BAC Information

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BAC

Clone NameB6Ng01-172I06
Chromosome3 (Build37)
Map Location 26,841,084 - 26,958,720
singlet/doubletdoublet
Overlap geneSpata16, LOC665258
Upstream geneNlgn1, LOC229152
Downstream geneEct2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b, E030011K20Rik, Pld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172I06.bB6Ng01-172I06.g
ACCGA001111GA001112
length554841
definitionB6Ng01-172I06.b B6Ng01-172I06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,958,167 - 26,958,720)(26,841,084 - 26,841,686)
sequence
gaattccttcctctgctttttctgactccagaataaaagaggtctttttg
tatcagagcccctaatggcaaggcaagacccctggggttcccattcttcc
aggcatcacgtcagcaatcagcctctggccccagaagacaaggccatctt
tgcctttgtgtctgaaatgagagttcaccactcaacccgggaaatctgtg
ggcacctgcaggctgaaaagtgaaaattgatttcctttcaccttgtcaca
gatctgaatgtcacctcagaaagtctcaggatttaattgatctatgacaa
gttgatggcaacctcaaccccctcttgaataattaagaatattaactagg
ttgacggtaactggcaaccctaagaaggggaatctgcttctcctttggag
atcttaccatgaagcgtgtgagtagaactcaaagcttgcaagtgctttcg
actagcttcacttggtcatttggaggtggctttgaagcatccaagagagc
taaactacaatgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtg
tgtg

gaattcaggatttatttctaagttgtaaaaagtttcctatgaaagttctc
taaaggggggggggggacagaaagatcctaagtggggcaaggcaaaattg
gtatgcctctctttgtcctcagcacttatatatctttcagaatacacgat
cacatggtaaaaagttcatcacaagtttatatataaattcaaatcataaa
ctgatatagaagtttacaacagagaatgtttacatgcatatccattagga
gtatttatctagctaaacattcatcagtgtcacagctccacaagttcatt
gaaaggtaaaaaccataacttattagtgaagttttacatagaaaaaccca
gtcaaaattttatcttctgtcctagaacctacaataaatcattagttccc
attttatgacctttggttaatgattttacaacctcttggaatgtgctctg
agaagtagaaagtctccttactgtcagaaacaattaactggtgacacatg
tgagatgagcagagatctcattgcagttttgactatcagaaggaacataa
tagcagtcctactataaaagaacttaataaatactgatataattttagga
tttcttttaggatcattattaagaattaagaagtcatctatttgtctatg
taggcatcactacaaaacagtacatcttcatagatcagaagagatctgct
caaaagggtaggctgataccttagtgatggttatatgttttaataataac
aggacatattatattattagcaggaatccttcataaaatgatttttctcc
tgggccttgtctatgggcagcaaatatatcctggattattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_26958167_26958720
seq2: B6Ng01-172I06.b_45_598 (reverse)

seq1  CACACACACATACACACACACACACACACACACACACACAAACATTGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACATACACACACACACACACACACACACACACAAACATTGTAG  50

seq1  TTTAGCTCTCTTGGATGCTTCAAAGCCACCTCCAAATGACCAAGTGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTCTCTTGGATGCTTCAAAGCCACCTCCAAATGACCAAGTGAAGC  100

seq1  TAGTCGAAAGCACTTGCAAGCTTTGAGTTCTACTCACACGCTTCATGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCGAAAGCACTTGCAAGCTTTGAGTTCTACTCACACGCTTCATGGTA  150

seq1  AGATCTCCAAAGGAGAAGCAGATTCCCCTTCTTAGGGTTGCCAGTTACCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCCAAAGGAGAAGCAGATTCCCCTTCTTAGGGTTGCCAGTTACCG  200

seq1  TCAACCTAGTTAATATTCTTAATTATTCAAGAGGGGGTTGAGGTTGCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTAGTTAATATTCTTAATTATTCAAGAGGGGGTTGAGGTTGCCAT  250

seq1  CAACTTGTCATAGATCAATTAAATCCTGAGACTTTCTGAGGTGACATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGTCATAGATCAATTAAATCCTGAGACTTTCTGAGGTGACATTCA  300

seq1  GATCTGTGACAAGGTGAAAGGAAATCAATTTTCACTTTTCAGCCTGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTGACAAGGTGAAAGGAAATCAATTTTCACTTTTCAGCCTGCAGG  350

seq1  TGCCCACAGATTTCCCGGGTTGAGTGGTGAACTCTCATTTCAGACACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACAGATTTCCCGGGTTGAGTGGTGAACTCTCATTTCAGACACAAA  400

seq1  GGCAAAGATGGCCTTGTCTTCTGGGGCCAGAGGCTGATTGCTGACGTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGATGGCCTTGTCTTCTGGGGCCAGAGGCTGATTGCTGACGTGAT  450

seq1  GCCTGGAAGAATGGGAACCCCAGGGGTCTTGCCTTGCCATTAGGGGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAAGAATGGGAACCCCAGGGGTCTTGCCTTGCCATTAGGGGCTCT  500

seq1  GATACAAAAAGACCTCTTTTATTCTGGAGTCAGAAAAAGCAGAGGAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAAAAGACCTCTTTTATTCTGGAGTCAGAAAAAGCAGAGGAAGGA  550

seq1  ATTC  554
      ||||
seq2  ATTC  554


seq1: chr3_26841084_26841686
seq2: B6Ng01-172I06.g_65_667

seq1  GAATTCAGGATTTATTTCTAAGTTGTAAAAAGTTTCCTATGAAAGTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGATTTATTTCTAAGTTGTAAAAAGTTTCCTATGAAAGTTCTC  50

seq1  TAAAGGGGGGGGGGGGACAGAAAGATCCTAAGTGGGGCAAGGCAAAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGGGGGGGGGGACAGAAAGATCCTAAGTGGGGCAAGGCAAAATTG  100

seq1  GTATGCCTCTCTTTGTCCTCAGCACTTATATATCTTTCAGAATACACGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCCTCTCTTTGTCCTCAGCACTTATATATCTTTCAGAATACACGAT  150

seq1  CACATGGTAAAAAGTTCATCACAAGTTTATATATAAATTCAAATCATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTAAAAAGTTCATCACAAGTTTATATATAAATTCAAATCATAAA  200

seq1  CTGATATAGAAGTTTACAACAGAGAATGTTTACATGCATATCCATTAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATAGAAGTTTACAACAGAGAATGTTTACATGCATATCCATTAGGA  250

seq1  GTATTTATCTAGCTAAACATTCATCAGTGTCACAGCTCCACAAGTTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATCTAGCTAAACATTCATCAGTGTCACAGCTCCACAAGTTCATT  300

seq1  GAAAGGTAAAAACCATAACTTATTAGTGAAGTTTTACATAGAAAAACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTAAAAACCATAACTTATTAGTGAAGTTTTACATAGAAAAACCCA  350

seq1  GTCAAAATTTTATCTTCTGTCCTAGAACCTACAATAAATCATTAGTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATTTTATCTTCTGTCCTAGAACCTACAATAAATCATTAGTTCCC  400

seq1  ATTTTATGACCTTTGGTTAATGATTTTACAACCTCTTGGAATGTGCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGACCTTTGGTTAATGATTTTACAACCTCTTGGAATGTGCTCTG  450

seq1  AGAAGTAGAAAGTCTCCTTACTGTCAGAAACAATTAACTGGTGACACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAGAAAGTCTCCTTACTGTCAGAAACAATTAACTGGTGACACATG  500

seq1  TGAGATGAGCAGAGATCTCATTGCAGTTTTGACTATCAGAAGGAACATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGAGCAGAGATCTCATTGCAGTTTTGACTATCAGAAGGAACATAA  550

seq1  TAGCAGTCCTACTATAAAAGAACTTAATAAATACTGATATAATTTTAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTCCTACTATAAAAGAACTTAATAAATACTGATATAATTTTAGGA  600

seq1  TTT  603
      |||
seq2  TTT  603


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