BAC Information

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BAC

Clone NameB6Ng01-173D18
Chromosome3 (Build37)
Map Location 63,236,889 - 63,288,377
singlet/doubletdoublet
Overlap genenone
Upstream gene4631416L12Rik, Dhx36, Gpr149, LOC676984, LOC666967, Mme
Downstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173D18.bB6Ng01-173D18.g
ACCGA001635GA001636
length1,172590
definitionB6Ng01-173D18.b B6Ng01-173D18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,287,227 - 63,288,377)(63,236,889 - 63,237,486)
sequence
gaattctccatgagtctataggtatatgcttgttaacagacaacattata
acaagagttgaaaccataggcatttgggcagcttctttttgtaacgtgct
tgtgtgacaaccaagaatagccattagagtaaataatgctgttgccactg
aaatcaagttggtaccctggctagtgagcttggacttcattacagaagct
gcaagttgtaatttgaacccaagtctctccaactgcaaatctaactgata
tttcaccctccctcttaggagggtgaaaactatcaatttcattttaattt
gcatatcctttcatcgaacattctgttcttgtatgaaatgttatgcaaat
aaaaatctgggtatctgtacattgggaaaactcagcttgctcacttgctt
aggtcatatacatacatagtctcttgtttctccacaataaaggttaaatg
ggagaaagaggagttgtgctttccaatgactcctgtcaccctgtagacga
ttggcagcaggagagcagcagctgccacactcttcagatatctctctatt
taaagttcaaagaggtgcaggataacaataaggaagaaagactcctggcc
ctgactaagccacccaacaatagaaataatggctgagaaaggtaagctga
aaagtatagaggtttcttggcaaaaatagctttcagattagtcaatttta
ttttttagcatttggaccctgagaaatgtaggatctatgttaaagaacca
ttagctacatattctgatgtggctgcaaaagcattaaatatgcagttttg
gatcatgtttgtaagatgaataattttgaaatgatcagtgaaacataata
atttcatacacgcttttttggaaaagtgaattgtgaactactatttctca
gtattgaactagctctgagatctttgggaatttgttgggcaagaagcaag
aacagttgagtgcttctgtcaggtcttgcaaggatggccggtgtgagttt
ggagaaggcctcttctccactgcttctgagtctaatattatgactgtcca
aataaagaaaatttggaggccttaatcaatctctgaatatggctcatatc
tgaataatttcctaatctaaaccattaatttcatatttatattgccttat
attaaaaatactgatccaatat
gaattcctgtctgatctacaaggcaggcaaagagaggaagattggagctg
gtgtgggtttttaaaacctcaaagcccatgccctgtggcacacttcctcc
aacaaggccatcttcctcattctttctaaacagttccaccaacctggaac
aagcattcaaatataagaccctaaatgggccatttgtattcaaatcacca
aaatggcccactccacaactcattaaggtctgtgagaagcaccatttcgg
ttagttattttgtgaatatttgaatttgttaggaaatgcctccagttttg
tgtaaccagggcttaaaatggtttaagaaattaaaacttatctcaacaaa
tgaaagaagtctgaaacagaggcatcctgaattgcagctcggcaaagcca
tcaagtttccaggacacttccaactttctacttattcagctgcaagtgtc
tgtgtgtatcttggtgtgtatatatttgtgtatgtctgtgtgtgtataac
tatgtgtatatatatatatatatatatatatatatatatatgtatatata
catatatatatatacacagagatatatatatatatacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_63287227_63288377
seq2: B6Ng01-173D18.b_41_1212 (reverse)

seq1  ATATTGGAATCAGT-TATTTTATATAAG--CATATAAATATGAAA-TAAT  46
      ||||||| |||||| | ||| |||||||   |||||||||||||| ||||
seq2  ATATTGG-ATCAGTATTTTTAATATAAGGCAATATAAATATGAAATTAAT  49

seq1  GTTTAAGAATTAGAAAATTTAATTCAGATATGAG-CATA-TCAGAGA-TG  93
      | || || ||||| |||||  ||||||||||||| |||| ||||||| ||
seq2  GGTTTAG-ATTAGGAAATT--ATTCAGATATGAGCCATATTCAGAGATTG  96

seq1  ATTAAG--CTC--AATATTC-TTATTT-GACAGTCATAATA-TAGACTCA  136
      ||||||  |||  ||| ||| |||||| ||||||||||||| ||||||||
seq2  ATTAAGGCCTCCAAATTTTCTTTATTTGGACAGTCATAATATTAGACTCA  146

seq1  G-AGCAGTG----AGAGAGCCTCTCCAAACTCACA-CGGCCATCC-TGC-  178
      | |||||||    ||||  | |||||||||||||| ||||||||| ||| 
seq2  GAAGCAGTGGAGAAGAGGCCTTCTCCAAACTCACACCGGCCATCCTTGCA  196

seq1  AGACCTGACAG-AGCACTCAACTGTTCTTGCTTCTGGCCCAAC-AATTCC  226
      ||||||||||| ||||||||||||||||||||||| ||||||| ||||||
seq2  AGACCTGACAGAAGCACTCAACTGTTCTTGCTTCTTGCCCAACAAATTCC  246

seq1  C-AAGATCTCAGAGCTAGTTCAATACTGAGAAATAGTAGTTCACAATTCA  275
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATCTCAGAGCTAGTTCAATACTGAGAAATAGTAGTTCACAATTCA  296

seq1  CTTTTCCAAAAAAGCGTGTATGAAATTATTATGTTTCACTGATCATTTCA  325
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCAAAAAAGCGTGTATGAAATTATTATGTTTCACTGATCATTTCA  346

seq1  AAATTATTCATCTTACAAACATGATCCAAAACTGCATATTTAATGCTTTT  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTCATCTTACAAACATGATCCAAAACTGCATATTTAATGCTTTT  396

seq1  GCAGCCACATCAGAATATGTAGCTAATGGTTCTTTAACATAGATCCTACA  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCACATCAGAATATGTAGCTAATGGTTCTTTAACATAGATCCTACA  446

seq1  TTTCTCAGGGTCCAAATGCTAAAAAATAAAATTGACTAATCTGAAAGCTA  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGGGTCCAAATGCTAAAAAATAAAATTGACTAATCTGAAAGCTA  496

seq1  TTTTTGCCAAGAAACCTCTATACTTTTCAGCTTACCTTTCTCAGCCATTA  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCAAGAAACCTCTATACTTTTCAGCTTACCTTTCTCAGCCATTA  546

seq1  TTTCTATTGTTGGGTGGCTTAGTCAGGGCCAGGAGTCTTTCTTCCTTATT  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTGTTGGGTGGCTTAGTCAGGGCCAGGAGTCTTTCTTCCTTATT  596

seq1  GTTATCCTGCACCTCTTTGAACTTTAAATAGAGAGATATCTGAAGAGTGT  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCTGCACCTCTTTGAACTTTAAATAGAGAGATATCTGAAGAGTGT  646

seq1  GGCAGCTGCTGCTCTCCTGCTGCCAATCGTCTACAGGGTGACAGGAGTCA  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTGCTGCTCTCCTGCTGCCAATCGTCTACAGGGTGACAGGAGTCA  696

seq1  TTGGAAAGCACAACTCCTCTTTCTCCCATTTAACCTTTATTGTGGAGAAA  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAGCACAACTCCTCTTTCTCCCATTTAACCTTTATTGTGGAGAAA  746

seq1  CAAGAGACTATGTATGTATATGACCTAAGCAAGTGAGCAAGCTGAGTTTT  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGACTATGTATGTATATGACCTAAGCAAGTGAGCAAGCTGAGTTTT  796

seq1  CCCAATGTACAGATACCCAGATTTTTATTTGCATAACATTTCATACAAGA  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGTACAGATACCCAGATTTTTATTTGCATAACATTTCATACAAGA  846

seq1  ACAGAATGTTCGATGAAAGGATATGCAAATTAAAATGAAATTGATAGTTT  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGTTCGATGAAAGGATATGCAAATTAAAATGAAATTGATAGTTT  896

seq1  TCACCCTCCTAAGAGGGAGGGTGAAATATCAGTTAGATTTGCAGTTGGAG  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTCCTAAGAGGGAGGGTGAAATATCAGTTAGATTTGCAGTTGGAG  946

seq1  AGACTTGGGTTCAAATTACAACTTGCAGCTTCTGTAATGAAGTCCAAGCT  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGGTTCAAATTACAACTTGCAGCTTCTGTAATGAAGTCCAAGCT  996

seq1  CACTAGCCAGGGTACCAACTTGATTTCAGTGGCAACAGCATTATTTACTC  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGCCAGGGTACCAACTTGATTTCAGTGGCAACAGCATTATTTACTC  1046

seq1  TAATGGCTATTCTTGGTTGTCACACAAGCACGTTACAAAAAGAAGCTGCC  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCTATTCTTGGTTGTCACACAAGCACGTTACAAAAAGAAGCTGCC  1096

seq1  CAAATGCCTATGGTTTCAACTCTTGTTATAATGTTGTCTGTTAACAAGCA  1125
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCCTATGGTTTCAACTCTTGTTATAATGTTGTCTGTTAACAAGCA  1146

seq1  TATACCTATAGACTCATGGAGAATTC  1151
      ||||||||||||||||||||||||||
seq2  TATACCTATAGACTCATGGAGAATTC  1172

seq1: chr3_63236889_63237486
seq2: B6Ng01-173D18.g_68_657

seq1  GAATTCCTGTCTGATCTACAAGGCAGGCAAAGAGAGGAAGATTGGAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCTGATCTACAAGGCAGGCAAAGAGAGGAAGATTGGAGCTG  50

seq1  GTGTGGGTTTTTAAAACCTCAAAGCCCATGCCCTGTGGCACACTTCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTTTTTAAAACCTCAAAGCCCATGCCCTGTGGCACACTTCCTCC  100

seq1  AACAAGGCCATCTTCCTCATTCTTTCTAAACAGTTCCACCAACCTGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGCCATCTTCCTCATTCTTTCTAAACAGTTCCACCAACCTGGAAC  150

seq1  AAGCATTCAAATATAAGACCCTAAATGGGCCATTTGTATTCAAATCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTCAAATATAAGACCCTAAATGGGCCATTTGTATTCAAATCACCA  200

seq1  AAATGGCCCACTCCACAACTCATTAAGGTCTGTGAGAAGCACCATTTCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCCCACTCCACAACTCATTAAGGTCTGTGAGAAGCACCATTTCGG  250

seq1  TTAGTTATTTTGTGAATATTTGAATTTGTTAGGAAATGCCTCCAGTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTATTTTGTGAATATTTGAATTTGTTAGGAAATGCCTCCAGTTTTG  300

seq1  TGTAACCAGGGCTTAAAATGGTTTAAGAAATTAAAACTTATCTCAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCAGGGCTTAAAATGGTTTAAGAAATTAAAACTTATCTCAACAAA  350

seq1  TGAAAGAAGTCTGAAACAGAGGCATCCTGAATTGCAGCTCGGCAAAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAAGTCTGAAACAGAGGCATCCTGAATTGCAGCTCGGCAAAGCCA  400

seq1  TCAAGTTTCCAGGACACTTCCAACTTTCTACTTATTCAGCTGCAAGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTCCAGGACACTTCCAACTTTCTACTTATTCAGCTGCAAGTGTC  450

seq1  TGTGTGTATCTTGGTGTGTATATATTTGTGTATGTCTGTGTGTGTATAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATCTTGGTGTGTATATATTTGTGTATGTCTGTGTGTGTATAAC  500

seq1  TATGTGTATATATATATATATATATATATATATATATATATGTATATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTATATATATATATATATATATATATATATATATATGTATATATA  550

seq1  CATATATATATGTGTGTGTGTATGTATATATATAAACATATATACACA  598
      ||||||||||        | ||   | | ||||| | |||||||||||
seq2  CATATATATA--------TATACACAGAGATATATATATATATACACA  590