BAC Information

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BAC

Clone NameB6Ng01-174A13
Chromosome3 (Build37)14 (Build37)
Map Location 76,972,922 - 76,973,90892,367,136 - 92,367,653
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFstl5, LOC100041625, LOC100041635
Downstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174A13.bB6Ng01-174A13.g
ACCGA002222GA002223
length965949
definitionB6Ng01-174A13.b B6Ng01-174A13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(76,972,922 - 76,973,908)(92,367,136 - 92,367,653)
sequence
gaattctcgtgtccagttcaatgatttggtgacaaatgataatttatgct
taattgtcaggttgtatgtgtggaaaattgaagtcatacatatttgttaa
gagaaattacagaaagctatgtgagaaatgataaacaataaaacacatca
atttaatataaggaagaaaagtgtttcatgtccttaactttcacgttaat
atgtatcatttttattattaattttttaggattcacatgtattgaatcta
gctgatataaatgtcaaagcctaattttgaaaagtggtttaatcttttac
actattaatatcctgatttttctatctgtttttgttcagaattagatttt
ccttacttactcagcttacattcaaaagataaaataaaatcataaatatt
aatgacatccttcactctcttcatatattcttccaacaacacatttcttt
actttatttctgtggaccacatatgcatccttttagtgaataagtattta
aaaaaaaaaacagtagacaaattgacaaagtaatttcccattggagatct
cttttaaaggtccctattgtctataagtttgaaagatgttcaatgaatat
attagtctcctctcttacattttacctttaataggtttaaaaggttttat
ttggttttcaaattttcctacagaatgacagttgtgtctttagactgact
tcttgtcatgggaagcttcttttctattatacttttacaaacttctacat
atagaagttcactttccagaagttaagtaaaggtaacttttcaaattttt
ctcacaattacacttgattacatttcattaaatgaaagaaactatagttt
ttatatttttcaaataattctgtcgtacttcattccctgttaagtatatt
tgaatttgaaattacttagtttcatgccattacatcgtcacatttcaggt
cttaatttaaaatga

gaattctttggtgaactctcagtttgtacagttattgcagtgcaggtttg
cacaggcagttgaagccagaaaataagatagattagaaaaaaaattgcaa
ttagtttgaggtgagtgagacagaagctaagagaaaccaagagaagccaa
gttgaatcagtcaacttgaagaacagctgagctgaaccagccagccagag
ttcagaactaaactagaaagggtgatattattcatcactgaaccttctag
aagacagttacatctcacaagtaaaaattacttttaaaagtactttacta
tacaaatatctcaaagataacccaatcacaaaggaactcacacaatatgt
actcactgataagtggatattagcccagaaactttggatacacaggatat
aagatacaatttgttaaactcatgaaactcaagaaaaacgaagaccaaag
tgtgaacactttgccccttcctagaaatgggaacaaaacacccatggaag
gagttacagagacaaaatttggagctgtgacgaaaggatggaccatctaa
tgattgccatatccagggatccatcccataatcagcttccaaacgctgac
accattgcatacactagcaagattttgctgaaaggacccagatatagctg
tgtcttgtgagactatgccggggcctagcaaacacagaagtggatgctca
cagtcagctagtggatgggtcacatggcccccaatggaagagttagagaa
agtacccaaggagctaagggggaactgcaaccctatatgtggaacaacaa
tatgaactaaccagtaccccggagctcttgtctctagctgcatatgtatc
aaaagatggcctaatcagccatcactgggaaagagaggccctttggactt
acaaactttatatgcccccagtacagggaacgccaaggccaaaaagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_76972922_76973908
seq2: B6Ng01-174A13.b_46_1010

seq1  GAATTCTCGTGTCCAGTTCAATGATTTGGTGACAAATGATAATTTATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGTGTCCAGTTCAATGATTTGGTGACAAATGATAATTTATGCT  50

seq1  TAATTGTCAGGTTGTATGTGTGGAAAATTGAAGTCATACATATTTGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTCAGGTTGTATGTGTGGAAAATTGAAGTCATACATATTTGTTAA  100

seq1  GAGAAATTACAGAAAGCTATGTGAGAAATGATAAACAATAAAACACATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATTACAGAAAGCTATGTGAGAAATGATAAACAATAAAACACATCA  150

seq1  ATTTAATATAAGGAAGAAAAGTGTTTCATGTCCTTAACTTTCACGTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATATAAGGAAGAAAAGTGTTTCATGTCCTTAACTTTCACGTTAAT  200

seq1  ATGTATCATTTTTATTATTAATTTTTTAGGATTCACATGTATTGAATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCATTTTTATTATTAATTTTTTAGGATTCACATGTATTGAATCTA  250

seq1  GCTGATATAAATGTCAAAGCCTAATTTTGAAAAGTGGTTTAATCTTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATATAAATGTCAAAGCCTAATTTTGAAAAGTGGTTTAATCTTTTAC  300

seq1  ACTATTAATATCCTGATTTTTCTATCTGTTTTTGTTCAGAATTAGATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTAATATCCTGATTTTTCTATCTGTTTTTGTTCAGAATTAGATTTT  350

seq1  CCTTACTTACTCAGCTTACATTCAAAAGATAAAATAAAATCATAAATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTTACTCAGCTTACATTCAAAAGATAAAATAAAATCATAAATATT  400

seq1  AATGACATCCTTCACTCTCTTCATATATTCTTCCAACAACACATTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATCCTTCACTCTCTTCATATATTCTTCCAACAACACATTTCTTT  450

seq1  ACTTTATTTCTGTGGACCACATATGCATCCTTTTAGTGAATAAGTATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTTCTGTGGACCACATATGCATCCTTTTAGTGAATAAGTATTTA  500

seq1  AAAAAAAAAACAGTAGACAAATTGACAAAGTAATTTCCCATTGGAGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACAGTAGACAAATTGACAAAGTAATTTCCCATTGGAGATCT  550

seq1  CTTTTAAAGGTCCCTATTGTCTATAAGTTTGAAAGATGTTCAATGAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAGGTCCCTATTGTCTATAAGTTTGAAAGATGTTCAATGAATAT  600

seq1  ATTAGTCTCCTCTCTTACATTTTACCTTTAATAGGTTTAAAAGGTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCTCCTCTCTTACATTTTACCTTTAATAGGTTTAAAAGGTTTTAT  650

seq1  TTGGTTTTCAAATTTTCCTACAGAATGACAGTTGTGTCTTTAGACTGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTCAAATTTTCCTACAGAATGACAGTTGTGTCTTTAGACTGACT  700

seq1  TCTTGTCATGGGAAGCTTCTTTTCTATTATACTTTTACAAAACTTCTACA  750
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTTGTCATGGGAAGCTTCTTTTCTATTATACTTTTAC-AAACTTCTACA  749

seq1  TATAGAAGTTCACTTTCCAGAAAGTTAAGTAAAAGGTAACTTTTCAAATT  800
      |||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  TATAGAAGTTCACTTTCCAG-AAGTTAAGT-AAAGGTAACTTTTCAAATT  797

seq1  TTTCTTCACAATTACACTTGATTACATTTCATTAAATTGAAAGAAACTAT  850
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTC-TCACAATTACACTTGATTACATTTCATTAAA-TGAAAGAAACTAT  845

seq1  AGTTTTTATATTTTTCAAATAATTCTGTCGTACTTCATTCCCTTGTTAAA  900
      |||||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  AGTTTTTATATTTTTCAAATAATTCTGTCGTACTTCATTCCC-TGTTAA-  893

seq1  GTTATATTTGATATTTGAAATTAACTTAGTTTTTCATGGTCATTTACAAT  950
        ||||||||| |||||||||| ||||||  |||||||  |  |||||  
seq2  -GTATATTTGA-ATTTGAAATT-ACTTAG--TTTCATG--CCATTACA--  934

seq1  CTGTTCACATTTTCAGGTCTTTAATTTTTAAAAATGA  987
       |  ||||| ||||||||| |||||||   |||||||
seq2  -TCGTCACA-TTTCAGGTC-TTAATTT---AAAATGA  965


seq1: chr14_92367136_92367653
seq2: B6Ng01-174A13.g_665_924 (reverse)

seq1  CTTTTGATACATATGCAGCTAGAGTCAAGAGTTCCGGGGTACTGGTTAGT  50
      |||||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  CTTTTGATACATATGCAGCTAGAGACAAGAGCTCCGGGGTACTGGTTAGT  50

seq1  TCATAATGTTGTTCCACCCATAGGGTTGCAGAT-CCCTTTAGCTCCTTGG  99
      ||||| |||||||||||  |||||||||||| | ||| ||||||||||||
seq2  TCATATTGTTGTTCCACATATAGGGTTGCAGTTCCCCCTTAGCTCCTTGG  100

seq1  GTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGCAGGATAAGCATTCT  149
      |||||||||||| ||| ||||||||| ||| ||||      |  ||| | 
seq2  GTACTTTCTCTAACTCTTCCATTGGGGGCCATGTG------ACCCATCC-  143

seq1  ATGTTATATTAGAATATGTTTTGGGGTACATAAGAAATTTTCCCTTGGGT  199
            ||   || | ||              || |   | | |||  ||
seq2  ----ACTAGCTGACTGTG--------------AGCA---TCCACTTCTGT  172

seq1  GGAGTATTATCACCTTCAATATCCCAGTGATGTTCATCTCTCATGCTGAG  249
      |     ||      | | |   ||| |              |||      
seq2  G-----TT------TGCTAGGCCCCGG--------------CAT------  191

seq1  AATAAAAGCTGACACAAGTTACAGCATATTCTGAAACCCAATGAGTATAC  299
            || |  ||||||  |||||                    |||| 
seq2  ------AG-TCTCACAAGACACAGC--------------------TATAT  214

seq1  ATGCTGGGAATTAAAGAAATAAAAAATAATCTTTGCAAGGGTA--CAA--  345
       ||  ||   ||  || ||        |||| |||| || |||  |||  
seq2  CTG--GGTCCTTTCAGCAA--------AATC-TTGCTAGTGTATGCAATG  253

seq1  -GGTCAGAGAGAAATAGAGTGAGAAGTGGTACAATTAATCTAATCCAGGG  394
        |||||                                           
seq2  GTGTCAG-------------------------------------------  260

seq1  AAAGGAAACAAACCAGGGAGAGTTCTACTTAGGGGGTGGGTGGGAGATAA  444
                                                        
seq2  --------------------------------------------------  260

seq1  ATACAGTAAGAGAAGGTAGAAGTTAAAACAATTTGAAAGCTGTCTGATAA  494
                                                        
seq2  --------------------------------------------------  260

seq1  TGCTAGTGTATGCAATGGTGTCAG  518
                              
seq2  ------------------------  260


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