BAC Information

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BAC

Clone NameB6Ng01-174O11
Chromosome3 (Build37)
Map Location 49,137,189 - 49,300,245
singlet/doubletdoublet
Overlap gene4932443G14, LOC545519, LOC676568, LOC666247
Upstream gene1700018B24Rik, LOC100039404, EG666230
Downstream geneLOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174O11.bB6Ng01-174O11.g
ACCGA002856GA002857
length1,142965
definitionB6Ng01-174O11.b B6Ng01-174O11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,299,101 - 49,300,245)(49,137,189 - 49,138,143)
sequence
gaattctctgttcttggatgaatggaagaatctccatgagaagatattca
tgtatacgtttttttcagacaggattagatagccctgttgcttacctgca
ggggccctcatctgcatacctccctttagaaagtaaatcctcaggctttg
aagcctggatacaggtaaaaatcactccagcagcaaattgtttgacagca
gcatggcagcatcatcagcctttggtctcttagactgtttcctttcattc
tttggctttgattgggcatcagctttatagttctatttcacctgtgctgc
actcttcctaagcactttctgagctaagttctggtggtttgaataaaaga
aagcagtgggcatactcaagctggtctgcccattaaaaagaagagcagca
gctgcactctttgcatctgggtgtgttatgatccacagtcatccttccac
cttgctgtcttttccatattttcttttggctttggttttctctcccaaaa
cattcaaacagggatcatcttttcattcataaatgaaggatttgcctgta
atcactatatactttcttaaacttatagttctttaaaagcaaagtaattt
cccccatatctcatgagtaggctcagtgtatcaaaatactaactgttctt
gaggtttgattctcagtacctgcatggttgcttacaaccgtttgtaactg
tattttatctgacaccttcttctggttcctgtacatatgttggacacata
aaatcacctagataaacacatgtccacaacaataaatatgttgctattat
aaaatgatattaacaacttttaatttgaagagattagaaaaatctctgcc
cactgttttgtttgttgagtaagagtttgctaatagccttgcttgaccgg
gtattatatatgtcttgcaaactgggccctgcctctatgtgcagagtctg
caatttagaggtatatgtcaatatacctatatcaaaattgtttatgtcaa
taaagaattatttgcagtgtcctttgggaagaaagctgctttatagagta
agaggaaaggaatggaagtcatggtggaaagaagggaagaagatgtatgt
cattctctccaaatacagtatacagatactgctcataaaata

gaattccatctaccctggcttagactgtgcctgagtggtaaaacagagga
gccctcctctgccctggggtaagaagaactgggtatttcttcaagtgatt
cccactacaatgcaaacaaaacgaacagaaatacttgattctcttcctag
gaggaagaagaggtttaagataaaatgcatcatcccactgaaacacctgt
gggtcttggatgattttgacctactcggaaaaggcaaaatgtgtacttgc
aaaaccctttacctgtattggcccaccagaaattgtattgccaaatttcg
gtaagacatacagtttggatctgtattcacaggaggatagctatcgaaat
tgtggggcaacataatgtttcataattcacagattaaacgaattaaccag
aatggttgcaaaataagaaatccattttagtctgattgtattcaggttcc
atactccaattttctccgtctatgatgaccccaatttgtttatactttcc
acaacatacatttcacatgtaagcatatgccctaatttttttatccataa
tgttcattaggattctaaatgattcttgaggtagaatggaggtacattgt
cttctaagaaggatgtggacaaaatgaggacttagtgtattctccatatt
ctttcccccataatgtctggtattatctaggttttgaaaatacacaaatt
gatttctctccagggaatactacatagtgtacttatattttgtccatttg
accaatatccccaatactccctagttaatttccctaaaaaagatttattt
gtacagatttaaaaatagttactcatagaatactcaagtatttgaatatc
tgtattagcagaatattcactggttgtgtaatggtcaactgataaggcta
aagatcaagggatactaagatgaatagattccacaccatagcttattttt
gatatggctttagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49299101_49300245
seq2: B6Ng01-174O11.b_39_1180 (reverse)

seq1  TATTTTAT-AGCAGTAT-TGTATACTTGTATTTGTGAGAG-ATGACAATC  47
      |||||||| |||||||| ||||||| |||||||| ||||| ||||||  |
seq2  TATTTTATGAGCAGTATCTGTATAC-TGTATTTG-GAGAGAATGACATAC  48

seq1  ATCTTTCTTCCCCTCTTTTCCAACCATGAACCTTTCCTTTCCCTTCCTCT  97
      ||| |||||||| |||||  | |||||||    |||| |||| |||||| 
seq2  ATC-TTCTTCCCTTCTTT--CCACCATGA---CTTCCATTCCTTTCCTC-  91

seq1  TTACTCTAATAAAGCAAGCCTTTCTT-CCAAAGGACACTGCAAATAA-TC  145
      ||||||| ||||||||   ||||||| |||||||||||||||||||| ||
seq2  TTACTCT-ATAAAGCA--GCTTTCTTCCCAAAGGACACTGCAAATAATTC  138

seq1  TTTATTGACATAAACAATTTTGATATAGGTATATTGACATATACCTCT-A  194
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTATTGACATAAACAATTTTGATATAGGTATATTGACATATACCTCTAA  188

seq1  ATTGCAGAACTCTGCACATAGAGGCAGGG-CCAGTTTGCAAGACATATAT  243
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTGCAG-ACTCTGCACATAGAGGCAGGGCCCAGTTTGCAAGACATATAT  237

seq1  AATACCCGGTCAAGCAAGGCTATTAGCAAACTCTTACTCAACAAACAAAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCGGTCAAGCAAGGCTATTAGCAAACTCTTACTCAACAAACAAAA  287

seq1  CAGTGGGCAGAGATTTTTCT-ATCTCTTCAA--TTAAAGTTGTTAATATC  340
      |||||||||||||||||||| ||||||||||  | |||||||||||||||
seq2  CAGTGGGCAGAGATTTTTCTAATCTCTTCAAATTAAAAGTTGTTAATATC  337

seq1  ATTTTATAATAGCAACATATTTATTGTTGTGGACATGTGTTTATCTAGGT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAATAGCAACATATTTATTGTTGTGGACATGTGTTTATCTAGGT  387

seq1  GATTTTATGTGTCCAACATATGTACAGGAACCAGAAGAAGGTGTCAGATA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATGTGTCCAACATATGTACAGGAACCAGAAGAAGGTGTCAGATA  437

seq1  AAATACAGTTACAAACGGTTGTAAGCAACCATGCAGGTACTGAGAATCAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGTTACAAACGGTTGTAAGCAACCATGCAGGTACTGAGAATCAA  487

seq1  ACCTCAAGAACAGTTAGTATTTTGATACACTGAGCCTACTCATGAGATAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAAGAACAGTTAGTATTTTGATACACTGAGCCTACTCATGAGATAT  537

seq1  GGGGGAAATTACTTTGCTTTTAAAGAACTATAAGTTTAAGAAAGTATATA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAATTACTTTGCTTTTAAAGAACTATAAGTTTAAGAAAGTATATA  587

seq1  GTGATTACAGGCAAATCCTTCATTTATGAATGAAAAGATGATCCCTGTTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTACAGGCAAATCCTTCATTTATGAATGAAAAGATGATCCCTGTTT  637

seq1  GAATGTTTTGGGAGAGAAAACCAAAGCCAAAAGAAAATATGGAAAAGACA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTTGGGAGAGAAAACCAAAGCCAAAAGAAAATATGGAAAAGACA  687

seq1  GCAAGGTGGAAGGATGACTGTGGATCATAACACACCCAGATGCAAAGAGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTGGAAGGATGACTGTGGATCATAACACACCCAGATGCAAAGAGT  737

seq1  GCAGCTGCTGCTCTTCTTTTTAATGGGCAGACCAGCTTGAGTATGCCCAC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGCTGCTCTTCTTTTTAATGGGCAGACCAGCTTGAGTATGCCCAC  787

seq1  TGCTTTCTTTTATTCAAACCACCAGAACTTAGCTCAGAAAGTGCTTAGGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTTTTATTCAAACCACCAGAACTTAGCTCAGAAAGTGCTTAGGA  837

seq1  AGAGTGCAGCACAGGTGAAATAGAACTATAAAGCTGATGCCCAATCAAAG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCAGCACAGGTGAAATAGAACTATAAAGCTGATGCCCAATCAAAG  887

seq1  CCAAAGAATGAAAGGAAACAGTCTAAGAGACCAAAGGCTGATGATGCTGC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAATGAAAGGAAACAGTCTAAGAGACCAAAGGCTGATGATGCTGC  937

seq1  CATGCTGCTGTCAAACAATTTGCTGCTGGAGTGATTTTTACCTGTATCCA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGCTGTCAAACAATTTGCTGCTGGAGTGATTTTTACCTGTATCCA  987

seq1  GGCTTCAAAGCCTGAGGATTTACTTTCTAAAGGGAGGTATGCAGATGAGG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAAAGCCTGAGGATTTACTTTCTAAAGGGAGGTATGCAGATGAGG  1037

seq1  GCCCCTGCAGGTAAGCAACAGGGCTATCTAATCCTGTCTGAAAAAAACGT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGCAGGTAAGCAACAGGGCTATCTAATCCTGTCTGAAAAAAACGT  1087

seq1  ATACATGAATATCTTCTCATGGAGATTCTTCCATTCATCCAAGAACAGAG  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGAATATCTTCTCATGGAGATTCTTCCATTCATCCAAGAACAGAG  1137

seq1  AATTC  1145
      |||||
seq2  AATTC  1142


seq1: chr3_49137189_49138143
seq2: B6Ng01-174O11.g_69_1033

seq1  GAATTCCATCTACCCTGGCTTAGACTGTGCCTGAGTGGTAAAACAGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTACCCTGGCTTAGACTGTGCCTGAGTGGTAAAACAGAGGA  50

seq1  GCCCTCCTCTGCCCTGGGGTAAGAAGAACTGGGTATTTCTTCAAGTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCTCTGCCCTGGGGTAAGAAGAACTGGGTATTTCTTCAAGTGATT  100

seq1  CCCACTACAATGCAAACAAAACGAACAGAAATACTTGATTCTCTTCCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTACAATGCAAACAAAACGAACAGAAATACTTGATTCTCTTCCTAG  150

seq1  GAGGAAGAAGAGGTTTAAGATAAAATGCATCATCCCACTGAAACACCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAAGAGGTTTAAGATAAAATGCATCATCCCACTGAAACACCTGT  200

seq1  GGGTCTTGGATGATTTTGACCTACTCGGAAAAGGCAAAATGTGTACTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTGGATGATTTTGACCTACTCGGAAAAGGCAAAATGTGTACTTGC  250

seq1  AAAACCCTTTACCTGTATTGGCCCACCAGAAATTGTATTGCCAAATTTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTTTACCTGTATTGGCCCACCAGAAATTGTATTGCCAAATTTCG  300

seq1  GTAAGACATACAGTTTGGATCTGTATTCACAGGAGGATAGCTATCGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACATACAGTTTGGATCTGTATTCACAGGAGGATAGCTATCGAAAT  350

seq1  TGTGGGGCAACATAATGTTTCATAATTCACAGATTAAACGAATTAACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGCAACATAATGTTTCATAATTCACAGATTAAACGAATTAACCAG  400

seq1  AATGGTTGCAAAATAAGAAATCCATTTTAGTCTGATTGTATTCAGGTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTGCAAAATAAGAAATCCATTTTAGTCTGATTGTATTCAGGTTCC  450

seq1  ATACTCCAATTTTCTCCGTCTATGATGACCCCAATTTGTTTATACTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCAATTTTCTCCGTCTATGATGACCCCAATTTGTTTATACTTTCC  500

seq1  ACAACATACATTTCACATGTAAGCATATGCCCTAATTTTTTTATCCATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATACATTTCACATGTAAGCATATGCCCTAATTTTTTTATCCATAA  550

seq1  TGTTCATTAGGATTCTAAATGATTCTTGAGGTAGAATGGAGGTACATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTAGGATTCTAAATGATTCTTGAGGTAGAATGGAGGTACATTGT  600

seq1  CTTCTAAGAAGGATGTGGACAAAATGAGGACTTAGTGTATTCTCCATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAGAAGGATGTGGACAAAATGAGGACTTAGTGTATTCTCCATATT  650

seq1  CTTTCCCCCATAATGTCTGGTATTATCTAGGTTTTGAAAATACACAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCCATAATGTCTGGTATTATCTAGGTTTTGAAAATACACAAATT  700

seq1  GATTTCTCTCCA-GGAATACTACATAGTGTACTTATA-TTTGTCCATTTG  748
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  GATTTCTCTCCAGGGAATACTACATAGTGTACTTATATTTTGTCCATTTG  750

seq1  ACCAATATCCCCAATACTCCCTAGTTAATTTCCCTAAAAAAGATTTAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACCAATATCCCCAATACTCCCTAGTTAATTTCCCTAAAAAAGATTTATTT  800

seq1  GTACAGA-TTAAAAATAGTTACTCATAGAATACTCAAGTATTTGAATATC  847
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGATTTAAAAATAGTTACTCATAGAATACTCAAGTATTTGAATATC  850

seq1  TGTA-TAGCAGAATA-TCACTGG-TGTGTAATGGTCAACTGATAAGGCTA  894
      |||| |||||||||| ||||||| ||||||||||||||||||||||||||
seq2  TGTATTAGCAGAATATTCACTGGTTGTGTAATGGTCAACTGATAAGGCTA  900

seq1  AAGATCAAGGGATACTAAGATG-ATAGA-TACACACATTAGCTTA-TTTT  941
      |||||||||||||||||||||| ||||| | |||||  ||||||| ||||
seq2  AAGATCAAGGGATACTAAGATGAATAGATTCCACACCATAGCTTATTTTT  950

seq1  GATAT-GCCTTAGCT  955
      ||||| || ||||||
seq2  GATATGGCTTTAGCT  965


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