BAC Information

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BAC

Clone NameB6Ng01-172J10
Chromosome3 (Build37)
Map Location 88,693,616 - 88,816,835
singlet/doubletdoublet
Overlap geneMsto1, Dap3, Ash1l
Upstream geneHdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik
Downstream geneRusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172J10.bB6Ng01-172J10.g
ACCGA001163GA001164
length917850
definitionB6Ng01-172J10.b B6Ng01-172J10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,693,616 - 88,694,522)(88,815,990 - 88,816,835)
sequence
gaattccattgcccttcaccagcagttcaaccccaggttccagaccttat
tccagccttgtaactggatgggagctatgcggctcattgaagacttcacc
caagtcagcattgactgcagccctcataaaaccgccaagaagactggtag
gagatgactgtgtcaagtccaggttgagattggcagtgaaagactcgagt
ctttaatgtgtttgctgtgattcttagggcacaggagatttgtaatttat
tctctctgtcttctatacattcaaggagaccgggcatgtagctcattggt
aaagtacttacctatacggagagacaaatgttcatagttcatttctaact
tgaggcttaactcccacagcactattacattcaagttgggaatgtcactg
ctactttctatattttttaaaattgtatttatatatctaattccgcacgc
gtgcgcacacacacacacacacacacacacacacacacacgaagagagag
gagaggaagggagcacacataccatagtacaccggacagctttgggtgtt
gtttctccctctaccttgtgggtcccaggaagtgagttcaggccatcagc
aggcccagtagcaggtttgtctactgagacatctcactggcacccagagg
gaataaccaaattgtaatttttttatctggaaagaacaaacgtcttgttt
gaagatctttttgtcttgtagagactttttttttttttttttcttcgaga
cagggcttctcttgtgtagcccctgggctgtcctggaactcactctgtag
accaggctggcctcaaacttcagatattccaccttgcctctgtcctccca
cgtgtagggactaaaggcatgctcccatcacgcccggctgcttgtggtgg
attctcttagagccttg
gaattcttcatagtagtaatatttcaagtgttgctcatggaacatataca
tcaaatctgtttggagtttgttagcaatgaacatgtccgaatggaggatg
taactcagaagaagagtaggtacttagcatgtgtgaagacccatcatcta
aaactaaaaagaaatgcaaaaataaaagaaaatctgaaacaaccccagca
aaaaacaaaagcaataaaaagaaaggaaaggaaaatagatgctagaggct
aaggcagaaaggatggtgaattcaaggcctgtcaatactatgaaagcaag
gtcaaagtcaaatcaaacaatgcagtgagaccctgcctatgaagacaaac
aaataaaacaacagaatcaaagacaaatgcctgtatctggaatgccatta
aattagctgtgaggtccaggacgggtttttttccacaccccccacctccc
gccccgcttgctctggccccacttgctccagccctaggatggatatttta
agtaaccttgttggtctttgacttggccctaacactatggactggattgt
tatcttttcttcatcatgtagagccaaactgattccagtcctgctctaac
atccaattgtaagtaatatagtgactctgctatgtgaggacatcaaggtc
tgagaactgtcttattctggagtgaagggggcctggggattgaacacagg
gtctgtagcatgaaactttaagagctctatcattgaaatacatcccttct
aagttttgggggttttgtttattgttgtttgcgtgcttgctttttgtttt
ctcagatcacactggtcttgaccttgctacacatccaaggaaggatctaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88693616_88694522
seq2: B6Ng01-172J10.b_43_959

seq1  GAATTCCATTGCCCTTCACCAGCAGTTCAACCCCAGGTTCCAGACCTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGCCCTTCACCAGCAGTTCAACCCCAGGTTCCAGACCTTAT  50

seq1  TCCAGCCTTGTAACTGGATGGGAGCTATGCGGCTCATTGAAGACTTCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCTTGTAACTGGATGGGAGCTATGCGGCTCATTGAAGACTTCACC  100

seq1  CAAGTCAGCATTGACTGCAGCCCTCATAAAACCGCCAAGAAGACTGGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAGCATTGACTGCAGCCCTCATAAAACCGCCAAGAAGACTGGTAG  150

seq1  GAGATGACTGTGTCAAGTCCAGGTTGAGATTGGCAGTGAAAGACTCGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGACTGTGTCAAGTCCAGGTTGAGATTGGCAGTGAAAGACTCGAGT  200

seq1  CTTTAATGTGTTTGCTGTGATTCTTAGGGCACAGGAGATTTGTAATTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATGTGTTTGCTGTGATTCTTAGGGCACAGGAGATTTGTAATTTAT  250

seq1  TCTCTCTGTCTTCTATACATTCAAGGAGACCGGGCATGTAGCTCATTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGTCTTCTATACATTCAAGGAGACCGGGCATGTAGCTCATTGGT  300

seq1  AAAGTACTTACCTATACGGAGAGACAAATGTTCATAGTTCATTTCTAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTTACCTATACGGAGAGACAAATGTTCATAGTTCATTTCTAACT  350

seq1  TGAGGCTTAACTCCCACAGCACTATTACATTCAAGTTGGGAATGTCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTTAACTCCCACAGCACTATTACATTCAAGTTGGGAATGTCACTG  400

seq1  CTACTTTCTATATTTTTTAAAATTGTATTTATATATCTAATTCCGCACGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTCTATATTTTTTAAAATTGTATTTATATATCTAATTCCGCACGC  450

seq1  GTGCGCACACACACACACACACACACACACACACACACACGAAGAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCACACACACACACACACACACACACACACACACACGAAGAGAGAG  500

seq1  GAGAGGAAGGGAGCACACATACCATAGTACACCGGACAGCTTTGGGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAAGGGAGCACACATACCATAGTACACCGGACAGCTTTGGGTGTT  550

seq1  GTTTCTCCCTCTACCTTGTGGGTCCCAGGAAGTGAGTTCAGGCCATCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCCCTCTACCTTGTGGGTCCCAGGAAGTGAGTTCAGGCCATCAGC  600

seq1  AGGCCCAGTAGCAGGTTTGTCTACTGAGACATCTCACTGGCACCCAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGTAGCAGGTTTGTCTACTGAGACATCTCACTGGCACCCAGAGG  650

seq1  GAATAACCAAATTGTAATTTTTTTATCTGGAAAGAACAAACGTCTTG-TT  699
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAATAACCAAATTGTAATTTTTTTATCTGGAAAGAACAAACGTCTTGTTT  700

seq1  GAAGATCTTTTTGTCTTGTAGAGACTTTTTTTTTTTTTTTTTCTTCGAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCTTTTTGTCTTGTAGAGACTTTTTTTTTTTTTTTTTCTTCGAGA  750

seq1  CAGGGCTTCTC-TGTGTAGCCC--TGGCTGTCCTGGAACTCACTCTGTAG  796
      ||||||||||| ||||||||||   |||||||||||||||||||||||||
seq2  CAGGGCTTCTCTTGTGTAGCCCCTGGGCTGTCCTGGAACTCACTCTGTAG  800

seq1  ACCAGGCTGGCCTCAAAC-TCAGA-AATCCACC-TGCCTCTG-CCTCCCA  842
      |||||||||||||||||| ||||| | |||||| |||||||| |||||||
seq2  ACCAGGCTGGCCTCAAACTTCAGATATTCCACCTTGCCTCTGTCCTCCCA  850

seq1  CGTGCAGGGACTAAAGGCATGC-GCCACCACGCCCGGCTGCGTGT-GTGG  890
      |||| |||||||||||||||||  ||| ||||||||||||| ||| ||||
seq2  CGTGTAGGGACTAAAGGCATGCTCCCATCACGCCCGGCTGCTTGTGGTGG  900

seq1  GTTCTCTTAGTGCCTTG  907
       ||||||||| ||||||
seq2  ATTCTCTTAGAGCCTTG  917

seq1: chr3_88815990_88816835
seq2: B6Ng01-172J10.g_67_916 (reverse)

seq1  TTAGAT-CATCCTTGGATGTGTAGCAAGGTCAAGACCAGTGTGATCTGAG  49
      |||||| | |||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCCTTCCTTGGATGTGTAGCAAGGTCAAGACCAGTGTGATCTGAG  50

seq1  AAAACAAAAAGCAAGCACGCAAACAACAAT-AACAAAA-CCCCAAAACTT  97
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  AAAACAAAAAGCAAGCACGCAAACAACAATAAACAAAACCCCCAAAACTT  100

seq1  AGAAGGGATGTATTTCAATGATAGAGCTCTT-AAGTTTCATGCTACAGAC  146
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGAAGGGATGTATTTCAATGATAGAGCTCTTAAAGTTTCATGCTACAGAC  150

seq1  CCTGTGTTCAATCCCCAGGCCCCCTTCACTCCAGAATAAGACAGTTCTCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTCAATCCCCAGGCCCCCTTCACTCCAGAATAAGACAGTTCTCA  200

seq1  GACCTTGATGTCCTCACATAGCAGAGTCACTATATTACTTACAATTGGAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGATGTCCTCACATAGCAGAGTCACTATATTACTTACAATTGGAT  250

seq1  GTTAGAGCAGGACTGGAATCAGTTTGGCTCTACATGATGAAGAAAAGATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGCAGGACTGGAATCAGTTTGGCTCTACATGATGAAGAAAAGATA  300

seq1  ACAATCCAGTCCATAGTGTTAGGGCCAAGTCAAAGACCAACAAGGTTACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCAGTCCATAGTGTTAGGGCCAAGTCAAAGACCAACAAGGTTACT  350

seq1  TAAAATATCCATCCTAGGGCTGGAGCAAGTGGGGCCAGAGCAAGCGGGGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATCCATCCTAGGGCTGGAGCAAGTGGGGCCAGAGCAAGCGGGGC  400

seq1  GGGAGGTGGGGGGTGTGGAAAAAAACCCGTCCTGGACCTCACAGCTAATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGGGGGGTGTGGAAAAAAACCCGTCCTGGACCTCACAGCTAATT  450

seq1  TAATGGCATTCCAGATACAGGCATTTGTCTTTGATTCTGTTGTTTTATTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCATTCCAGATACAGGCATTTGTCTTTGATTCTGTTGTTTTATTT  500

seq1  GTTTGTCTTCATAGGCAGGGTCTCACTGCATTGTTTGATTTGACTTTGAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCTTCATAGGCAGGGTCTCACTGCATTGTTTGATTTGACTTTGAC  550

seq1  CTTGCTTTCATAGTATTGACAGGCCTTGAATTCACCATCCTTTCTGCCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTCATAGTATTGACAGGCCTTGAATTCACCATCCTTTCTGCCTT  600

seq1  AGCCTCTAGCATCTATTTTCCTTTCCTTTCTTTTTATTGCTTTTGTTTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTAGCATCTATTTTCCTTTCCTTTCTTTTTATTGCTTTTGTTTTT  650

seq1  TGCTGGGGTTGTTTCAGATTTTCTTTTATTTTTGCATTTCTTTTTAGTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGTTGTTTCAGATTTTCTTTTATTTTTGCATTTCTTTTTAGTTT  700

seq1  TAGATGATGGGTCTTCACACATGCTAAGTACCTACTCTTCTTCTGAGTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGATGGGTCTTCACACATGCTAAGTACCTACTCTTCTTCTGAGTTA  750

seq1  CATCCTCCATTCGGACATGTTCATTGCTAACAAACTCCAAACAGATTTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCCATTCGGACATGTTCATTGCTAACAAACTCCAAACAGATTTGA  800

seq1  TGTATATGTTCCATGAGCAACACTTGAAATATTACTACTATGAAGAATTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGTTCCATGAGCAACACTTGAAATATTACTACTATGAAGAATTC  850