BAC Information

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BAC

Clone NameB6Ng01-172M19
Chromosome3 (Build37)
Map Location 148,968,753 - 149,066,416
singlet/doubletdoublet
Overlap geneEG381483
Upstream geneLOC100040354, Lphn2, LOC100040368, LOC668893
Downstream geneLOC100040620, LOC100040633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172M19.bB6Ng01-172M19.g
ACCGA001319GA001320
length1,1261,083
definitionB6Ng01-172M19.b B6Ng01-172M19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,065,294 - 149,066,416)(148,968,753 - 148,969,869)
sequence
gaattcatttcatcccatcttataccattaaatctgttccaggctctaga
ccctgtggcaagctttgcaaaggtaagggtatgcttgcacactcctcctg
ccgtttcttacccgggttttagtaattgtttgctgatttagtaaccagtt
taaaatcaaaatctgaatgttacttaacccactgctgtatcataaatatt
ataatgctctcttctcattttccagaaggtttccaaaggttgtaaaaaaa
tagattttatgaaaaacaactctaaaatatacaccggcacctggcatcct
gtgactttctgaaagctctttgctacttaccagtacaggctttttctgtg
ctttaataaatcccaattttcatagctttcatgtcttaaacattccaagt
tcgagttatatttggtggaaacttggcatagagttttcagtttcaaatat
ttacagctacatcgatgtacacacacactcacacacacacacacactcat
tcctttaatctatagacttgtaaggattaatggcacaaagaataaattat
aaaacacttcaggtgcttagctgagtgagataaaaataagggggcttcat
tgtcctcagcggaagggagcttagtgtcagctcgtggtccacacaaggca
gagctgcaggaccggaaccgagagcaatgtgcagaagccggtctgggaag
agcagcgtggagaagaaggttccccagcgcctgcctacagccttcagcct
cccccacacatagcagcttctgcatcctcacaggtgttctctgggcaacc
agggcctctttaatctatggttgcacatgtgtggtgagccactgtctcct
gactgtcactatctccacacaccccaggttagaccaaggttcctcgtcta
ttcatttaatgcacaattgtttaatatcctcatccgctgcaaaatggaga
aagggctttgcttcctgcagctggcacgtcttccctcttgcttgttgttt
tatcttgggggagactggtgaactttgtttgtatcagagccccaaggcca
aatggccttcccatttacatggatatgctatggagtatggactgccaggt
gggttagaaagaaaaggatcttgaga

gaattcagttagacataaataaaaggcagatctcttgttggcaagatctg
ccgtgatgagcaaagcctgtggtttcaatgcagggttttcctgattgtgc
agacatctctgattgtccccctgaaccccacttgcctggggaatatctac
tctcttcagtactccgttctgtttatccttggtgatgtccagaagggact
gtcctaaacctctctagaaatctactctacaattacatgcatccacttag
cagtttccaacagttctaggatctggtactaaccaggagactctctagtc
tttagattttatgaaacacttttgtgtcttatgaggccataaaagcatta
gctcttcatgaatagcagggttttgtttttgctttttgtttgttttgctt
tattttgtttgtaactcaatagttacacttattagtttattaattaaacc
tactactaaatagtaggtttaggatatagctcaatagtgaagctcttact
tagtagcatgtgtgacagagggccttgatgcagttccaagcatagtacat
taagaaaagaaaagttattatatttaaaagctgggtgtgatcactcatgc
ctaaaatcatcacgtgtgaaaggccgaggcaagagaattgctgtgagttc
caggccagcctaggttatagagagagaccctgtttcaaaaaacgaaaatg
atttacaagcagctgatggtgacatgctgtgcctagggctgccagtatgc
tttgtctccaggacccgactcaggcaaggtttttcatacaaataaaaaaa
aaaaaaaactgtgtaaaccggcttctgaggaccacatttctaattgcttt
tctgagaaagctggagtctttaaagtttggtgattaatgaataccaaggc
aaatattctaaacctgggtagataatcaatatgttatcagtagaggagta
aacagcattgagtagagcaagatttttgtagagaccgatgataaagtgat
ttgaacttggcagtctgcccatacgagccagctagcttccagcatgttat
gtcacagattaaacctgatgagtctatggccgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_149065294_149066416
seq2: B6Ng01-172M19.b_44_1169 (reverse)

seq1  TCTC-AGATCCTTTTCTTTCT-ACCCACTGGCCAGTCATTACTCAATAGC  48
      |||| |||||||||||||||| ||||||  | |||||  ||||| |||||
seq2  TCTCAAGATCCTTTTCTTTCTAACCCACCTGGCAGTCCATACTCCATAGC  50

seq1  ATAATTCCATGTTAATTGGAAGG-CATTT-GCCTTGGGGCTCTTGATACA  96
      |||  ||||||| ||| |||||| ||||| |||||||||||| |||||||
seq2  ATA--TCCATGTAAATGGGAAGGCCATTTGGCCTTGGGGCTC-TGATACA  97

seq1  AACAAAGTTCA-CAGTCT-CCCCAAGATAAAACAACAAGCAAGAGGGAAG  144
      ||||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  AACAAAGTTCACCAGTCTCCCCCAAGATAAAACAACAAGCAAGAGGGAAG  147

seq1  ACGTGCCAGCTGCAGGAAGCAAAGCCCTTTCTCCATTTTGCAGCGGATGA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCCAGCTGCAGGAAGCAAAGCCCTTTCTCCATTTTGCAGCGGATGA  197

seq1  GGATATTAAACAATTGTGCATTAAATGAATAGACGAGGAACCTTGGTCTA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTAAACAATTGTGCATTAAATGAATAGACGAGGAACCTTGGTCTA  247

seq1  ACCTGGGGTGTGTGGAGATAGTGACAGTCAGGAGACAGTGGCTCACCACA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGGTGTGTGGAGATAGTGACAGTCAGGAGACAGTGGCTCACCACA  297

seq1  CATGTGCAACCATAGATTAAAGAGGCCCTGGTTGCCCAGAGAACACCTGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCAACCATAGATTAAAGAGGCCCTGGTTGCCCAGAGAACACCTGT  347

seq1  GAGGATGCAGAAGCTGCTATGTGTGGGGGAGGCTGAAGGCTGTAGGCAGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGCAGAAGCTGCTATGTGTGGGGGAGGCTGAAGGCTGTAGGCAGG  397

seq1  CGCTGGGGAACCTTCTTCTCCACGCTGCTCTTCCCAGACCGGCTTCTGCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGGGGAACCTTCTTCTCCACGCTGCTCTTCCCAGACCGGCTTCTGCA  447

seq1  CATTGCTCTCGGTTCCGGTCCTGCAGCTCTGCCTTGTGTGGACCACGAGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTCTCGGTTCCGGTCCTGCAGCTCTGCCTTGTGTGGACCACGAGC  497

seq1  TGACACTAAGCTCCCTTCCGCTGAGGACAATGAAGCCCCCTTATTTTTAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTAAGCTCCCTTCCGCTGAGGACAATGAAGCCCCCTTATTTTTAT  547

seq1  CTCACTCAGCTAAGCACCTGAAGTGTTTTATAATTTATTCTTTGTGCCAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCAGCTAAGCACCTGAAGTGTTTTATAATTTATTCTTTGTGCCAT  597

seq1  TAATCCTTACAAGTCTATAGATTAAAGGAATGAGTGTGTGTGTGTGTGTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTTACAAGTCTATAGATTAAAGGAATGAGTGTGTGTGTGTGTGTG  647

seq1  AGTGTGTGTGTACATCGATGTAGCTGTAAATATTTGAAACTGAAAACTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGTGTACATCGATGTAGCTGTAAATATTTGAAACTGAAAACTCT  697

seq1  ATGCCAAGTTTCCACCAAATATAACTCGAACTTGGAATGTTTAAGACATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAGTTTCCACCAAATATAACTCGAACTTGGAATGTTTAAGACATG  747

seq1  AAAGCTATGAAAATTGGGATTTATTAAAGCACAGAAAAAGCCTGTACTGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTATGAAAATTGGGATTTATTAAAGCACAGAAAAAGCCTGTACTGG  797

seq1  TAAGTAGCAAAGAGCTTTCAGAAAGTCACAGGATGCCAGGTGCCGGTGTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGCAAAGAGCTTTCAGAAAGTCACAGGATGCCAGGTGCCGGTGTA  847

seq1  TATTTTAGAGTTGTTTTTCATAAAATCTATTTTTTTACAACCTTTGGAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGAGTTGTTTTTCATAAAATCTATTTTTTTACAACCTTTGGAAA  897

seq1  CCTTCTGGAAAATGAGAAGAGAGCATTATAATATTTATGATACAGCAGTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGGAAAATGAGAAGAGAGCATTATAATATTTATGATACAGCAGTG  947

seq1  GGTTAAGTAACATTCAGATTTTGATTTTAAACTGGTTACTAAATCAGCAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGTAACATTCAGATTTTGATTTTAAACTGGTTACTAAATCAGCAA  997

seq1  ACAATTACTAAAACCCGGGTAAGAAACGGCAGGAGGAGTGTGCAAGCATA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTACTAAAACCCGGGTAAGAAACGGCAGGAGGAGTGTGCAAGCATA  1047

seq1  CCCTTACCTTTGCAAAGCTTGCCACAGGGTCTAGAGCCTGGAACAGATTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACCTTTGCAAAGCTTGCCACAGGGTCTAGAGCCTGGAACAGATTT  1097

seq1  AATGGTATAAGATGGGATGAAATGAATTC  1123
      |||||||||||||||||||||||||||||
seq2  AATGGTATAAGATGGGATGAAATGAATTC  1126


seq1: chr3_148968753_148969869
seq2: B6Ng01-172M19.g_62_1144

seq1  GAATTCAGTTAGACATAAATAAAAGGCAGATCTCTTGTTGGCAAGATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTAGACATAAATAAAAGGCAGATCTCTTGTTGGCAAGATCTG  50

seq1  CCGTGATGAGCAAAGCCTGTGGTTTCAATGCAGGGTTTTCCTGATTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGATGAGCAAAGCCTGTGGTTTCAATGCAGGGTTTTCCTGATTGTGC  100

seq1  AGACATCTCTGATTGTCCCCCTGAACCCCACTTGCCTGGGGAATATCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCTCTGATTGTCCCCCTGAACCCCACTTGCCTGGGGAATATCTAC  150

seq1  TCTCTTCAGTACTCCGTTCTGTTTATCCTTGGTGATGTCCAGAAGGGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCAGTACTCCGTTCTGTTTATCCTTGGTGATGTCCAGAAGGGACT  200

seq1  GTCCTAAACCTCTCTAGAAATCTACTCTACAATTACATGCATCCACTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAACCTCTCTAGAAATCTACTCTACAATTACATGCATCCACTTAG  250

seq1  CAGTTTCCAACAGTTCTAGGATCTGGTACTAACCAGGAGACTCTCTAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCAACAGTTCTAGGATCTGGTACTAACCAGGAGACTCTCTAGTC  300

seq1  TTTAGATTTTATGAAACACTTTTGTGTCTTATGAGGCCATAAAAGCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTTTATGAAACACTTTTGTGTCTTATGAGGCCATAAAAGCATTA  350

seq1  GCTCTTCATGAATAGCAGGGTTTTGTTTTTGCTTTTTGTTTGTTTTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCATGAATAGCAGGGTTTTGTTTTTGCTTTTTGTTTGTTTTGCTT  400

seq1  TATTTTGTTTGTAACTCAATAGTTACACTTATTAGTTTATTAATTAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTTGTAACTCAATAGTTACACTTATTAGTTTATTAATTAAACC  450

seq1  TACTACTAAATAGTAGGTTTAGGATATAGCTCAATAGTGAAGCTCTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTAAATAGTAGGTTTAGGATATAGCTCAATAGTGAAGCTCTTACT  500

seq1  TAGTAGCATGTGTGACAGAGGGCCTTGATGCAGTTCCAAGCATAGTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGCATGTGTGACAGAGGGCCTTGATGCAGTTCCAAGCATAGTACAT  550

seq1  TAAGAAAAGAAAAGTTATTATATTTAAAAGCTGGGTGTGATCACTCATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAGAAAAGTTATTATATTTAAAAGCTGGGTGTGATCACTCATGC  600

seq1  CTAAAATCATCACGTGTGAAAGGCCGAGGCAAGAGAATTGCTGTGAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATCATCACGTGTGAAAGGCCGAGGCAAGAGAATTGCTGTGAGTTC  650

seq1  CAGGCCAGCCTAGGTTATAGAGAGAGACCCTGTTTCAAAAAACGAAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGCCTAGGTTATAGAGAGAGACCCTGTTTCAAAAAACGAAAATG  700

seq1  ATTTACAAGCAGCTGATGGTGACATGCTGTGCCTAGGGCTGCCAGTATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAAGCAGCTGATGGTGACATGCTGTGCCTAGGGCTGCCAGTATGC  750

seq1  TTTGTCTCCAGGACCCGACTCAGGGCAAGGTTTTTCATAAAAAAAAAAAA  800
      |||||||||||||||||||||| |||||||||||||||     | ||| |
seq2  TTTGTCTCCAGGACCCGACTCA-GGCAAGGTTTTTCAT-----ACAAATA  794

seq1  AAAAAAAAAAAAAACTGTGTAAACCGGCTTCTGAGGACCACA-TTCTAAT  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAAAAAAAAAAAACTGTGTAAACCGGCTTCTGAGGACCACATTTCTAAT  844

seq1  TGC-TTTCTGAGAAAGCTGGAGTCCTTAAAGTTTGGTGATTAAATGAATA  898
      ||| |||||||||||||||||||| |||||||||||||||| ||||||||
seq2  TGCTTTTCTGAGAAAGCTGGAGTCTTTAAAGTTTGGTGATT-AATGAATA  893

seq1  CCAAAGGCAAATA-TCTAAACCTGGGTAGAATAATCAAATATGTTAATCA  947
      || |||||||||| ||||||||||||||| |||||| |||||||| ||||
seq2  CC-AAGGCAAATATTCTAAACCTGGGTAG-ATAATC-AATATGTT-ATCA  939

seq1  GTAGGAGGAGTAAAACAGCAATTGAGTAAGAGCAAAGATTTTTGTAGGAG  997
      ||| ||||||| ||||||| ||||||| ||||| |||||||||||| |||
seq2  GTA-GAGGAGT-AAACAGC-ATTGAGT-AGAGC-AAGATTTTTGTA-GAG  983

seq1  ACCGATGGATTAAAAAGTGAATTTTAAAACTTGGGCAGGTCTGCCCATAC  1047
      |||||||    | |||||||   ||  ||||| |||| ||||||||||||
seq2  ACCGATG----ATAAAGTGA---TTTGAACTT-GGCA-GTCTGCCCATAC  1024

seq1  AGAGCAAGCTTAGCTTTCAAGCAGTGTTATGTTCACCAGATTAAAAACTG  1097
       |||| ||| |||| ||| |||| ||||||| ||| |||||| ||| |||
seq2  -GAGCCAGC-TAGC-TTCCAGCA-TGTTATG-TCA-CAGATT-AAACCTG  1067

seq1  ATGAAGTCTTAATGGGCCGG  1117
      ||| |||||  || ||||||
seq2  ATG-AGTCT--AT-GGCCGG  1083


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