BAC Information

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BAC

Clone NameB6Ng01-171P16
Chromosome3 (Build37)
Map Location 120,156,370 - 120,340,081
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043275, LOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171P16.bB6Ng01-171P16.g
ACCGA000719GA000720
length9841,046
definitionB6Ng01-171P16.b B6Ng01-171P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,339,098 - 120,340,081)(120,156,370 - 120,157,403)
sequence
gaattctccctgggatcttagacaatgtaatactagcagccaccctcaga
tcagccacaccccggctgcagcttcacagagcctgcctcctccttccctc
cacgaacccttcacaccggcttccttcatttttgtttcaaaaaggcagaa
atgaagccaaaatcttttgtgtaaagaaaaaaaatcactataaagaggaa
ggcgaatcatacgcagttatttttgaaaaagattttgctttaaaattaga
aactccctcctaaccaggaacacttcaaaacatttactctgcatctcaaa
ggcctggctgtggctgctgtgctgggagcactgatgggaccctgatgttt
taggggatgaataacaggataatttcttgcattgtttaatctttttctct
tgtgcttgatttttgcagtttgttcgaataaatgtctacctaattatact
gtcacgaagagcatcagacttcaaaaaatatcccgaattaactagtacag
aaaactctccttgttcctcaggtgattgatatgagactatgagataaaat
tattttttctggtccagtgatgttcagtacaatccaaatgatgtatttat
ccacatcctatgcctgagatccctgaatactgtcttttagggaacaggat
ggggctaatttaacttcctggagaaaaagaccttctactggattttctgg
gtgaatcttaaatgtcttcatatatgttataggaggaaagatacagaggg
atttaggaagaaaagacaatgtgatcatgaaggcagagattggagaaatg
gagctacaagcgatatatgtgtaacgtgcacaccttgatgcctgagagct
cagaaaagggagtgatatctcctgaaacagtagtagggatggttgtaaag
ctaccattgttgcttgctatggactgaacctgggtcttaagagcaacaga
tgttctaatcactgagccaactctcagtcccctt
gaattcatatcaagtgactccttttgtgattggattattcttaaccagtt
ttttttttttttttttttttggtcacctactaagtattcttgaaatacca
agaaagctaacacataaaaacaaatgagacccagggacatatttagtctt
cttcaaagcctcaccacctcctacttcgtgtgttgtccatataccctaga
ggaattttttttccttactagattaaaatgtctcaggaaaataaaatgca
tattatagataataatgtataattatatattaacatatcaatatatactt
ataagttatatatgtatatgtatatatgtatacacatatacagcatgtga
cacatagctgagaaccaggaaaatgagagaggaggagaaagaggaagtaa
ggaaaatggaccagcaatgtttaccaaagatttgtgatcttcacttcaca
taatatacagaactaattaaaatattgggattatagaatgtgtaaaacaa
taaaacagtgaaaagaaaatggtagaaaatagatgaaaaattgaaaatgt
gatgcactccttgtcaataatatttagaagtattgggactggagcgatgg
ctcagtggttaagagcactgactgctcttccacaggttctgagttcaatt
ctcaacaaccacatggtggctcacatccatctgtaatgggatcgaatgcc
ctcttctggtgtgtctgaagacagctacagtgtactcatataaataaaat
aaaataaatctttagtattataaaaaatgagtccatcacaacccaagctg
cttaagaataataaaagtgatacacatgagtgaaaatgttcataccacat
agctgtaaaaatgggaccagcacccaaacatattagtgaacttgttacaa
ttctataatttgaaagaaaataacatgatgacaattggacagacatctgg
accaggataaattcaccaggaaaagaatgaaaggagccaatatcataaac
tgttcagtattcagcctgtcataggtaacattatgaaaaccgtatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_120339098_120340081
seq2: B6Ng01-171P16.b_33_1016 (reverse)

seq1  AAGGGGACTGGAGAGTTGGCTCAGTGGTTAGAACATCTGTTGCTCTTAAA  50
      ||||||||| |||||||||||||||| |||||||||||||||||||| ||
seq2  AAGGGGACT-GAGAGTTGGCTCAGTGATTAGAACATCTGTTGCTCTT-AA  48

seq1  GACCCAGGTTCAGTCCATAGC-AGCCAC-ATGGTAGC-TTACAACCATCC  97
      ||||||||||||||||||||| ||| || |||||||| ||||||||||||
seq2  GACCCAGGTTCAGTCCATAGCAAGCAACAATGGTAGCTTTACAACCATCC  98

seq1  CTTACTACTGTTTCAGGAGATATCACTCCCTTTTCTGAGCTCCTCAGGCA  147
      | ||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  C-TACTACTGTTTCAGGAGATATCACTCCCTTTTCTGAGCT-CTCAGGCA  146

seq1  TC-AGGTGTGCACGTTACACATATATCGCTTGTAGCTCCATTTCTCCAAT  196
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTGTGCACGTTACACATATATCGCTTGTAGCTCCATTTCTCCAAT  196

seq1  CTCTGCCTTCATGATCACATTGTCTTTTCTTCCTAAATCCCTCTGTATCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTTCATGATCACATTGTCTTTTCTTCCTAAATCCCTCTGTATCT  246

seq1  TTCCTCCTATAACATATATGAAGACATTTAAGATTCACCCAGAAAATCCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTATAACATATATGAAGACATTTAAGATTCACCCAGAAAATCCA  296

seq1  GTAGAAGGTCTTTTTCTCCAGGAAGTTAAATTAGCCCCATCCTGTTCCCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGGTCTTTTTCTCCAGGAAGTTAAATTAGCCCCATCCTGTTCCCT  346

seq1  AAAAGACAGTATTCAGGGATCTCAGGCATAGGATGTGGATAAATACATCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAGTATTCAGGGATCTCAGGCATAGGATGTGGATAAATACATCA  396

seq1  TTTGGATTGTACTGAACATCACTGGACCAGAAAAAATAATTTTATCTCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATTGTACTGAACATCACTGGACCAGAAAAAATAATTTTATCTCAT  446

seq1  AGTCTCATATCAATCACCTGAGGAACAAGGAGAGTTTTCTGTACTAGTTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCATATCAATCACCTGAGGAACAAGGAGAGTTTTCTGTACTAGTTA  496

seq1  ATTCGGGATATTTTTTGAAGTCTGATGCTCTTCGTGACAGTATAATTAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGGATATTTTTTGAAGTCTGATGCTCTTCGTGACAGTATAATTAGG  546

seq1  TAGACATTTATTCGAACAAACTGCAAAAATCAAGCACAAGAGAAAAAGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATTTATTCGAACAAACTGCAAAAATCAAGCACAAGAGAAAAAGAT  596

seq1  TAAACAATGCAAGAAATTATCCTGTTATTCATCCCCTAAAACATCAGGGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATGCAAGAAATTATCCTGTTATTCATCCCCTAAAACATCAGGGT  646

seq1  CCCATCAGTGCTCCCAGCACAGCAGCCACAGCCAGGCCTTTGAGATGCAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCAGTGCTCCCAGCACAGCAGCCACAGCCAGGCCTTTGAGATGCAG  696

seq1  AGTAAATGTTTTGAAGTGTTCCTGGTTAGGAGGGAGTTTCTAATTTTAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATGTTTTGAAGTGTTCCTGGTTAGGAGGGAGTTTCTAATTTTAAA  746

seq1  GCAAAATCTTTTTCAAAAATAACTGCGTATGATTCGCCTTCCTCTTTATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATCTTTTTCAAAAATAACTGCGTATGATTCGCCTTCCTCTTTATA  796

seq1  GTGATTTTTTTTCTTTACACAAAAGATTTTGGCTTCATTTCTGCCTTTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTTTTTTCTTTACACAAAAGATTTTGGCTTCATTTCTGCCTTTTT  846

seq1  GAAACAAAAATGAAGGAAGCCGGTGTGAAGGGTTCGTGGAGGGAAGGAGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAAAATGAAGGAAGCCGGTGTGAAGGGTTCGTGGAGGGAAGGAGG  896

seq1  AGGCAGGCTCTGTGAAGCTGCAGCCGGGGTGTGGCTGATCTGAGGGTGGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCTCTGTGAAGCTGCAGCCGGGGTGTGGCTGATCTGAGGGTGGC  946

seq1  TGCTAGTATTACATTGTCTAAGATCCCAGGGAGAATTC  984
      ||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTATTACATTGTCTAAGATCCCAGGGAGAATTC  984

seq1: chr3_120156370_120157403
seq2: B6Ng01-171P16.g_66_1111

seq1  GAATTCATATCAAGTGACTCCTTTTGTGATTGGATTATTCTTAACCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCAAGTGACTCCTTTTGTGATTGGATTATTCTTAACCAGTT  50

seq1  TTTTTTTTTTTTTTTTTTTTGGTCACCTACTAAGTATTCTTGAAATACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTGGTCACCTACTAAGTATTCTTGAAATACCA  100

seq1  AGAAAGCTAACACATAAAAACAAATGAGACCCAGGGACATATTTAGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTAACACATAAAAACAAATGAGACCCAGGGACATATTTAGTCTT  150

seq1  CTTCAAAGCCTCACCACCTCCTACTTCGTGTGTTGTCCATATACCCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGCCTCACCACCTCCTACTTCGTGTGTTGTCCATATACCCTAGA  200

seq1  GGAATTTTTTTTCCTTACTAGATTAAAATGTCTCAGGAAAATAAAATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTTTTTTCCTTACTAGATTAAAATGTCTCAGGAAAATAAAATGCA  250

seq1  TATTATAGATAATAATGTATAATTATATATTAACATATCAATATATACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAGATAATAATGTATAATTATATATTAACATATCAATATATACTT  300

seq1  ATAAGTTATATATGTATATGTATATATGTATACACATATACAGCATGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTATATATGTATATGTATATATGTATACACATATACAGCATGTGA  350

seq1  CACATAGCTGAGAACCAGGAAAATGAGAGAGGAGGAGAAAGAGGAAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGCTGAGAACCAGGAAAATGAGAGAGGAGGAGAAAGAGGAAGTAA  400

seq1  GGAAAATGGACCAGCAATGTTTACCAAAGATTTGTGATCTTCACTTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGGACCAGCAATGTTTACCAAAGATTTGTGATCTTCACTTCACA  450

seq1  TAATATACAGAACTAATTAAAATATTGGGATTATAGAATGTGTAAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACAGAACTAATTAAAATATTGGGATTATAGAATGTGTAAAACAA  500

seq1  TAAAACAGTGAAAAGAAAATGGTAGAAAATAGATGAAAAATTGAAAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGTGAAAAGAAAATGGTAGAAAATAGATGAAAAATTGAAAATGT  550

seq1  GATGCACTCCTTGTCAATAATATTTAGAAGTATTGGGACTGGAGCGATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACTCCTTGTCAATAATATTTAGAAGTATTGGGACTGGAGCGATGG  600

seq1  CTCAGTGGTTAAGAGCACTGACTGCTCTTCCACAGGTTCTGAGTTCAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGTTAAGAGCACTGACTGCTCTTCCACAGGTTCTGAGTTCAATT  650

seq1  CTCAACAACCACATGGTGGCTCACATCCATCTGTAATGGGATCGAATGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAACCACATGGTGGCTCACATCCATCTGTAATGGGATCGAATGCC  700

seq1  CTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCATATAAATAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCATATAAATAAAAT  750

seq1  -AAATAAATCTTTAGTATTATAAAAAATGAGTCCATCACAA-CCAAGCTG  798
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAATAAATCTTTAGTATTATAAAAAATGAGTCCATCACAACCCAAGCTG  800

seq1  CTTAAG-ATAATAAAAGTGATACACATGAGTGAAAATGTTCATACCACAT  847
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAATAATAAAAGTGATACACATGAGTGAAAATGTTCATACCACAT  850

seq1  AGCTGTAAAAAT-GGACCAGCACCCAAACATA-TAGTGAAC-TGTTACAA  894
      |||||||||||| ||||||||||||||||||| |||||||| ||||||||
seq2  AGCTGTAAAAATGGGACCAGCACCCAAACATATTAGTGAACTTGTTACAA  900

seq1  TTCTATAATTTGAAAG-AAATAACATGATGACAATTGGACAGACATCTGA  943
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  TTCTATAATTTGAAAGAAAATAACATGATGACAATTGGACAGACATCTGG  950

seq1  AC--AGATAAA-TCAC--AGAAAAGATGAAAAGGAGCCAATATCATAAAC  988
      ||   |||||| ||||   |||||||   |||||||||||||||||||||
seq2  ACCAGGATAAATTCACCAGGAAAAGAATGAAAGGAGCCAATATCATAAAC  1000

seq1  TGTTCAGTA-TCAG-CTGTCATAGGTTAACATAAATGAAAACCGTATC  1034
      ||||||||| |||| |||||||||| ||||||  ||||||||||||||
seq2  TGTTCAGTATTCAGCCTGTCATAGG-TAACAT-TATGAAAACCGTATC  1046