BAC Information

Click to search

BAC

Clone NameB6Ng01-173L17
Chromosome3 (Build37)
Map Location 93,064,734 - 93,200,161
singlet/doubletdoublet
Overlap geneEG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn
Upstream geneLOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574
Downstream geneEG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173L17.bB6Ng01-173L17.g
ACCGA002001GA002002
length1,060816
definitionB6Ng01-173L17.b B6Ng01-173L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,199,109 - 93,200,161)(93,064,734 - 93,065,542)
sequence
gaattctggccttgtctctctgtctgactgttgcctgatttctgatgctg
acttccatattgttcataagaatctgattcttgttgactggtttgactag
aataagaatcttttcggaatcttccagactgaccatgactgctttgttgt
ccagatgttttagactggccataatgaaaagcctgctcagggttcttaga
ctgacttaaggcaaagacatatccttgacctttgggctgttcatgactag
atttataacccagtctttgactagaactagaagattcattgtctgactca
gactgatctgagctataatctgtgtcttgtctctcagaatggccatagtg
ggagtccccatggaatgtctctgactgaccacagtgaggatctgtatcat
gtctctcagagtccttatcttgtctctgggactgatcatgttggacattt
tgatgttgtccttcagactgattgtggtgagagttccggcgttctccttc
atacctctgcctatgttgtctgcctgtgctttctgaaaatttatggctcc
gtgttccttcctgatcatgttctttctgggaggaggttctagatccatag
aacttactatctagcttatgatggcaggcttggaccaattggaataccag
caagaggtattcatgaaaatcaacatatccatttctgtctcggtccaagt
gttccagaatggtttccacagtttctggatcatttggtctctgtgagaag
aaaaaaaaatgttctttcatggctgctggattgtatgtcagcattaatgt
tgcaattcactcagtcctccctttctccccagagaaaccattaatgtgaa
atggctttgctctctgaacctcatcccttgggtaaacccaatggggtatt
atcacgaggaagagaccacttgtgtcagcaattaatctgaatcatctgaa
aagttactataatctttttaacatggtatagcctacatgtttattatacc
tctttatcactatgctgtaacattcttagaagtaaaagaagttagttttc
tttatattgg
gaattctcatgtttgtgatttaaaaaaaaaaatcagagaaaaagttagtt
agctttcataggatctggccaacatcctaatttgcttagccctctcacac
ctactaccaacaaatttcatcacctccagataacaggaagaaatctttag
ggaacaaacaatcactgctgagaggatgggtgggttttggtcactcagtg
ggtgatggatttttgtcatcattttagggggtggtcagtcacaagttgtt
aatggtcttggtcagggaggccacaaagtaaaggaggttagattcaggga
tcacttctttttctttctcccatctttcctgctttctcttctatctagtg
ttaggaaaaaggaggaatggggaggggaagcgaaggtataagaataatag
gatgaattgttgaatctgctttcagactaaatatttaaagttatttttgt
tacaacacactatatatgtttcaacttttgcttaaagtattgtacctatg
aaactcattttaaaatgtaatgtaaagttctagtacttgaaaatatgcta
ttgaaagctgtttaggataatttaaaaatgtgaattagtcaatcaatcaa
gcttgtagtcaatttaggtactacttatttacagaaataagctttattta
gcctctgttcaaagtttaaacagatggtaaatacctagatataagccaca
ttttggctatttttaaatactttcgaaaaccttttcagagatctacagaa
tatggaatttaagatggtttttcaaaacatagtacttttctatgaccagt
gactcatatctgcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93199109_93200161
seq2: B6Ng01-173L17.b_45_1104 (reverse)

seq1  CCAATATAAAGAAAACTAACTTCTTTTCCTTCT-AGAATGTTACAGCATA  49
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  CCAATATAAAGAAAACTAACTTCTTTTACTTCTAAGAATGTTACAGCATA  50

seq1  GTGATAAAGAGGTAT-ATAAACATGTAGGCTATACCATG-TAAAAAGA-T  96
      ||||||||||||||| ||||||||||||||||||||||| |||||||| |
seq2  GTGATAAAGAGGTATAATAAACATGTAGGCTATACCATGTTAAAAAGATT  100

seq1  ATAGTAACTTTTTCAGATGATTCAGATTAATTGCTGACACAGTTGTTCTC  146
      |||||||| ||||||||||||||||||||||||||||||||  || ||||
seq2  ATAGTAAC-TTTTCAGATGATTCAGATTAATTGCTGACACAAGTGGTCTC  149

seq1  TTCCTCGTGATAATACCCCATT-GGTTTA-CCAAGGGATGAGGTTCAGAG  194
      |||||||||||||||||||||| |||||| ||||||||||||||||||||
seq2  TTCCTCGTGATAATACCCCATTGGGTTTACCCAAGGGATGAGGTTCAGAG  199

seq1  AGC-AAGCCATTTCACATTAATGGTTTCTCTGGGGAG-AAGGGAGGACTG  242
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGCAAAGCCATTTCACATTAATGGTTTCTCTGGGGAGAAAGGGAGGACTG  249

seq1  AGTGAATTGCAACATTAATGCTGACATACAATCCAGCAGCCATGAAAGAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATTGCAACATTAATGCTGACATACAATCCAGCAGCCATGAAAGAA  299

seq1  CATTTTTTTTTCTTCTCACAGAGACCAAATGATCCAGAAACTGTGGAAAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTTTCTTCTCACAGAGACCAAATGATCCAGAAACTGTGGAAAC  349

seq1  CATTCTGGAACACTTGGACCGAGACAGAAATGGATATGTTGATTTTCATG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGGAACACTTGGACCGAGACAGAAATGGATATGTTGATTTTCATG  399

seq1  AATACCTCTTGCTGGTATTCCAATTGGTCCAAGCCTGCCATCATAAGCTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTCTTGCTGGTATTCCAATTGGTCCAAGCCTGCCATCATAAGCTA  449

seq1  GATAGTAAGTTCTATGGATCTAGAACCTCCTCCCAGAAAGAACATGATCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTAAGTTCTATGGATCTAGAACCTCCTCCCAGAAAGAACATGATCA  499

seq1  GGAAGGAACACGGAGCCATAAATTTTCAGAAAGCACAGGCAGACAACATA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAACACGGAGCCATAAATTTTCAGAAAGCACAGGCAGACAACATA  549

seq1  GGCAGAGGTATGAAGGAGAACGCCGGAACTCTCACCACAATCAGTCTGAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGTATGAAGGAGAACGCCGGAACTCTCACCACAATCAGTCTGAA  599

seq1  GGACAACATCAAAATGTCCAACATGATCAGTCCCAGAGACAAGATAAGGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACATCAAAATGTCCAACATGATCAGTCCCAGAGACAAGATAAGGA  649

seq1  CTCTGAGAGACATGATACAGATCCTCACTGTGGTCAGTCAGAGACATTCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGAGACATGATACAGATCCTCACTGTGGTCAGTCAGAGACATTCC  699

seq1  ATGGGGACTCCCACTATGGCCATTCTGAGAGACAAGACACAGATTATAGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGACTCCCACTATGGCCATTCTGAGAGACAAGACACAGATTATAGC  749

seq1  TCAGATCAGTCTGAGTCAGACAATGAATCTTCTAGTTCTAGTCAAAGACT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCAGTCTGAGTCAGACAATGAATCTTCTAGTTCTAGTCAAAGACT  799

seq1  GGGTTATAAATCTAGTCATGAACAGCCCAAAGGTCAAGGATATGTCTTTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATAAATCTAGTCATGAACAGCCCAAAGGTCAAGGATATGTCTTTG  849

seq1  CCTTAAGTCAGTCTAAGAACCCTGAGCAGGCTTTTCATTATGGCCAGTCT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGTCAGTCTAAGAACCCTGAGCAGGCTTTTCATTATGGCCAGTCT  899

seq1  AAAACATCTGGACAACAAAGCAGTCATGGTCAGTCTGGAAGATTCCGAAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCTGGACAACAAAGCAGTCATGGTCAGTCTGGAAGATTCCGAAA  949

seq1  AGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTCTTATGAAC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTCTTATGAAC  999

seq1  AATATGGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGACAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGACAA  1049

seq1  GGCCAGAATTC  1053
      |||||||||||
seq2  GGCCAGAATTC  1060

seq1: chr3_93064734_93065542
seq2: B6Ng01-173L17.g_70_885

seq1  GAATTCTCATGTTTGTGATTTAAAAAAAAAAATCAGAGAAAAAGTTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGTTTGTGATTTAAAAAAAAAAATCAGAGAAAAAGTTAGTT  50

seq1  AGCTTTCATAGGATCTGGCCAACATCCTAATTTGCTTAGCCCTCTCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCATAGGATCTGGCCAACATCCTAATTTGCTTAGCCCTCTCACAC  100

seq1  CTACTACCAACAAATTTCATCACCTCCAGATAACAGGAAGAAATCTTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACCAACAAATTTCATCACCTCCAGATAACAGGAAGAAATCTTTAG  150

seq1  GGAACAAACAATCACTGCTGAGAGGATGGGTGGGTTTTGGTCACTCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAACAATCACTGCTGAGAGGATGGGTGGGTTTTGGTCACTCAGTG  200

seq1  GGTGATGGATTTTTGTCATCATTTTAGGGGGTGGTCAGTCACAAGTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGGATTTTTGTCATCATTTTAGGGGGTGGTCAGTCACAAGTTGTT  250

seq1  AATGGTCTTGGTCAGGGAGGCCACAAAGTAAAGGAGGTTAGATTCAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCTTGGTCAGGGAGGCCACAAAGTAAAGGAGGTTAGATTCAGGGA  300

seq1  TCACTTCTTTTTCTTTCTCCCATCTTTCCTGCTTTCTCTTCTATCTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTTTTTCTTTCTCCCATCTTTCCTGCTTTCTCTTCTATCTAGTG  350

seq1  TTAGGAAAAAGGAGGAATGGGGAGGGGAAGCGAAGGTATAAGAATAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAAAAGGAGGAATGGGGAGGGGAAGCGAAGGTATAAGAATAATAG  400

seq1  GATGAATTGTTGAATCTGCTTTCAGACTAAATATTTAAAGTTATTTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATTGTTGAATCTGCTTTCAGACTAAATATTTAAAGTTATTTTTGT  450

seq1  TACAACACACTATATATGTTTCAACTTTTGCTTAAAGTATTGTACCTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACACACTATATATGTTTCAACTTTTGCTTAAAGTATTGTACCTATG  500

seq1  AAACTCATTTTAAAATGTAATGTAAAGTTCTAGTACTTGAAAATATGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATTTTAAAATGTAATGTAAAGTTCTAGTACTTGAAAATATGCTA  550

seq1  TTGAAAGCTGTTTAGGATAATTTAAAAATGTGAATTAGTCAATCAATCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCTGTTTAGGATAATTTAAAAATGTGAATTAGTCAATCAATCAA  600

seq1  GCTTGTAGTCAATTTAGGTACTACTTATTTACAGAAATAAGCTTTATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTAGTCAATTTAGGTACTACTTATTTACAGAAATAAGCTTTATTTA  650

seq1  GCCTCTGTTCAAAG-TTAAACAGATGGTAAATACCTAGATATAAGCCACA  699
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCCTCTGTTCAAAGTTTAAACAGATGGTAAATACCTAGATATAAGCCACA  700

seq1  -TTTGGCTATTCAGAAATACTTTCGAAAACC-TTTCAGAGATCTACAGAA  747
       ||||||||||   ||||||||||||||||| ||||||||||||||||||
seq2  TTTTGGCTATTTTTAAATACTTTCGAAAACCTTTTCAGAGATCTACAGAA  750

seq1  TATGGAATTTAAGATG--TTTTCAAAACATAAGACTTTTC-ATGA-CAGT  793
      ||||||||||||||||  |||||||||||||  ||||||| |||| ||||
seq2  TATGGAATTTAAGATGGTTTTTCAAAACATAGTACTTTTCTATGACCAGT  800

seq1  GACTCATATCTGCACC  809
      ||||||||||||||||
seq2  GACTCATATCTGCACC  816