BAC Information

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BAC

Clone NameB6Ng01-172G18
Chromosome3 (Build37)
Map Location 90,998,941 - 90,999,595
singlet/doubletsinglet
Overlap genenone
Upstream geneNup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
Downstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172G18.g
ACCGA001040
length851
definitionB6Ng01-172G18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttataatctgcctttcggattcccctggagtgttcccagggctt
gaggaatctggaatttgtcctttctgaatcaatggtccccatcaaaaggg
tctccccattagttactatgagggttttgaatgctgcatgaatgaccttt
tttcatggattgtcactgtgaattctaccccaatggatccaggattgcct
tcaggaaataatgggctggtacctgcgccctctctgtcctccttgattat
tcatgcccggtgtggggttggtgcatgtgtcggttgcacactgttcccca
acacttggtaatatcaagataggtgtctaaaggaactgtggaatccgggc
tggcgatttatatttggcttgctgcattgaagaatgagcggggaagccat
cactccatagggttgtaaggctaagcactgcacagaggttagtatggaag
ctgtttgacaatttaagggaggtatgtctgattgaatgaggattgagtgt
cctagtgtcctccccccaggaaaaaaacgacacgggaggaggtcagggtt
gctctgggtaaaaacttgtgagcctaagagtcaatcctgtacatggcccc
tattttctgcacattggggatcagacctctatcttcacccacggagcttg
cttcaaaagaatataaagggggaattgtgggaagccattctggactccct
ggccagcccggatggaaatctgtgccaggcagtaaacagcccatatttgg
tggatggctcgcccttaatccctgattggctgagcaagcctgcctggtga
ggtgatgtgaccttcggtgattggttgaaggcgtgtttgtggccttgatt
g
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90998941_90999595
seq2: B6Ng01-172G18.g_258_914 (reverse)

seq1  CACTCAA-GCCACAACCACGCC-TCAACCAATAACTGAAGGTCACATCAC  48
      || |||| ||||||| |||||| ||||||||| || ||||||||||||||
seq2  CAATCAAGGCCACAAACACGCCTTCAACCAATCACCGAAGGTCACATCAC  50

seq1  CTCACCAGGCAGGATTGCTCAGCCAATCAGGGATTAAGGGCAAGCCATCC  98
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  CTCACCAGGCAGGCTTGCTCAGCCAATCAGGGATTAAGGGCGAGCCATCC  100

seq1  ACCAAATATGGGCTTGTTTACTGCCTGGCCCTGATTTCCATCCGGGCTGG  148
      ||||||||||||| ||||||||||||||| | ||||||||||||||||||
seq2  ACCAAATATGGGC-TGTTTACTGCCTGGCACAGATTTCCATCCGGGCTGG  149

seq1  CCAGGGAGTCCAGAATGGCTTCCCACAATTCCCCCTTTTATATTCTTTTG  198
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCAGGGAGTCCAGAATGGCTTCCCACAATTCCCCC-TTTATATTCTTTTG  198

seq1  AAGCAAGCTCCATAGGTGAAGTTAGAGGTCTGATCCCCAATGTGCAG-AA  247
      ||||||||||| | ||||||| ||||||||||||||||||||||||| ||
seq2  AAGCAAGCTCCGTGGGTGAAGATAGAGGTCTGATCCCCAATGTGCAGAAA  248

seq1  ATAGGGGCCATGTACAGGATTGACTCTTAGGCTCACAGGTTTTTACCCAG  297
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATAGGGGCCATGTACAGGATTGACTCTTAGGCTCACAAGTTTTTACCCAG  298

seq1  AGCAACCCTGACCTGCTCCCATGTCG-TTTTTTCCTGGGGGGAGGACACT  346
      |||||||||||||| ||||| ||||| |||||||||||||||||||||||
seq2  AGCAACCCTGACCTCCTCCCGTGTCGTTTTTTTCCTGGGGGGAGGACACT  348

seq1  AGGACACTCAATCCTCATTCAATCAGACATACCTCCCTTAAATTGTCAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACTCAATCCTCATTCAATCAGACATACCTCCCTTAAATTGTCAAA  398

seq1  CAGCTTCCATACTAACCTCTGTGCAGTGCTTAGCCTTACAACCCTATGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCATACTAACCTCTGTGCAGTGCTTAGCCTTACAACCCTATGGA  448

seq1  GTGATGGCTTCATTGTTCATTCTTCATGGCAGCAAGCCAAATCTGAGGTG  496
      |||||||||||   | ||||||||||  |||||||||||||| | |   |
seq2  GTGATGGCTTCCCCGCTCATTCTTCAATGCAGCAAGCCAAATATAAATCG  498

seq1  ACTGCCCTGCTTCCACTGTGGCAAAAG--------CTTG-CACCACCATG  537
       | |||| | |||||| ||  |   ||        ||||  |  ||||  
seq2  CCAGCCCGGATTCCACAGTTCCTTTAGACACCTATCTTGATATTACCA--  546

seq1  GCGGCAGTGCGGACCTGGG--CATTCTGCAACCGACACATACACCATACA  585
           ||||  |    |||  || | |||||||||||||| |||||  | 
seq2  -----AGTGTTG----GGGAACAGTGTGCAACCGACACATGCACCAACCC  587

seq1  CACAACCTGCATGCCAAATCAAGGGCCACAGCGAGGGCACCTATCCCAGC  635
      |||| |  |||||   ||||||||   |||| |||||| |   | |||||
seq2  CACACCGGGCATGAATAATCAAGGAGGACAGAGAGGGCGCAGGTACCAGC  637

seq1  CCATTCTTTCCCGAAGCCAA  655
      ||||| ||||| |||| |||
seq2  CCATTATTTCCTGAAGGCAA  657