BAC Information

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BAC

Clone NameB6Ng01-174A20
Chromosome3 (Build37)
Map Location 120,762,532 - 120,918,144
singlet/doubletdoublet
Overlap gene2510027J23Rik, LOC435752, Tmem56
Upstream genenone
Downstream geneLOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174A20.bB6Ng01-174A20.g
ACCGA002236GA002237
length940657
definitionB6Ng01-174A20.b B6Ng01-174A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,762,532 - 120,763,469)(120,917,493 - 120,918,144)
sequence
gaattctgctccgcacagcaattgttccattttctgtatttcataacctg
caattttgaagccatgcttggtacacacgcttgtaaaatagtcatatcag
ataaaagcagagggatgctaaactattggaaaataaatcaaattctcagc
aagcagttatatccatcatgtcgcagcgagcgcacgtatagtttaagctc
tgagcgcacagtctatccattgtaatgatttggggtcaggatcctgccac
atgcatttagcattcactaagaagtaaacccaggagtgtagcaggaaaga
gcgcggcgctttagcttttggtccaggaaactgccctccatgcatttgtt
tgagggcaaacactgtgtgtctgtaacagcacagagaagaattaacacat
gcatgtatcttgagcatttctaagacgcttgcatccgacattaccttgct
tgatcttcaagggaacctgggaagaaaaaaataggggaaagcatccacga
gttactaccccagagacaccttcagaaacatatgtgcaaggacatggaag
aaaatatccaaaaatgcaacccacacccaaatcatttccaaactgaggcc
atcctgtgataatgacccattcagtggtacctggccttgcactcagcata
atctcataggacagcagcaagcattctgtgcctttgagtttctcccttta
atataggaacagcatttgtttgtctagtaattgcacaagactttaatgaa
gctctatataaacactttaatgtgaagattatacagataaaggaactaaa
actggcaaatatcattataaatatagcaaatgctttcacaatacagtgtc
ctattaggggagtattaagatatttcacaaggtcttatgggaaaacattt
aaagccatggttttaatttgggtggtagcggggtgggaat

gaattccttggccatcagaggcatgtacctgattacaccttcaccctgga
cttctggcttctagaagatgtatcctcttgagatccttcacctagcactg
ggatcttggttacagccttcccaaatcaacccagttttagtggaggagtc
ataaaggcacagaaggccatgggatttcacggatgaaacgggcagctaca
cataaatcaagctgtacttgcttcatcttccagaaaggcatgggtgctct
gttagaagcagcagccttgagttaccttagacaatgctgtatgaacagac
acatcatagtttcctcttgattgctacaagaaattgaataaacttgcatt
tcctaactccagggctgtaactcagatttcttattgaccggatggttagg
ggtaggaggatctcttggggctgaaaagatgttttgccctcttatttaca
tagacctgactctgtgggagcagtgagcacccttctccatagtcacgtga
cacctcgagtcacggcaacaaaaagtgcccaaccctgctttgcggtgctt
tttggaaaacagaattttcaagctgaacttttagacatggaaagcaaaat
aagagtttggtggtgcactgttaaacatgcaagtgaggtgttgccccatc
tggtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_120762532_120763469
seq2: B6Ng01-174A20.b_48_987

seq1  GAATTCTGCTCCGCACAGCAATTGTTCCATTTTCTGTATTTCATAACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTCCGCACAGCAATTGTTCCATTTTCTGTATTTCATAACCTG  50

seq1  CAATTTTGAAGCCATGCTTGGTACACACGCTTGTAAAATAGTCATATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGAAGCCATGCTTGGTACACACGCTTGTAAAATAGTCATATCAG  100

seq1  ATAAAAGCAGAGGGATGCTAAACTATTGGAAAATAAATCAAATTCTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGCAGAGGGATGCTAAACTATTGGAAAATAAATCAAATTCTCAGC  150

seq1  AAGCAGTTATATCCATCATGTCGCAGCGAGCGCACGTATAGTTTAAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTTATATCCATCATGTCGCAGCGAGCGCACGTATAGTTTAAGCTC  200

seq1  TGAGCGCACAGTCTATCCATTGTAATGATTTGGGGTCAGGATCCTGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGCACAGTCTATCCATTGTAATGATTTGGGGTCAGGATCCTGCCAC  250

seq1  ATGCATTTAGCATTCACTAAGAAGTAAACCCAGGAGTGTAGCAGGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTAGCATTCACTAAGAAGTAAACCCAGGAGTGTAGCAGGAAAGA  300

seq1  GCGCGGCGCTTTAGCTTTTGGTCCAGGAAACTGCCCTCCATGCATTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGGCGCTTTAGCTTTTGGTCCAGGAAACTGCCCTCCATGCATTTGTT  350

seq1  TGAGGGCAAACACTGTGTGTCTGTAACAGCACAGAGAAGAATTAACACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCAAACACTGTGTGTCTGTAACAGCACAGAGAAGAATTAACACAT  400

seq1  GCATGTATCTTGAGCATTTCTAAGACGCTTGCATCCGACATTACCTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTATCTTGAGCATTTCTAAGACGCTTGCATCCGACATTACCTTGCT  450

seq1  TGATCTTCAAGGGAACCTGGGAAGAAAAAAATAGGGGAAAGCATCCACGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTCAAGGGAACCTGGGAAGAAAAAAATAGGGGAAAGCATCCACGA  500

seq1  GTTACTACCCCAGAGACACCTTCAGAAACATATGTGCAAGGACATGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTACCCCAGAGACACCTTCAGAAACATATGTGCAAGGACATGGAAG  550

seq1  AAAATATCCAAAAATGCAACCCACACCCAAATCATTTCCAAACTGAGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCCAAAAATGCAACCCACACCCAAATCATTTCCAAACTGAGGCC  600

seq1  ATCCTGTGATAATGACCCATTCAGTGGTACCTGGCCTTGCACTCAGCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTGATAATGACCCATTCAGTGGTACCTGGCCTTGCACTCAGCATA  650

seq1  ATCTCATAGGACAGCAGCAAGCATTCTGTGCCTTTGAGTTTCTCCCTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATAGGACAGCAGCAAGCATTCTGTGCCTTTGAGTTTCTCCCTTTA  700

seq1  ATATAGGAACAGCATTTGTTTGTCTAGTAATTGCACAAGACTTTAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGGAACAGCATTTGTTTGTCTAGTAATTGCACAAGACTTTAATGAA  750

seq1  GCTCTATATAAACAC-TTAATGTGAAGATTATACAGATAAAGGAACTAAA  799
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTCTATATAAACACTTTAATGTGAAGATTATACAGATAAAGGAACTAAA  800

seq1  ACTGGCAAATATCATTATAAATATAGCAAATGC-TTCACAATACAGTGTC  848
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACTGGCAAATATCATTATAAATATAGCAAATGCTTTCACAATACAGTGTC  850

seq1  CTATTAGGGGAGTATTAAGATATTTCACAAGGTCTTAATGGAAAACATTT  898
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  CTATTAGGGGAGTATTAAGATATTTCACAAGGTCTTATGGGAAAACATTT  900

seq1  AAAGCCATGGGTTTTAATTT-GGTGGTAGCGGGGTGGGATT  938
      |||||||| ||||||||||| |||||||||||||||||| |
seq2  AAAGCCAT-GGTTTTAATTTGGGTGGTAGCGGGGTGGGAAT  940


seq1: chr3_120917493_120918144
seq2: B6Ng01-174A20.g_70_726 (reverse)

seq1  TTCA-CAGAT-GGGCAACACCTCACTTGCATG-TTAACAGTGCACCACC-  46
      |||| ||||| ||||||||||||||||||||| |||||||||||||||| 
seq2  TTCACCAGATGGGGCAACACCTCACTTGCATGTTTAACAGTGCACCACCA  50

seq1  AACTCTTATTTTGCTTTCCATGTCTAAAAGTTCAGCTTG-AAATTCTGTT  95
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACTCTTATTTTGCTTTCCATGTCTAAAAGTTCAGCTTGAAAATTCTGTT  100

seq1  TTCCAAAAAGCACCGCAAAGCAGGGTTGGGCACTTTTTGTTGCCGTGACT  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAAAGCACCGCAAAGCAGGGTTGGGCACTTTTTGTTGCCGTGACT  150

seq1  CGAGGTGTCACGTGACTATGGAGAAGGGTGCTCACTGCTCCCACAGAGTC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTGTCACGTGACTATGGAGAAGGGTGCTCACTGCTCCCACAGAGTC  200

seq1  AGGTCTATGTAAATAAGAGGGCAAAACATCTTTTCAGCCCCAAGAGATCC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTATGTAAATAAGAGGGCAAAACATCTTTTCAGCCCCAAGAGATCC  250

seq1  TCCTACCCCTAACCATCCGGTCAATAAGAAATCTGAGTTACAGCCCTGGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCCCTAACCATCCGGTCAATAAGAAATCTGAGTTACAGCCCTGGA  300

seq1  GTTAGGAAATGCAAGTTTATTCAATTTCTTGTAGCAATCAAGAGGAAACT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGAAATGCAAGTTTATTCAATTTCTTGTAGCAATCAAGAGGAAACT  350

seq1  ATGATGTGTCTGTTCATACAGCATTGTCTAAGGTAACTCAAGGCTGCTGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTGTCTGTTCATACAGCATTGTCTAAGGTAACTCAAGGCTGCTGC  400

seq1  TTCTAACAGAGCACCCATGCCTTTCTGGAAGATGAAGCAAGTACAGCTTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACAGAGCACCCATGCCTTTCTGGAAGATGAAGCAAGTACAGCTTG  450

seq1  ATTTATGTGTAGCTGCCCGTTTCATCCGTGAAATCCCATGGCCTTCTGTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTGTAGCTGCCCGTTTCATCCGTGAAATCCCATGGCCTTCTGTG  500

seq1  CCTTTATGACTCCTCCACTAAAACTGGGTTGATTTGGGAAGGCTGTAACC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATGACTCCTCCACTAAAACTGGGTTGATTTGGGAAGGCTGTAACC  550

seq1  AAGATCCCAGTGCTAGGTGAAGGATCTCAAGAGGATACATCTTCTAGAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCCAGTGCTAGGTGAAGGATCTCAAGAGGATACATCTTCTAGAAG  600

seq1  CCAGAAGTCCAGGGTGAAGGTGTAATCAGGTACATGCCTCTGATGGCCAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTCCAGGGTGAAGGTGTAATCAGGTACATGCCTCTGATGGCCAA  650

seq1  GGAATTC  652
      |||||||
seq2  GGAATTC  657


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