACAGAAAAAATAAATAAGAAGAAAATGCTCTGGAACTATAAAAAAAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAAATAAATAAGAAGAAAATGCTCTGGAACTATAAAAAAAATAC  471

seq1  CAAATGCCTTAATACATGTACACTTGAAATATTCATATCCAAACTGTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCCTTAATACATGTACACTTGAAATATTCATATCCAAACTGTCAA  521

seq1  AGTCAGAAAAACACAAACAACTTCAAAGTAAAAATCTCAGAAGATAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAAAAACACAAACAACTTCAAAGTAAAAATCTCAGAAGATAGCAG  571

seq1  AAATTTGCCAAAAGAACCCCTTCTCCATACAGTTATAGAGGTAAGAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGCCAAAAGAACCCCTTCTCCATACAGTTATAGAGGTAAGAGTTC  621

seq1  ATCTCATCAGAAAATAGGGTGCATGACCACGAACGAACAAAGTGTGTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATCAGAAAATAGGGTGCATGACCACGAACGAACAAAGTGTGTAAT  671

seq1  ATACCAAAGGAAAAGCAACAGCCATTAATACATTCTACGAACATTGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAAGGAAAAGCAACAGCCATTAATACATTCTACGAACATTGATCA  721

seq1  TCTTCTTGGAACAACTTGTGTATAGATTTATAAATGTGCTTTACCTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGGAACAACTTGTGTATAGATTTATAAATGTGCTTTACCTCAGT  771

seq1  TCTATGAATAATATATTTTTAAATAAAAATATTTACAATTCACCTAATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAATAATATATTTTTAAATAAAAATATTTACAATTCACCTAATTA  821

seq1  CCTTTATCTCTTGGTACTTTTACTTGGAAAATTTTTGGTACTGTGATTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATCTCTTGGTACTTTTACTTGGAAAATTTTTGGTACTGTGATTTC  871

seq1  CAAGATCATCATCACCATTATTGGAAAGTATATGTCTCTAAGAGACTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCATCATCACCATTATTGGAAAGTATATGTCTCTAAGAGACTAAA  921

seq1  TGAGCTGAAAATACTTTTATTGTACTTATATCACAGATAATAATGTATGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGAAAATACTTTTATTGTACTTATATCACAGATAATAATGTATGT  971

seq1  GTAGGACATTTATTGATTGAATTAATGAATGAATTAGTTATTGCCATATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGACATTTATTGATTGAATTAATGAATGAATTAGTTATTGCCATATC  1021

seq1  AGATCGTAATTACTACTGGTTACATATTTATTCATCATATGGAATTTTAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGTAATTACTACTGGTTACATATTTATTCATCATATGGAATTTTAT  1071

seq1  TGGTTAAAATCTACATACTTCACTTATTCATGAATTC  1137
      |||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAAATCTACATACTTCACTTATTCATGAATTC  1108