BAC Information

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BAC

Clone NameB6Ng01-172B24
Chromosome3 (Build37)
Map Location 41,348,114 - 41,489,286
singlet/doubletdoublet
Overlap genePhf17, Sclt1
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115
Downstream geneD3Ertd751e, LOC666031, LOC100039204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172B24.bB6Ng01-172B24.g
ACCGA000826GA000827
length1,111223
definitionB6Ng01-172B24.b B6Ng01-172B24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,348,114 - 41,349,242)(41,489,058 - 41,489,286)
sequence
gaattccttagttttaaagcctaaatgaaggttctcattttatccaggaa
aatacaaggcacctgctgaagcttcttgactccgcactttcttagacaca
gacattcaaaaagcatcaacccttgcttctcatggtgcaaaaaaagcaat
tccgatttactggtgcaatgaacagttggtattataatatgtggctggat
aaatacacaccctcctgctgcttcttatcctccaggctttagctgttagt
cccaaagcttggacggcagaatcctcacttgagccgggcctttttgtaac
atttttggtatccttggccttggatggcaactaagtctcttaaatcaaaa
agggccttgtttgtttcactggaatctgcccaccttagcgatctggaagt
taactaaccagcctgcttccgctcatccctgcccccagagggcttccctc
tgctggctccctgccagcctttactttcaagttgaaaatagttctttttc
tctgtttttctagaacatagaattcattacccctggatcctggccaacag
cgtccctctcatgtattttaagctaagatgaatgttgcagtgcgacctgg
taggcttgccccacaatgggatgttggacatgaacgtactggatatctac
aggagtgctttgctctacctaggggggccggccggcaggaatgagattct
gggaaaccaggagggcattctgggtggactcaccagggctgactggagaa
atcccattaagtaaaatttagctgagcttgctattgccctcagaaaatcc
ctggtggtttctaccacagaaagcgtccctttggtcatcggtgtagagag
cagactccagcgatagagaaagagctctgtatttcccctcgttttcagct
cctcatgcacttctgttgccccactttaacgcagcctatggtatatgacc
ctttcacttgcctggctctgtgactgacatggatatatccttacctctaa
gctatttcctaggatatctatgtctttgtatttagccaaacttctagttt
gacgactgtagcttcacatgcaggttgacaggagagcctgtgttacctca
tctagttcccc
tcctgtctcagacattattgctgataactatttttcctcttccatcctct
gaaattgccttgaagaatctgtttattttacttactgtagaattacctct
tttgaatagtttgtatttgttcttgagtttcttctctggcatttggggct
atttctcaggttctgttgtcatatgtatacatatatatgtgtgtgtgtgt
gtgtgtgtgtatatatatgtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41348114_41349242
seq2: B6Ng01-172B24.b_45_1155

seq1  GAATTCCTTAGTTTTAAAGCCTAAATGAAGGTTCTCATTTTATCCAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGTTTTAAAGCCTAAATGAAGGTTCTCATTTTATCCAGGAA  50

seq1  AATACAAGGCACCTGCTGAAGCTTCTTGACTCCGCACTTTCTTAGACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAGGCACCTGCTGAAGCTTCTTGACTCCGCACTTTCTTAGACACA  100

seq1  GACATTCAAAAAGCATCAACCCTTGCTTCTCATGGTGCAAAAAAAGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCAAAAAGCATCAACCCTTGCTTCTCATGGTGCAAAAAAAGCAAT  150

seq1  TCCGATTTACTGGTGCAATGAACAGTTGGTATTATAATATGTGGCTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATTTACTGGTGCAATGAACAGTTGGTATTATAATATGTGGCTGGAT  200

seq1  AAATACACACCCTCCTGCTGCTTCTTATCCTCCAGGCTTTAGCTGTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACACACCCTCCTGCTGCTTCTTATCCTCCAGGCTTTAGCTGTTAGT  250

seq1  CCCAAAGCTTGGACGGCAGAATCCTCACTTGAGCCGGGCCTTTTTGTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGCTTGGACGGCAGAATCCTCACTTGAGCCGGGCCTTTTTGTAAC  300

seq1  ATTTTTGGTATCCTTGGCCTTGGATGGCAACTAAGTCTCTTAAATCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGGTATCCTTGGCCTTGGATGGCAACTAAGTCTCTTAAATCAAAA  350

seq1  AGGGCCTTGTTTGTTTCACTGGAATCTGCCCACCTTAGCGATCTGGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTTGTTTGTTTCACTGGAATCTGCCCACCTTAGCGATCTGGAAGT  400

seq1  TAACTAACCAGCCTGCTTCCGCTCATCCCTGCCCCCAGAGGGCTTCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAACCAGCCTGCTTCCGCTCATCCCTGCCCCCAGAGGGCTTCCCTC  450

seq1  TGCTGGCTCCCTGCCAGCCTTTACTTTCAAGTTGAAAATAGTTCTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTCCCTGCCAGCCTTTACTTTCAAGTTGAAAATAGTTCTTTTTC  500

seq1  TCTGTTTTTCTAGAACATAGAATTCATTACCCCTGGATCCTGGCCAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTTCTAGAACATAGAATTCATTACCCCTGGATCCTGGCCAACAG  550

seq1  CGTCCCTCTCATGTATTTTAAGCTAAGATGAATGTTGCAGTGCGACCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCCTCTCATGTATTTTAAGCTAAGATGAATGTTGCAGTGCGACCTGG  600

seq1  TAGGCTTGCCCCACAATGGGATGTTGGACATGAACGTACTGGATATCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTGCCCCACAATGGGATGTTGGACATGAACGTACTGGATATCTAC  650

seq1  AGGAGTGCTTTGCTCTACCTAGGGGGGCCGGCCGGCAGGAATGAGATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGCTTTGCTCTACCTAGGGGGGCCGGCCGGCAGGAATGAGATTCT  700

seq1  GGGAAACCAGGAGGGCATTCTGGGTGGACTCACCAGGGCTGACTGGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACCAGGAGGGCATTCTGGGTGGACTCACCAGGGCTGACTGGAGAA  750

seq1  ATCCCATTAAGTAAAATTTAGCTGAGCTTGCTATTGCCCTCAGAAAATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATTAAGTAAAATTTAGCTGAGCTTGCTATTGCCCTCAGAAAATCC  800

seq1  CTGGTGGTTTCTACCACAGAAAGCGTCCCTTTGGTCATCGGTGTAGAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGTTTCTACCACAGAAAGCGTCCCTTTGGTCATCGGTGTAGAGAG  850

seq1  CAGACTCCAGCGATAGAGAAAGAGCTCTGTATTTCCCCTCGTTTTCAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCCAGCGATAGAGAAAGAGCTCTGTATTTCCCCTCGTTTTCAGCT  900

seq1  CCTCATGCACTTCTGTTTGCCCCACTTTAACGCAGCCTATGGTATTATGA  950
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  CCTCATGCACTTCTG-TTGCCCCACTTTAACGCAGCCTATGGTA-TATGA  948

seq1  ACCCTTCACTTGCCTGGCTCTGTTGACTGACATGGGATTATATTCCTTTA  1000
       || |||||||||||||||||| ||||||||||||    ||||  | |||
seq2  CCCTTTCACTTGCCTGGCTCTG-TGACTGACATGG----ATATATCCTTA  993

seq1  CCTCTTAAGCTATTTCCTAGGAATATCTTAATGTCTTTGTATTTAGCCAA  1050
      |||| |||||||||||||||| ||||||  ||||||||||||||||||||
seq2  CCTC-TAAGCTATTTCCTAGG-ATATCT--ATGTCTTTGTATTTAGCCAA  1039

seq1  ACTTCTAGTTTTGACGGAACTGTAGCTTCACATGCAGTTTGAACAGGGAG  1100
      |||||||| |||||||  ||||||||||||||||||| ||| ||| ||||
seq2  ACTTCTAG-TTTGACG--ACTGTAGCTTCACATGCAGGTTG-ACA-GGAG  1084

seq1  AGCCTGTGTACCCTCCATCTAGTTTCCCC  1129
      |||||||||  ||| ||||||||| ||| 
seq2  AGCCTGTGTTACCT-CATCTAGTTCCCC-  1111

seq1: chr3_41489058_41489286
seq2: B6Ng01-172B24.g_63_291 (reverse)

seq1  TATATATATATATACACACACACACACACACACACATATATATGTATACA  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATATATATACACACACACACACACACACACATATATATGTATACA  50

seq1  TATGACAACAGAACCTGAGAAATAGCCCCAAATGCCAGAGAAGAAACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAACAGAACCTGAGAAATAGCCCCAAATGCCAGAGAAGAAACTCA  100

seq1  AGAACAAATACAAACTATTCAAAAGAGGTAATTCTACAGTAAGTAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAATACAAACTATTCAAAAGAGGTAATTCTACAGTAAGTAAAATA  150

seq1  AACAGATTCTTCAAGGCAATTTCAGAGGATGGAAGAGGAAAAATAGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATTCTTCAAGGCAATTTCAGAGGATGGAAGAGGAAAAATAGTTAT  200

seq1  CAGCAATAATGTCTGAGACAGGAGAATTC  229
      |||||||||||||||||||||||||||||
seq2  CAGCAATAATGTCTGAGACAGGAGAATTC  229