BAC Information

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BAC

Clone NameB6Ng01-172F02
Chromosome3 (Build37)
Map Location 22,107,408 - 22,252,832
singlet/doubletdoublet
Overlap geneTbl1xr1
Upstream geneLOC100040325, 7530428D23Rik, LOC100039465, LOC100040353, LOC545506
Downstream geneLOC675593, LOC100040378, LOC623751
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172F02.bB6Ng01-172F02.g
ACCGA000968GA000969
length1,069378
definitionB6Ng01-172F02.b B6Ng01-172F02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,107,408 - 22,108,469)(22,252,450 - 22,252,832)
sequence
gaattcagctaagagaatgggattgttaacattcccggacacatttttgg
aggacttctgtaacatctttcaagaggaatgtgtatacctttccttcctt
tatcttctttggactatctctggaccagtccctctactctaggcaacatg
ctgtaaacagcgtgaacacaatgtctttcttaatttttacacttcgtctt
ttcaatcatttttttctattggcaaaatgcatatgtcccttggtgacaag
tatgctttatattctgcattcactgttcattgtaggtattgtttcaaaga
aggtaaaaatcctagtggggaatggtcatcaacactagaaaagcagtttg
tgctgaaactgttctttgaggatagtctgattatatctgtgacagagtta
ccatagaattactatttctggaggtttaaaacctgcctatattgttattt
gaaatcaagtcccacttctgattgctagaaaattaatgcatcatcataaa
tttttgactcatcctcagactcaatttataaattcttttgtctttgacag
cttattttgagcccgtatactgccttttaaattatttacactaacttttt
atggattgctgtaattccatagtatcctcttaagtaggttctctctttcc
tccccctttttctctcttccctgtcttttccaattaaaaattactgtatg
gtaactacacataataacaggtttcatcatgatatgcttataaaatgata
cagtgtacttgatcaaccctcctccaccattctcttgtcacattcccact
aatttcctcctcccatttagttatctccatctaaaggcatctgggggggt
tggaatagagttacttatgggcaacttattgggtacacaactgaaaaaaa
aggtctcttcctcctccagcaactattaactactttagagatcttcaaag
agggatgggggtttttgtgagtcccttttccacattacagaatgtctatg
atacttaggggctctgcttttcatatttagaacaggtgcctctagttcac
agataacaggggcacaggt

atgaggtcttccttgaggacctacaggtaattaatggttgctgaaggggc
aaagaatttgttcagtggcccatattgctgtaaataaccttcactcatgc
tccttcaaacaaccctaatcaaactcattgggtcatgaaacaaacaaaca
cgaaaacaaaagacatcaaagttgaaaaagaactagttaggaaaaggaaa
gagaattaaattttttattgttttattttatttgcttctctacttttgtt
ttattttgttttgctttgttggttgattagttggttggggtttttgtttt
gtttttgtttttgtttttttgaaggctggcttggttggtttgcttggttg
gttgattggttgattgcttggttgattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_22107408_22108469
seq2: B6Ng01-172F02.b_43_1111

seq1  GAATTCAGCTAAGAGAATGGGATTGTTAACATTCCCGGACACATTTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTAAGAGAATGGGATTGTTAACATTCCCGGACACATTTTTGG  50

seq1  AGGACTTCTGTAACATCTTTCAAGAGGAATGTGTATACCTTTCCTTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTCTGTAACATCTTTCAAGAGGAATGTGTATACCTTTCCTTCCTT  100

seq1  TATCTTCTTTGGACTATCTCTGGACCAGTCCCTCTACTCTAGGCAACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCTTTGGACTATCTCTGGACCAGTCCCTCTACTCTAGGCAACATG  150

seq1  CTGTAAACAGCGTGAACACAATGTCTTTCTTAATTTTTACACTTCGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAACAGCGTGAACACAATGTCTTTCTTAATTTTTACACTTCGTCTT  200

seq1  TTCAATCATTTTTTTCTATTGGCAAAATGCATATGTCCCTTGGTGACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCATTTTTTTCTATTGGCAAAATGCATATGTCCCTTGGTGACAAG  250

seq1  TATGCTTTATATTCTGCATTCACTGTTCATTGTAGGTATTGTTTCAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTATATTCTGCATTCACTGTTCATTGTAGGTATTGTTTCAAAGA  300

seq1  AGGTAAAAATCCTAGTGGGGAATGGTCATCAACACTAGAAAAGCAGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAAATCCTAGTGGGGAATGGTCATCAACACTAGAAAAGCAGTTTG  350

seq1  TGCTGAAACTGTTCTTTGAGGATAGTCTGATTATATCTGTGACAGAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAACTGTTCTTTGAGGATAGTCTGATTATATCTGTGACAGAGTTA  400

seq1  CCATAGAATTACTATTTCTGGAGGTTTAAAACCTGCCTATATTGTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAATTACTATTTCTGGAGGTTTAAAACCTGCCTATATTGTTATTT  450

seq1  GAAATCAAGTCCCACTTCTGATTGCTAGAAAATTAATGCATCATCATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAAGTCCCACTTCTGATTGCTAGAAAATTAATGCATCATCATAAA  500

seq1  TTTTTGACTCATCCTCAGACTCAATTTATAAATTCTTTTGTCTTTGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGACTCATCCTCAGACTCAATTTATAAATTCTTTTGTCTTTGACAG  550

seq1  CTTATTTTGAGCCCGTATACTGCCTTTTAAATTATTTACACTAACTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTGAGCCCGTATACTGCCTTTTAAATTATTTACACTAACTTTTT  600

seq1  ATGGATTGCTGTAATTCCATAGTATCCTCTTAAGTAGGTTCTCTCTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTGCTGTAATTCCATAGTATCCTCTTAAGTAGGTTCTCTCTTTCC  650

seq1  TCCCCCTTTTTCTCTCTTCCCTGTCTTTTCCAATTAAAAATTACTGTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTTTTTCTCTCTTCCCTGTCTTTTCCAATTAAAAATTACTGTATG  700

seq1  GTAACTACACATAATAACAGGTTTCATCATGATATGCTTATAAAATGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTACACATAATAACAGGTTTCATCATGATATGCTTATAAAATGATA  750

seq1  CAGTGTACTTGATCAACCCTCCTCCACCATTCTCTTGTCACATTCCCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTACTTGATCAACCCTCCTCCACCATTCTCTTGTCACATTCCCACT  800

seq1  AATTTCCTCCTCCCATTTAGTTATCTCCATCTAAAGGCATCT-GGGGGGT  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AATTTCCTCCTCCCATTTAGTTATCTCCATCTAAAGGCATCTGGGGGGGT  850

seq1  TGGAATAGAGTTACTTATGGGCAACTTATTGGGTACACAACTGAAAAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAGAGTTACTTATGGGCAACTTATTGGGTACACAACTGAAAAAAA  900

seq1  AGGTCTCTTCCTCCTCCAGCAACTATTAACTAC-TTAGAGATCTTCAAGG  948
      ||||||||||||||||||||||||||||||||| |||||||||||||| |
seq2  AGGTCTCTTCCTCCTCCAGCAACTATTAACTACTTTAGAGATCTTCAAAG  950

seq1  AGGGATGGGGG-TTTTGTGAGTCCCTTTTCCACATTACAG-ATGTCTATG  996
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  AGGGATGGGGGTTTTTGTGAGTCCCTTTTCCACATTACAGAATGTCTATG  1000

seq1  ATACTTA-GGGCTCTGTTTTTCATATTTTAGACAGGTG-CTCTAGTTCAC  1044
      ||||||| |||||||| |||||||||||   ||||||| |||||||||||
seq2  ATACTTAGGGGCTCTGCTTTTCATATTTAGAACAGGTGCCTCTAGTTCAC  1050

seq1  AG-TTACAGGGGAACAGGT  1062
      || | ||||||| ||||||
seq2  AGATAACAGGGGCACAGGT  1069


seq1: chr3_22252450_22252832
seq2: B6Ng01-172F02.g_65_448 (reverse)

seq1  CAATCAACCAAGCAATCAACCAATCAACCAACCAAGC-AACCAACCAAGC  49
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAATCAACCAAGCAATCAACCAATCAACCAACCAAGCAAACCAACCAAGC  50

seq1  CAGCCTTCAAAAAAACAAAAACAAAAACAAAACAAAAACCCCAACCAACT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTCAAAAAAACAAAAACAAAAACAAAACAAAAACCCCAACCAACT  100

seq1  AATCAACCAACAAAGCAAAACAAAATAAAACAAAAGTAGAGAAGCAAATA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACCAACAAAGCAAAACAAAATAAAACAAAAGTAGAGAAGCAAATA  150

seq1  AAATAAAACAATAAAAAATTTAATTCTCTTTCCTTTTCCTAACTAGTTCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACAATAAAAAATTTAATTCTCTTTCCTTTTCCTAACTAGTTCT  200

seq1  TTTTCAACTTTGATGTCTTTTGTTTTCGTGTTTGTTTGTTTCATGACCCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACTTTGATGTCTTTTGTTTTCGTGTTTGTTTGTTTCATGACCCA  250

seq1  ATGAGTTTGATTAGGGTTGTTTGAAGGAGCATGAGTGAAGGTTATTTACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTTGATTAGGGTTGTTTGAAGGAGCATGAGTGAAGGTTATTTACA  300

seq1  GCAATATGGGCCACTGAACAAATTCTTTGCCCCTTCAGCAACCATTAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATGGGCCACTGAACAAATTCTTTGCCCCTTCAGCAACCATTAATT  350

seq1  ACCTGTAGGTCCTCAAGGAAGACCTCATGAATTC  383
      ||||||||||||||||||||||||||||||||||
seq2  ACCTGTAGGTCCTCAAGGAAGACCTCATGAATTC  384


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