BAC Information

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BAC

Clone NameB6Ng01-171E03
Chromosome3 (Build37)
Map Location 134,034,259 - 134,035,252
singlet/doubletsinglet
Overlap genenone
Upstream genePpa2, E130014J05Rik, EG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1
Downstream geneLOC100039234, Tacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171E03.bB6Ng01-171E03.g
ACCGA000191GA000192
length1,075988
definitionB6Ng01-171E03.b B6Ng01-171E03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgtttcattctataccccattttttgattcagttgtttggtt
tcttggtggttaccttcttgtgttttttaaaatatatattttggttataa
gccctctattggatggagggttagtaaagattttttcccaatctgtaggt
tgctggtctgtcctactgatgatgtgttttgcctcacagaagctttccag
tttcaagaggttttatttatcaactcttgatcttagagcctgagccattg
gaggtctatttaggaaatttccccctgtgccaatgagtttgaggcttttt
ctacttccacttctattagattcagtgtatctggttttatagtgaggtcc
ttgatccacttggacatgagctttgttcaaggtggcaaatatgtatctat
tttcattttactatatacagactgacaattagaccagcaccgtttattga
agatgctttcttttttccatcgtatatttttggctcctttttcaaagttt
aagtgtctgtaagtgtgtggttttatttctgggttttcaattctattcca
tcctgggttttcagttctattctgttgatcaacttgtctgtttctgtacc
aaagccttgcatatgggcatgcaaccttttgggaaccaaaatgaattgcg
acagcattagaaccactcacttaacagtatactgcaggcactaagactgg
cagttaataaatggactctcctgaaactgaaaacatctctatggcaaagg
acactcttactcagacaaagcagcagcctacatacgcaatgagtaaaggt
cttttgatcaactatacatatgatagagggctaatatataaaaaataaaa
ataacccaaaaaactagatagcagaaaacaaatggcccattttaaagatg
ggatgcagatcttacagaagattatcaaagaggaaactcagatgattgag
aattttcaaatgttcagcatcctttgtcatcaggaatgcaaatcaaacct
acttgaacccattttttaagatgagatttggcttaagctctgataactga
atgggtgagttccactgcctggcat
gaattcacccttgagaatttaaaagtgagctattgcaggaagagatgcat
ggacaggagtcctgaggcaatggctggtttcaagctgtggcagattatat
tactggcattaatcaggcatgtgtattatgatgccttgcacactgcttaa
ggccacgaagctttatttagaaaatgtagatttgcatttagttgctagat
ttatttatttattattcatttcaaatacttctaactacaaggataggatc
tcttatagtagaactgatattactttttagtgtgtacattttagtaatga
atatatatattcatatatgtatatacatcttagtggtggatatacatcta
caaacacagacagtgaaagagctgacatttgaacatagagcagcctgaat
ctaaaatcaatactataatatcacatggattctgacttcaataattatat
aaattgttaatcaattacttatacacatacatatatgaagtttttttcct
tcaatctttttatattttttattttttacactccatattttattctgccc
catccaccctccaactctgccacataacatacctcctccccacatcccct
gtctccacatggatgtccccacccccaacccacaagacctctaaattccc
tgggacctccagggtcttttcttgagggttaggtgcatcatctctgaatg
aacacagaaacagcagtcctctactgtacgtgtgttggggacctcatatc
agctggtgtatgctgtctgtttggtggtctagtgtttgagagatctaggg
ggtccagattaattgagactgctggtcttcctacaggattgcccttctcc
tcagcttctttcagctttccctaattcaataacagagtcagctgcttctg
tccattggttgggtgtaaatatttgcacctgactttcagctgctgttggg
tctttcagagggagtcacaatagtccttttgtgagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_134034259_134035252
seq2: B6Ng01-171E03.g_66_1053

seq1  GAATTCACCCTTGAGAATTTAAAAGTGAGCTATTGCAGGAAGAGATGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTTGAGAATTTAAAAGTGAGCTATTGCAGGAAGAGATGCAT  50

seq1  GGACAGGAGTCCTGAGGCAATGGCTGGTTTCAAGCTGTGGCAGATTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGAGTCCTGAGGCAATGGCTGGTTTCAAGCTGTGGCAGATTATAT  100

seq1  TACTGGCATTAATCAGGCATGTGTATTATGATGCCTTGCACACTGCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCATTAATCAGGCATGTGTATTATGATGCCTTGCACACTGCTTAA  150

seq1  GGCCACGAAGCTTTATTTAGAAAATGTAGATTTGCATTTAGTTGCTAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACGAAGCTTTATTTAGAAAATGTAGATTTGCATTTAGTTGCTAGAT  200

seq1  TTATTTATTTATTATTCATTTCAAATACTTCTAACTACAAGGATAGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTATTATTCATTTCAAATACTTCTAACTACAAGGATAGGATC  250

seq1  TCTTATAGTAGAACTGATATTACTTTTTAGTGTGTACATTTTAGTAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAGTAGAACTGATATTACTTTTTAGTGTGTACATTTTAGTAATGA  300

seq1  ATATATATATTCATATATGTATATACATCTTAGTGGTGGATATACATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATTCATATATGTATATACATCTTAGTGGTGGATATACATCTA  350

seq1  CAAACACAGACAGTGAAAGAGCTGACATTTGAACATAGAGCAGCCTGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACAGACAGTGAAAGAGCTGACATTTGAACATAGAGCAGCCTGAAT  400

seq1  CTAAAATCAATACTATAATATCACATGGATTCTGACTTCAATAATTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATCAATACTATAATATCACATGGATTCTGACTTCAATAATTATAT  450

seq1  AAATTGTTAATCAATTACTTATACACATACATATATGAAGTTTTTTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTAATCAATTACTTATACACATACATATATGAAGTTTTTTTCCT  500

seq1  TCAATCTTTTTATATTTTTTATTTTTTACACTCCATATTTTATTCTGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTTTTTATATTTTTTATTTTTTACACTCCATATTTTATTCTGCCC  550

seq1  CATCCACCCTCCAACTCTGCCACATAACATACCTCCTCCCCACATCCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACCCTCCAACTCTGCCACATAACATACCTCCTCCCCACATCCCCT  600

seq1  GTCTCCACATGGATGTCCCCACCCCCAACCCACAAGACCTCTAAATTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCACATGGATGTCCCCACCCCCAACCCACAAGACCTCTAAATTCCC  650

seq1  TGGGACCTCCAGGGTCTTTTCTTGAGGGTTAGGTGCATCATCTCTGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCTCCAGGGTCTTTTCTTGAGGGTTAGGTGCATCATCTCTGAATG  700

seq1  AACACAGAAACAGCAGTCCTCTACTGTACGTGTGTTGGGGACCTCATATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGAAACAGCAGTCCTCTACTGTACGTGTGTTGGGGACCTCATATC  750

seq1  AGCTGGTGTATGCTGTCTGTTTGGTGGTCTAGTGTTTGAGAGATCTAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTGTATGCTGTCTGTTTGGTGGTCTAGTGTTTGAGAGATCTAGGG  800

seq1  GGTCCAGATTAATTGAGACTGCTGGTCTTCCTACAGGATTGCCCTTCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGATTAATTGAGACTGCTGGTCTTCCTACAGGATTGCCCTTCTCC  850

seq1  TCAGCTTCTTTCAGCTTTCCCTAATTCAATAACAGGAGTCAGCTGCTTCT  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCAGCTTCTTTCAGCTTTCCCTAATTCAATAACA-GAGTCAGCTGCTTCT  899

seq1  GTCCATTGGTTGGGTGTAAATATTTGCACCTGACTTTCAGCTGCTTGTTG  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTCCATTGGTTGGGTGTAAATATTTGCACCTGACTTTCAGCTGC-TGTTG  948

seq1  GGTCTTTCAGAGGGAAGTCACAATAGGTCCCTTTTTGTGAGTGT  994
      |||||||||||||| |||||||||| ||||  ||||||||||||
seq2  GGTCTTTCAGAGGG-AGTCACAATA-GTCC--TTTTGTGAGTGT  988