BAC Information

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BAC

Clone NameB6Ng01-172L20
Chromosome3 (Build37)
Map Location 50,376,414 - 50,428,689
singlet/doubletdoublet
Overlap geneEG621304, LOC100039667
Upstream geneLOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11
Downstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172L20.bB6Ng01-172L20.g
ACCGA001278GA001279
length9761,043
definitionB6Ng01-172L20.b B6Ng01-172L20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,376,414 - 50,376,991)(50,427,650 - 50,428,689)
sequence
gaattcagctcaccatttttatctaggtctcagggctgtactcaactttg
tcaagagaaattgtaaaaaaaagtcaaaatctgacctgagccctggggga
gctgactctgggcactggctttccacccactctgcctatacccagaggca
gcttgatctcgaggagttctgacacagtcaggataacaggctcacaggct
gcagtcagagacagcaaggccagttaccaccagagataaccagatggtga
gaggcaagcacaagaacataagcaacagaaaccaatgtgacttggcaata
tcagaacccagtgatcccaccaaagcaagccctagatactacaacatatc
tgaaaagcaagattcagatctaaaatcccatttcatgaagatgatagagg
actttaaaatggacataatacaattcttttaaagaaagtcagggtgactg
gagagatgactcagtgattaagaacactgactgttcttccaaaggtcctg
agttcaattcccagcaaccacatggtggctcacaaccatctgtaatgggg
tttggtgctctcttctggtgtctctgaatcagctacactgtacctatata
aataaaataaatacatgcatgccatttaaaaaaaaagaaaagaaaaaaga
aattcataacataggtaaacaggtagaagcccttgcagaggaaataaatt
actctcataaagtacaggaaaatacaatcaaacaggtgaaggaattgaac
aacactatccagggtctataaatagaaatagaaacattaaaaaaaaaaca
caaagagagacaagcctggatatggaaaacctagtaaagagagcaggagt
cacagatgcaagcatcaccaacagaatacaagagatagaagagagaatct
caggcatagaagataccatagaaaacattgacacaacagttaaaaaaaac
atacaaaaagcaaaaaactcctaact
gaattcttttgatttgggtttccctctgacagagatggcaatgtagagtg
tcaccatgaccatgaaggattattagtagttttatgtaagctttgttaat
catctgtcttctggcccagtctccaaaggcttgtttcagactcccaggga
gaagaggctctcacaaagtatgatccaaggaaagcttatccacatggact
agacccctggccaggtggtgttgttgcctagtaacagtgttcaaccttaa
gaactcaaaggtagacagagaacagctacaaccgtgctttctgtgtggca
gctggctataagcttgagtctctgggctcagtcaggagaactgcttatga
agggaagcaataactgctatcagtctgcaagttcacatgtacaggacagc
agaaatggtagagaacacaccaaaaaaaaatcatgaaaaactggtaatca
cgatgtggtcgaaattaaatggaaaaaatgccttgatgacctccttgaat
agctgaagagaatttcccaatgaagtgtctcggtttggccagacagaagc
tgtaggtctttgcttgttagtttgctgttgtggttaagctgattggtaag
ctgaggctacctgttgatgcatcatagtcagttgtagagactcaatggcc
atcagacattggattctacttattactgacattgctattataatatttgt
gacccaataataatattttcttatggcaagtgtacaatatcactaacaaa
aaaatctgttagacatcaatgaaataaagctggacaatagaagcttataa
aaaaatcttaaaaaaaataatctgtataaatattggcctgtagattccac
catgaagcttgaacagaatgttctcaataaaagttctggggatgttttgc
ggagttagcttttagattttatttcatgccaaaggataattcttatcatt
tgcatatcagagtgttttatttttatttttggaatggggatagttcccat
gatcagaagaactttcatcagcacacattcagttcagactcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_50376414_50376991
seq2: B6Ng01-172L20.b_50_627

seq1  GAATTCAGCTCACCATTTTTATCTAGGTCTCAGGGCTGTACTCAACTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCACCATTTTTATCTAGGTCTCAGGGCTGTACTCAACTTTG  50

seq1  TCAAGAGAAATTGTAAAAAAAAGTCAAAATCTGACCTGAGCCCTGGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGAAATTGTAAAAAAAAGTCAAAATCTGACCTGAGCCCTGGGGGA  100

seq1  GCTGACTCTGGGCACTGGCTTTCCACCCACTCTGCCTATACCCAGAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTCTGGGCACTGGCTTTCCACCCACTCTGCCTATACCCAGAGGCA  150

seq1  GCTTGATCTCGAGGAGTTCTGACACAGTCAGGATAACAGGCTCACAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATCTCGAGGAGTTCTGACACAGTCAGGATAACAGGCTCACAGGCT  200

seq1  GCAGTCAGAGACAGCAAGGCCAGTTACCACCAGAGATAACCAGATGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGAGACAGCAAGGCCAGTTACCACCAGAGATAACCAGATGGTGA  250

seq1  GAGGCAAGCACAAGAACATAAGCAACAGAAACCAATGTGACTTGGCAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAGCACAAGAACATAAGCAACAGAAACCAATGTGACTTGGCAATA  300

seq1  TCAGAACCCAGTGATCCCACCAAAGCAAGCCCTAGATACTACAACATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACCCAGTGATCCCACCAAAGCAAGCCCTAGATACTACAACATATC  350

seq1  TGAAAAGCAAGATTCAGATCTAAAATCCCATTTCATGAAGATGATAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGCAAGATTCAGATCTAAAATCCCATTTCATGAAGATGATAGAGG  400

seq1  ACTTTAAAATGGACATAATACAATTCTTTTAAAGAAAGTCAGGGTGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAATGGACATAATACAATTCTTTTAAAGAAAGTCAGGGTGACTG  450

seq1  GAGAGATGACTCAGTGATTAAGAACACTGACTGTTCTTCCAAAGGTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGACTCAGTGATTAAGAACACTGACTGTTCTTCCAAAGGTCCTG  500

seq1  AGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGG  550

seq1  TTTGGTGCTCTCTTCTGGTGTCTCTGAA  578
      ||||||||||||||||||||||||||||
seq2  TTTGGTGCTCTCTTCTGGTGTCTCTGAA  578

seq1: chr3_50427650_50428689
seq2: B6Ng01-172L20.g_64_1106 (reverse)

seq1  TAGAGTTCTGAACTGAATGTGTGCTG-TG-AAGTTCTTCTGATCATGGGA  48
      ||||| |||||||||||||||||||| || ||||||||||||||||||||
seq2  TAGAG-TCTGAACTGAATGTGTGCTGATGAAAGTTCTTCTGATCATGGGA  49

seq1  ACTATCCCCATTCCAAAA--TAAAATAAAACACTCTGATATGCAAATGAT  96
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  ACTATCCCCATTCCAAAAATAAAAATAAAACACTCTGATATGCAAATGAT  99

seq1  AAGAA-TATCCTTTGGCATGAAATAAAATCTAAAAGCTAACTCCGCAAAA  145
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTATCCTTTGGCATGAAATAAAATCTAAAAGCTAACTCCGCAAAA  149

seq1  CATCCCCAGAACTTTTATTTGAGAACATTCTGTTCAAGCTTCATGGTGGA  195
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CATCCCCAGAACTTTTA-TTGAGAACATTCTGTTCAAGCTTCATGGTGGA  198

seq1  ATCTACAGGCCAATATTTATACAGATTATTTTTTTTAAGATTTTTTTATA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAGGCCAATATTTATACAGATTATTTTTTTTAAGATTTTTTTATA  248

seq1  AGCTTCTATTGTCCAGCTTTATTTCATTGATGTCTAACAGATTTTTTTGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTATTGTCCAGCTTTATTTCATTGATGTCTAACAGATTTTTTTGT  298

seq1  TAGTGATATTGTACACTTGCCATAAGAAAATATTATTATTGGGTCACAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATATTGTACACTTGCCATAAGAAAATATTATTATTGGGTCACAAA  348

seq1  TATTATAATAGCAATGTCAGTAATAAGTAGAATCCAATGTCTGATGGCCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAATAGCAATGTCAGTAATAAGTAGAATCCAATGTCTGATGGCCA  398

seq1  TTGAGTCTCTACAACTGACTATGATGCATCAACAGGTAGCCTCAGCTTAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCTCTACAACTGACTATGATGCATCAACAGGTAGCCTCAGCTTAC  448

seq1  CAATCAGCTTAACCACAACAGCAAACTAACAAGCAAAGACCTACAGCTTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGCTTAACCACAACAGCAAACTAACAAGCAAAGACCTACAGCTTC  498

seq1  TGTCTGGCCAAACCGAGACACTTCATTGGGAAATTCTCTTCAGCTATTCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGCCAAACCGAGACACTTCATTGGGAAATTCTCTTCAGCTATTCA  548

seq1  AGGAGGTCATCAAGGCATTTTTTCCATTTAATTTCGACCACATCGTGATT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTCATCAAGGCATTTTTTCCATTTAATTTCGACCACATCGTGATT  598

seq1  ACCAGTTTTTCATGATTTTTTTTTGGTGTGTTCTCTACCATTTCTGCTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTTTTCATGATTTTTTTTTGGTGTGTTCTCTACCATTTCTGCTGT  648

seq1  CCTGTACATGTGAACTTGCAGACTGATAGCAGTTATTGCTTCCCTTCATA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACATGTGAACTTGCAGACTGATAGCAGTTATTGCTTCCCTTCATA  698

seq1  AGCAGTTCTCCTGACTGAGCCCAGAGACTCAAGCTTATAGCCAGCTGCCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTCTCCTGACTGAGCCCAGAGACTCAAGCTTATAGCCAGCTGCCA  748

seq1  CACAGAAAGCACGGTTGTAGCTGTTCTCTGTCTACCTTTGAGTTCTTAAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAGCACGGTTGTAGCTGTTCTCTGTCTACCTTTGAGTTCTTAAG  798

seq1  GTTGAACACTGTTACTAGGCAACAACACCACCTGGCCAGGGGTCTAGTCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACACTGTTACTAGGCAACAACACCACCTGGCCAGGGGTCTAGTCC  848

seq1  ATGTGGATAAGCTTTCCTTGGATCATACTTTGTGAGAGCCTCTTCTCCCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATAAGCTTTCCTTGGATCATACTTTGTGAGAGCCTCTTCTCCCT  898

seq1  GGGAGTCTGAAACAAGCCTTTGGAGACTGGGCCAGAAGACAGATGATTAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCTGAAACAAGCCTTTGGAGACTGGGCCAGAAGACAGATGATTAA  948

seq1  CAAAGCTTACATAAAACTACTAATAATCCTTCATGGTCATGGTGACACTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTTACATAAAACTACTAATAATCCTTCATGGTCATGGTGACACTC  998

seq1  TACATTGCCATCTCTGTCAGAGGGAAACCCAAATCAAAAGAATTC  1040
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGCCATCTCTGTCAGAGGGAAACCCAAATCAAAAGAATTC  1043