BAC Information

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BAC

Clone NameB6Ng01-172P11
Chromosome3 (Build37)
Map Location 39,319,777 - 39,320,581
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4, LOC100041432, LOC100040853
Downstream geneLOC100041443, LOC100041458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172P11.bB6Ng01-172P11.g
ACCGA001443GA001444
length1,139818
definitionB6Ng01-172P11.b B6Ng01-172P11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcataccagtcagaatgcctaagatcataacttcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
gaattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactacctgaggatcctgcaatacctctcctgggc
atatatccagaagatattcctactggtaagaaggacacatgttcaactat
gttcatagcagccttatttataatatccagaagctggaaagtacccagat
gtccctcaacagaggaatggatacagaaaatgtggtacatttgtacaatg
gagtactactcagctattaaaaacaatgaatttatgaaattcctaggcaa
atgaatggaaccggagggcatcattctgagtgaggtaacacaatcacaaa
agaactcatatgatatttactcactgataagtggatattagcccagaaac
ttagaattcccaagatacaaaatacaatttacaaaacatttgaaactcaa
gaacaaagaccaaagtgtggacactttgccccttcttagaattgagaaca
aaatacctatggaaagagtgacagagacaaaatttggagctgagatgaaa
ggatggaccatctagagactgccatactcgggcatctatcccataatcag
cctccaattgctgacaccattgcatacactagtaagattttgctgaaagg
accctaatatagttgtctcttgtgaggctaggccaggtcttagctaacac
agaggtggatgctcactgtcagctattggatggatcacaggtcccccagg
tggaggatctagataaagtacccaaggagctaaggggtctgcaaccctat
gggtggaacagcatatggaactaagcagtacccccccggagctgtgtctg
tacctgcatatgtgtcgagatgcctagtcggcatcatggaagagagtctc
tgttcttgccaacttttatgctcctatcatcggaaccgc

gaattcatccttggctggcaagtgatgtgtcttagaccaagttcaatgtc
ataaaaaatgcttgaggctgggtgagttacaaacagaagagatggcttgc
tcagtgtcctggattttaaaagtcttccatcaaagtactggtactggcag
ggtctgggaattcttacatctcggtccttctttgtgttccaatatgaagg
agacttcttgacaaaagcaggaaacaggggtgagagctccaagctgaagg
cccaactaaataccctgtcacataatgttatcacattacgtagataacac
acattttcagcctatatcaggtacttttaatctaaagaaagtgaaatcag
tatgaaagggaagtaaagattgataataagttagtccccaaggagagtac
agatacatggtgcatacacagccataaagacaacattgctccatgtaaaa
taacaaccagtaagtagaaacacttagtgagtgtggaagagtaggatgtc
aaagcttgactttccctaaggagaggcacagataactgggggggaggttg
gacctgatgacactcttccgtgatttgtcggctctgtccctatattagac
aggaatttctaaaggaagagacctgagagaatgagtgaatatatatgaga
cttatcagcctggctataggtttgtactgtgagtattccagcctcatgat
tgtaaggttgagaatctggtaaatttctttttcttttttttttttaaatt
ttttttaaattaccgtatttttcctcaattacattttccaaatgctattc
ccaaatagttcccccata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_39319777_39320581
seq2: B6Ng01-172P11.g_65_882 (reverse)

seq1  TATGGGGG-ACT-TTTGGG-ATAGCATT--GGAAATGTAATTGAGG-AAA  44
      |||||||| ||| |||||| ||||||||  | |||||||||||||| |||
seq2  TATGGGGGAACTATTTGGGAATAGCATTTGGAAAATGTAATTGAGGAAAA  50

seq1  ATAC-GTAA-TTAAAAAAAATTTAAAAAAAAAA---GAAAAGAAA-TTAC  88
      |||| |||| |||||||||||||||||||||||    |||||||| ||||
seq2  ATACGGTAATTTAAAAAAAATTTAAAAAAAAAAAAGAAAAAGAAATTTAC  100

seq1  CAGATTCTCAACCTTACAATCATGAGGCTGGAATACTCACAGTAC-AACC  137
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGATTCTCAACCTTACAATCATGAGGCTGGAATACTCACAGTACAAACC  150

seq1  TATAGCCAGGCTGATAAGTCTCATATATATTCACTCATTCTCTCAGGTCT  187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCAGGCTGATAAGTCTCATATATATTCACTCATTCTCTCAGGTCT  200

seq1  CTTCCTTTAGAAATTCCTGTCTAATATAGGGACAGAGCCGACAAATCACG  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTAGAAATTCCTGTCTAATATAGGGACAGAGCCGACAAATCACG  250

seq1  GAAGAGTGTCATCAGGTCCAACCTCCCCCCCAGTTATCTGTGCCTCTCCT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTGTCATCAGGTCCAACCTCCCCCCCAGTTATCTGTGCCTCTCCT  300

seq1  TAGGGAAAGTCAAGCTTTGACATCCTACTCTTCCACACTCACTAAGTGTT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAAGTCAAGCTTTGACATCCTACTCTTCCACACTCACTAAGTGTT  350

seq1  TCTACTTACTGGTTGTTATTTTACATGGAGCAATGTTGTCTTTATGGCTG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTACTGGTTGTTATTTTACATGGAGCAATGTTGTCTTTATGGCTG  400

seq1  TGTATGCACCATGTATCTGTACTCTCCTTGGGGACTAACTTATTATCAAT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCACCATGTATCTGTACTCTCCTTGGGGACTAACTTATTATCAAT  450

seq1  CTTTACTTCCCTTTCATACTGATTTCACTTTCTTTAGATTAAAAGTACCT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTCCCTTTCATACTGATTTCACTTTCTTTAGATTAAAAGTACCT  500

seq1  GATATAGGCTGAAAATGTGTGTTATCTACGTAATGTGATAACATTATGTG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGGCTGAAAATGTGTGTTATCTACGTAATGTGATAACATTATGTG  550

seq1  ACAGGGTATTTAGTTGGGCCTTCAGCTTGGAGCTCTCACCCCTGTTTCCT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTATTTAGTTGGGCCTTCAGCTTGGAGCTCTCACCCCTGTTTCCT  600

seq1  GCTTTTGTCAAGAAGTCTCCTTCATATTGGAACACAAAGAAGGACCGAGA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGTCAAGAAGTCTCCTTCATATTGGAACACAAAGAAGGACCGAGA  650

seq1  TGTAAGAATTCCCAGACCCTGCCAGTACCAGTACTTTGATGGAAGACTTT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAATTCCCAGACCCTGCCAGTACCAGTACTTTGATGGAAGACTTT  700

seq1  TAAAATCCAGGACACTGAGCAAGCCATCTCTTCTGTTTGTAACTCACCCA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCCAGGACACTGAGCAAGCCATCTCTTCTGTTTGTAACTCACCCA  750

seq1  GCCTCAAGCATTTTTTATGACATTGAACTTGGTCTAAGACACATCACTTG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAGCATTTTTTATGACATTGAACTTGGTCTAAGACACATCACTTG  800

seq1  CCAGCCAAGGATGAATTC  805
      ||||||||||||||||||
seq2  CCAGCCAAGGATGAATTC  818


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