BAC Information

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BAC

Clone NameB6Ng01-174D10
Chromosome3 (Build37)X (Build37)
Map Location 66,658,124 - 66,658,954111,431,961 - 111,432,405
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCcnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
Downstream geneLOC625115, Shox2, Rsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174D10.bB6Ng01-174D10.g
ACCGA002357GA002358
length833489
definitionB6Ng01-174D10.b B6Ng01-174D10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,658,124 - 66,658,954)(111,431,961 - 111,432,405)
sequence
gaattcaattgtttaaaaagaaaagatatttagatatcccttatagaatg
gcgttcatattagatgattttgctttgaaacatggtaaataagttggagg
gaagcataaaacactctgcagggccatgactcataaatctataacattac
ttttattaatttggaatcttcatgaggagagatgaagaaaatactccttg
aagtgatttccacattatgctgattttgtgatcatctgtgtactaagaga
ccacccaattcatctctgttgtaacgaacaccagattttgtcctgggttt
gaaatctctggctatgacatgcaacatatttaaaaaatctgtttgattga
tagtttaatcattgttccctattacatcagcagccaagcctagtattcca
attttgaaggattgttttgcctctgtccctgtgtcacacaaagtacttgt
ggcttgccaatggcagatctgattgcagctttatagaattcagacgtagt
tgaaagtttaaattttctgttctgttcttgtgtttatcttttagacagca
catgatttcgattcctcctgttataaaataaaatcagcttaccaatcatc
ttctgtcctgtgttcttgtctcttcttttctttcttccatatttatatgg
gtgtcacattgtatccttttgaactggtaatgggacaagccagtcagcac
ttgatcgttttgaacccaaccaggcaaacatacaatcaggtttcctcctg
ggtgcagttacaaatcctttcttttggtccggtgtccttggttttctatg
cagttcaatgaggaggctagtgtatatgacttt
tcacctgaggaataccgaatggcagagaagcacctgaataaatgttcaac
atccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacc
tcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgc
tggcgaggatgtggagaaagaggaacactcctccattgttggtgggattg
caggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaat
tggacatagtactaccggaggatccagcaatacctctcctgggcatatat
ccagaagaagccccaactggtaagaaggacacatgctccactatgttcat
agcagccttatttataatagccagaaactggaaagaacccatatgcccct
caacagaggaatggatttttaaagtgtggtacatctacacaatggagtac
tactcagctattataaagaatgaatttatgaaattccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_66658124_66658954
seq2: B6Ng01-174D10.b_38_870 (reverse)

seq1  AAAGTCATATACACTTGCCTCCTCATTGAACTGCATAGAAAACCAAGGAC  50
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAGTCATATACACTAGCCTCCTCATTGAACTGCATAGAAAACCAAGGAC  50

seq1  ACC-GACCAAAAGAAAGGATTTGTAACTGCACCCAGGAGGAAACCTGATT  99
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGACCAAAAGAAAGGATTTGTAACTGCACCCAGGAGGAAACCTGATT  100

seq1  GTATGTTTGCCTGGTTGGGTTCAAAACGATCAAGTGCTGACTGGCTTGTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTGCCTGGTTGGGTTCAAAACGATCAAGTGCTGACTGGCTTGTC  150

seq1  CCATTACCAGTTCAAAAGGATACAATGTGACACCCATATAAATATGGAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACCAGTTCAAAAGGATACAATGTGACACCCATATAAATATGGAAG  200

seq1  AAAGAAAAGAAGAGACAAGAACACAGGACAGAAGATGATTGGTAAGCTGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGAAGAGACAAGAACACAGGACAGAAGATGATTGGTAAGCTGA  250

seq1  TTTTATTTTATAACAGGAGGAATCGAAATCATGTGCTGTCTAAAAGATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTATAACAGGAGGAATCGAAATCATGTGCTGTCTAAAAGATAA  300

seq1  ACACAAGAACAGAACAGAAAATTTAAACTTTCAACTACGTCTGAATTCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGAACAGAACAGAAAATTTAAACTTTCAACTACGTCTGAATTCTA  350

seq1  TAAAGCTGCAATCAGATCTGCCATTGGCAAGCCACAAGTACTTTGTGTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGCAATCAGATCTGCCATTGGCAAGCCACAAGTACTTTGTGTGA  400

seq1  CACAGGGACAGAGGCAAAACAATCCTTCAAAATTGGAATACTAGGCTTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGACAGAGGCAAAACAATCCTTCAAAATTGGAATACTAGGCTTGG  450

seq1  CTGCTGATGTAATAGGGAACAATGATTAAACTATCAATCAAACAGATTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGATGTAATAGGGAACAATGATTAAACTATCAATCAAACAGATTTT  500

seq1  TTAAATATGTTGCATGTCATAGCCAGAGATTTCAAACCCAGGACAAAATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATGTTGCATGTCATAGCCAGAGATTTCAAACCCAGGACAAAATC  550

seq1  TGGTGTTCGTTACAACAGAGATGAATTGGGTGGTCTCTTAGTACACAGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTCGTTACAACAGAGATGAATTGGGTGGTCTCTTAGTACACAGAT  600

seq1  GATCACAAAATCAGCATAATGTGGAAATCACTTCAAGGAGTATTTTCTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACAAAATCAGCATAATGTGGAAATCACTTCAAGGAGTATTTTCTTC  650

seq1  ATCTCTCCTCATGAAGATTCCAAATTAATAAAAGTAATGTTATAGATTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCTCATGAAGATTCCAAATTAATAAAAGTAATGTTATAGATTTA  700

seq1  TGAGTCATGGCCCTGCAGAGTGTTTTATGCTTCCCTCCAACTTATTTACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCATGGCCCTGCAGAGTGTTTTATGCTTCCCTCCAACTTATTTACC  750

seq1  ATGTTTCAAAGCAAAATCATCTAATATGAACGCCATTCTATAA-CTATAT  798
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  ATGTTTCAAAGCAAAATCATCTAATATGAACGCCATTCTATAAGGGATAT  800

seq1  CTAAATATCTTTTCTTTTTAAACAATTGAATTC  831
      |||||||||||||||||||||||||||||||||
seq2  CTAAATATCTTTTCTTTTTAAACAATTGAATTC  833

seq1: chrX_111431961_111432405
seq2: B6Ng01-174D10.g_118_564 (reverse)

seq1  TAGGAATTTCATAAATTCATTCTTTTTAATAGCTCAGTAGTACTCCATTG  50
      ||||||||||||||||||||||||| |||||||| |||||||||||||||
seq2  TAGGAATTTCATAAATTCATTCTTTATAATAGCTGAGTAGTACTCCATTG  50

seq1  TGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTG  100
      |||| |||||||||| |||    |||||||||||||||||||||||| ||
seq2  TGTAGATGTACCACACTTTAAAAATCCATTCCTCTGTTGAGGGGCATATG  100

seq1  GGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGT  150
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTTCCAGTTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGT  150

seq1  GGAGCATGTGTCCTTCTTACCGGTTGGGACATCTTCTGGATATATGCCCA  200
      ||||||||||||||||||||| |||||| | |||||||||||||||||||
seq2  GGAGCATGTGTCCTTCTTACCAGTTGGGGCTTCTTCTGGATATATGCCCA  200

seq1  GGAAAGGTATTGCTGGATCTTCCGGTAGTACTATGTCCAATTTTCTAAGG  250
      ||| ||||||||||||||| |||||||||||||||||||||||||| |||
seq2  GGAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGAGG  250

seq1  AACCGCCAGACTGATTTCCAGAGTGATTGTACAAGCTTGTAATCCCACCA  300
      ||||||||||||||||||||||||| |||||||||| || ||||||||||
seq2  AACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCA  300

seq1  ACAATGGAGGTGTGTTC--CTTTCTCCACATCCTCACCAGCATCTGCTGT  348
      |||||||||| ||||||  |||||||||||||||| ||||||||||||||
seq2  ACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGT  350

seq1  CACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTC  398
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CACCTGAATTTTTGATCTTAGCCATTCTCACTGGTGTGAGGTGGAATCTC  400

seq1  AGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACA  445
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACA  447