BAC Information

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BAC

Clone NameB6Ng01-172H22
Chromosome3 (Build37)
Map Location 144,229,726 - 144,347,479
singlet/doubletdoublet
Overlap geneHs2st1, Sep15, LOC435761
Upstream geneEG668889, EG621809, LOC100039938, LOC100039952, Lmo4, LOC545572
Downstream geneSh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172H22.bB6Ng01-172H22.g
ACCGA001095GA001096
length8351,130
definitionB6Ng01-172H22.b B6Ng01-172H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,229,726 - 144,230,560)(144,346,350 - 144,347,479)
sequence
gaattcctatttagataatttcccaagaggccagtaacgatgccttagtt
ttgaatacacctattgctatactggagatagatctccccatctatattgt
tgactttaaccaggttgcattacggtcattaacagacattacaacccttt
ggaatcttctacagccaaaaaaaaaaaaaaaaaaaaaaaactataaaaac
tatttttaagggtaaaatgttcaatagccttccaatgccaaaataaaaat
gctttttaatgctgcatcttacaattacaccaaacaaccaaaggttttct
tcttcaatagcaggaacaagctattttagcccatttcgctgagtaatata
attacgttcattacatggatataagcaaagggcaaggcattatagcaatt
cctttgtgtcagaaattgagttttctcagaacaatattcattctcagcaa
tatatgcatcgataacacaatttataaatgctattcaaagagctcaactg
cagtagaatgccactacaaagtctcaaaccgcttgtgtaattacaggagt
cctcaattaggaagcaaacatacctgccttccaattctgactccaccagt
tacttactggtgatacaatcctggcctgatcatataatttaaggattatt
ctgtatttgaaaaatagttatctctggagttcttggaagattagataaga
atatcacagacaacagttatccagtcacgacctgagtcttttgtctcttt
cctggggagtccggataacggtcagtgtctcagtactgacttttaagcaa
tactggttttataagggggtgggagtgggaaggag
gaattctacatcgagattggcaggcagtaggaaaagaaacactgggcctg
gcttgagcatctgaatccccaaagcccagccccagtaacaaacttcctcc
aacaaggccacacctactccaacaaggccatgcctcctaattcctgttac
ttagtaccactccctcatgagcaagtgttcaaatatatgagcctgcaagg
gccagtcctattcaaaacaccacagagatctgtctataaaaatcatctca
cttcctaaaaagagaactattagaagaggggtgagactttgctcagaaaa
cagtccagatctgcttctacacggggaaaaaccaagtgggagagtttgag
cttcaaaatgctaaatcatagctcggaaacatgatcaggttagcttggaa
ttgctcaaagcacacataatggcatggtatgttctaaagaaatctcatta
tacgtgcataacaggactaactgtaccccatgaaccttcctaacaaagtt
catttcataatggaaccctggaaaactaaatgaatttaccttcaacacag
ggtgtttggatataaacgagttacatgcaggattctaaaataatggtgag
tttagaacactttctcataacccattcttttagagagcactagacagcaa
gtcccgcagaacttaaatatgtggttcatacggcaaattattcacgtaag
ctcataggccctaggattcctcgctgataaaaggaaaatgttagaaatca
gatcacgaacgtctttcacgctcttgtatcccaacagacttgagaaaagc
ccaagtttttcaagttttaataataaactaaaccacacttactcaccgga
acagtatgcacaattctagtggtggctgttggtggggtgagtttgcttat
atgttaattaccaagctgcctcgatcaaaattgttgggctgataagtaac
ccaggagacatttgggaatcccttctcaatcagaacggaccggtacccag
tccttcctcttcagaggaactggacacacaccatgctgactgtagtgttt
ctatgagcccttatgaaacagtggcacggcatctgtgatttcaggctttc
aggaattccttccgaaattactgataacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144229726_144230560
seq2: B6Ng01-172H22.b_41_875

seq1  GAATTCCTATTTAGATAATTTCCCAAGAGGCCAGTAACGATGCCTTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTTAGATAATTTCCCAAGAGGCCAGTAACGATGCCTTAGTT  50

seq1  TTGAATACACCTATTGCTATACTGGAGATAGATCTCCCCATCTATATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATACACCTATTGCTATACTGGAGATAGATCTCCCCATCTATATTGT  100

seq1  TGACTTTAACCAGGTTGCATTACGGTCATTAACAGACATTACAACCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTAACCAGGTTGCATTACGGTCATTAACAGACATTACAACCCTTT  150

seq1  GGAATCTTCTACAGCCAAAAAAAAAAAAAAAAAAAAAAAACTATAAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTTCTACAGCCAAAAAAAAAAAAAAAAAAAAAAAACTATAAAAAC  200

seq1  TATTTTTAAGGGTAAAATGTTCAATAGCCTTCCAATGCCAAAATAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAGGGTAAAATGTTCAATAGCCTTCCAATGCCAAAATAAAAAT  250

seq1  GCTTTTTAATGCTGCATCTTACAATTACACCAAACAACCAAAGGTTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTAATGCTGCATCTTACAATTACACCAAACAACCAAAGGTTTTCT  300

seq1  TCTTCAATAGCAGGAACAAGCTATTTTAGCCCATTTCGCTGAGTAATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAATAGCAGGAACAAGCTATTTTAGCCCATTTCGCTGAGTAATATA  350

seq1  ATTACGTTCATTACATGGATATAAGCAAAGGGCAAGGCATTATAGCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACGTTCATTACATGGATATAAGCAAAGGGCAAGGCATTATAGCAATT  400

seq1  CCTTTGTGTCAGAAATTGAGTTTTCTCAGAACAATATTCATTCTCAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGTCAGAAATTGAGTTTTCTCAGAACAATATTCATTCTCAGCAA  450

seq1  TATATGCATCGATAACACAATTTATAAATGCTATTCAAAGAGCTCAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCATCGATAACACAATTTATAAATGCTATTCAAAGAGCTCAACTG  500

seq1  CAGTAGAATGCCACTACAAAGTCTCAAACCGCTTGTGTAATTACAGGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAATGCCACTACAAAGTCTCAAACCGCTTGTGTAATTACAGGAGT  550

seq1  CCTCAATTAGGAAGCAAACATACCTGCCTTCCAATTCTGACTCCACCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATTAGGAAGCAAACATACCTGCCTTCCAATTCTGACTCCACCAGT  600

seq1  TACTTACTGGTGATACAATCCTGGCCTGATCATATAATTTAAGGATTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTGGTGATACAATCCTGGCCTGATCATATAATTTAAGGATTATT  650

seq1  CTGTATTTGAAAAATAGTTATCTCTGGAGTTCTTGGAAGATTAGATAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTGAAAAATAGTTATCTCTGGAGTTCTTGGAAGATTAGATAAGA  700

seq1  ATATCACAGACAACAGTTATCCAGTCACGACCTGAGTCTTTTGTCTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACAGACAACAGTTATCCAGTCACGACCTGAGTCTTTTGTCTCTTT  750

seq1  CCTGGGGAGTCCGGATAACGGTCAGTGTCTCAGTACTGACTTTTAAGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGAGTCCGGATAACGGTCAGTGTCTCAGTACTGACTTTTAAGCAA  800

seq1  TACTGGTTTTATAAGGGGGTGGGAGTGGGAAGGAG  835
      |||||||||||||||||||||||||||||||||||
seq2  TACTGGTTTTATAAGGGGGTGGGAGTGGGAAGGAG  835

seq1: chr3_144346350_144347479
seq2: B6Ng01-172H22.g_65_1194 (reverse)

seq1  GTGTTATCAGTATTTTC-GAAGGGAATCCTGAAGGCCCTGAATCCACAGG  49
      |||||||||||| |||| ||||| | ||||||| | ||||||  |||| |
seq2  GTGTTATCAGTAATTTCGGAAGGAATTCCTGAAAG-CCTGAAATCACA-G  48

seq1  ATGCCGTGCCACTG-TTCATAAAGGCTCATTAGAACCACTACCAAGTCAG  98
      |||||||||||||| ||||||| |||||| ||||| ||||||  ||||||
seq2  ATGCCGTGCCACTGTTTCATAAGGGCTCA-TAGAAACACTAC--AGTCAG  95

seq1  CATGGTGTGTGTCCAGTTCCTCTGA--GGGGAGGGCTGGGTCCGGGTCCG  146
      |||||||||||||||||||||||||   || ||| |||||| | ||||||
seq2  CATGGTGTGTGTCCAGTTCCTCTGAAGAGGAAGGACTGGGTACCGGTCCG  145

seq1  TCCTGGTTGAG-AGGGATTCCCAAATGTCTCCT-GGTTACTTATCAGCCC  194
      | ||| ||||| ||||||||||||||||||||| ||||||||||||||||
seq2  TTCTGATTGAGAAGGGATTCCCAAATGTCTCCTGGGTTACTTATCAGCCC  195

seq1  AAACATTCTGACCGA-GCAGCTTTGTAATTTAACATATAAGCAAACTCAC  243
      ||  ||| ||| ||| ||||||| |||| |||||||||||||||||||||
seq2  AACAATTTTGATCGAGGCAGCTTGGTAA-TTAACATATAAGCAAACTCAC  244

seq1  CCCACCCAACAGCCACCACTAGAATTGTGCATACTGTTCCGGTGAGTAAG  293
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCA-CCAACAGCCACCACTAGAATTGTGCATACTGTTCCGGTGAGTAAG  293

seq1  TGTGGTTTAGTTTATTATTAAAACTTGAAAAACTTGGGCTTTTCTCAAGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTAGTTTATTATTAAAACTTGAAAAACTTGGGCTTTTCTCAAGT  343

seq1  CTGTTGGGATACAAGAGCGTGAAAGACGTTCGTGATCTGATTTCTAACAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGGATACAAGAGCGTGAAAGACGTTCGTGATCTGATTTCTAACAT  393

seq1  TTTCCTTTTATCAGCGAGGAATCCTAGGGCCTATGAGCTTACGTGAATAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTATCAGCGAGGAATCCTAGGGCCTATGAGCTTACGTGAATAA  443

seq1  TTTGCCGTATGAACCACATATTTAAGTTCTGCGGGACTTGCTGTCTAGTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCGTATGAACCACATATTTAAGTTCTGCGGGACTTGCTGTCTAGTG  493

seq1  CTCTCTAAAAGAATGGGTTATGAGAAAGTGTTCTAAACTCACCATTATTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAAAAGAATGGGTTATGAGAAAGTGTTCTAAACTCACCATTATTT  543

seq1  TAGAATCCTGCATGTAACTCGTTTATATCCAAACACCCTGTGTTGAAGGT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCCTGCATGTAACTCGTTTATATCCAAACACCCTGTGTTGAAGGT  593

seq1  AAATTCATTTAGTTTTCCAGGGTTCCATTATGAAATGAACTTTGTTAGGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATTTAGTTTTCCAGGGTTCCATTATGAAATGAACTTTGTTAGGA  643

seq1  AGGTTCATGGGGTACAGTTAGTCCTGTTATGCACGTATAATGAGATTTCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCATGGGGTACAGTTAGTCCTGTTATGCACGTATAATGAGATTTCT  693

seq1  TTAGAACATACCATGCCATTATGTGTGCTTTGAGCAATTCCAAGCTAACC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACATACCATGCCATTATGTGTGCTTTGAGCAATTCCAAGCTAACC  743

seq1  TGATCATGTTTCCGAGCTATGATTTAGCATTTTGAAGCTCAAACTCTCCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATGTTTCCGAGCTATGATTTAGCATTTTGAAGCTCAAACTCTCCC  793

seq1  ACTTGGTTTTTCCCCGTGTAGAAGCAGATCTGGACTGTTTTCTGAGCAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTTTTTCCCCGTGTAGAAGCAGATCTGGACTGTTTTCTGAGCAAA  843

seq1  GTCTCACCCCTCTTCTAATAGTTCTCTTTTTAGGAAGTGAGATGATTTTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACCCCTCTTCTAATAGTTCTCTTTTTAGGAAGTGAGATGATTTTT  893

seq1  ATAGACAGATCTCTGTGGTGTTTTGAATAGGACTGGCCCTTGCAGGCTCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAGATCTCTGTGGTGTTTTGAATAGGACTGGCCCTTGCAGGCTCA  943

seq1  TATATTTGAACACTTGCTCATGAGGGAGTGGTACTAAGTAACAGGAATTA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGAACACTTGCTCATGAGGGAGTGGTACTAAGTAACAGGAATTA  993

seq1  GGAGGCATGGCCTTGTTGGAGTAGGTGTGGCCTTGTTGGAGGAAGTTTGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCATGGCCTTGTTGGAGTAGGTGTGGCCTTGTTGGAGGAAGTTTGT  1043

seq1  TACTGGGGCTGGGCTTTGGGGATTCAGATGCTCAAGCCAGGCCCAGTGTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGGCTGGGCTTTGGGGATTCAGATGCTCAAGCCAGGCCCAGTGTT  1093

seq1  TCTTTTCCTACTGCCTGCCAATCTCGATGTAGAATTC  1130
      |||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTACTGCCTGCCAATCTCGATGTAGAATTC  1130