BAC Information

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BAC

Clone NameB6Ng01-175H01
Chromosome3 (Build37)
Map Location 72,303,304 - 72,304,336
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175H01.bB6Ng01-175H01.g
ACCGA003245GA003246
length1,2031,036
definitionB6Ng01-175H01.b B6Ng01-175H01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgaagacagaaacagtggaatcaaataatgaaaagtcttcaa
tacataaatatataaagtcactaatgaaatctcaaactaagataaacttg
taataaaaagtctagaaaatcaaagaacttcaaaggtaaaccttaccaat
aaaggataaggcatgcaaaaaagaatctcaggctttgaaagcatggaaaa
ataaatagatgcatcaaacaaagaaaatattaattaaaaaaattccaggt
acaagacatctaggatatcaaagacactatgaaaaagaaactataaatag
agaaaggggagggagaaccagaacaatgttacagcaaatattttcaacaa
aacaatagcgaaaaaaatttctaacctaaagagatagatgcccacaagaa
aggaaattcctcatgatacataggaatcaatgtacacaacaaagaaagaa
tattataaactgcaagagaaaaggactaaataacatatatgatcacacct
tcttatgaaggctctgtaaagtccaagtgcctgggtgaaagttctacaga
ttttatgtgaccacagatgccagcccaatgtaatataaccagcaaaacta
tcaatcacaaaggacagagaaagaaatacattccataagtaaaaccaatt
tcaagcactatttacacattgtactctaaaaaaaaaatactaaaagcaaa
gttgcagctaataatatcataaattaaatgtatctaggagacatttgaag
aagatttcaccaagcacaaaagaatataacctaatctcagctgttcatga
aactttctccaaaactgaccacatattacaacagaaaatctaatgagata
caagaatattaaattaatagtcttagtatcatttgaccccccacacatta
aagctgaatatatacaacaaaggacagtctattttcatatatctattcaa
tgtattacttgaaatcataactagagtaaaaagaaaactgaagattcaaa
ggtgaatacaaactcatgaaacatcactcaccatattaaacattctccag
gtgtctctacaactgaataagcagattcaacaaaatatcatgatataaaa
taattacacaaaaattaagttagccctcagaatattccgattgatgattg
taattgaagaaaaataacggaccaaaatattccacaattagggccccttc
aga

gaattcataaataattggaatgagagaaatacagagatctgagttattta
tttatttgacttagaaatctgactttgaataacaactctttccagaacaa
ggtactgagaatactgttaatactgagaccagaagaatattgtctctccc
catccctaacacagctaaagagatatgagaatcaagatgaagtattacct
taaattcacagtagtaaacatatagtaggatttcactagaaatatattaa
gtagatataaaaatgtttaaagtgaataaaagcaacgaatcattgaaaat
atgcaaaatatagagaaattcttagctagtctttgaaaaagagaatgaat
attcctattactaaaattagagatgaaaatgaacataggaaaagtgacac
tgtgaacataagatcagtagaagtgattccaaactataagcttcattata
ctatagccctgaagaactaagcaaattcttggacaaaacaatacacaaaa
ataatccataagagtagaaataaccttatgtcaaaagccatttctatgag
tgtgtaaagggcatttgataaattccaaaattttctataaattatcaaat
tatcaaatgtatggagcctactgtagtatactggaagctatttatcagct
aaaagttaatattatactaacacgagaaatttgaaaaccttcttagaaca
tgaataacacaagtactgttacttttgcttttactcacacagtattcttt
tccaggatagagcagatctaaactgacaagagctcactgaagtatactgc
ttggggatgccataatttcatctgtagaaaattccaaaaccgtcactgag
atctattagacctaataaatacatttcacgattttatcattttcaagctt
tgatataagaacaaatgtactgtctgttttttatcagtataatttatagt
atgtcctctctctggaggatgatatattaagtgggattttaggagcagag
atttgaaatagctactctttttactacacatattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_72303304_72304336
seq2: B6Ng01-175H01.g_65_1100 (reverse)

seq1  TAAATATGTGTAGTAAAAAGAGTAGCTATTTCAAATCTCTGCTCCTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGTGTAGTAAAAAGAGTAGCTATTTCAAATCTCTGCTCCTAAAA  50

seq1  T-CCACTTAATATATCATCCT-CAGAGAGAGGACATACTATAAATTATAC  98
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCCCACTTAATATATCATCCTCCAGAGAGAGGACATACTATAAATTATAC  100

seq1  TGAT-AAAAACAGACAGTACATTTGTTCTTATATCAAAGCTTGAAAATGA  147
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAAACAGACAGTACATTTGTTCTTATATCAAAGCTTGAAAATGA  150

seq1  TAAAATCGTGAAATGTATTTATTAGGTCTAATAGATCTCAGTGACGGTTT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCGTGAAATGTATTTATTAGGTCTAATAGATCTCAGTGACGGTTT  200

seq1  TGGAATTTTCTACAGATGAAATTATGGCATCCCCAAGCAGTATACTTCAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTTCTACAGATGAAATTATGGCATCCCCAAGCAGTATACTTCAG  250

seq1  TGAGCTCTTGTCAGTTTAGATCTGCTCTATCCTGGAAAAGAATACTGTGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCTTGTCAGTTTAGATCTGCTCTATCCTGGAAAAGAATACTGTGT  300

seq1  GAGTAAAAGCAAAAGTAACAGTACTTGTGTTATTCATGTTCTAAGAAGGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAAGCAAAAGTAACAGTACTTGTGTTATTCATGTTCTAAGAAGGT  350

seq1  TTTCAAATTTCTCGTGTTAGTATAATATTAACTTTTAGCTGATAAATAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATTTCTCGTGTTAGTATAATATTAACTTTTAGCTGATAAATAGC  400

seq1  TTCCAGTATACTACAGTAGGCTCCATACATTTGATAATTTGATAATTTAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTATACTACAGTAGGCTCCATACATTTGATAATTTGATAATTTAT  450

seq1  AGAAAATTTTGGAATTTATCAAATGCCCTTTACACACTCATAGAAATGGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTTTGGAATTTATCAAATGCCCTTTACACACTCATAGAAATGGC  500

seq1  TTTTGACATAAGGTTATTTCTACTCTTATGGATTATTTTTGTGTATTGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACATAAGGTTATTTCTACTCTTATGGATTATTTTTGTGTATTGTT  550

seq1  TTGTCCAAGAATTTGCTTAGTTCTTCAGGGCTATAGTATAATGAAGCTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCAAGAATTTGCTTAGTTCTTCAGGGCTATAGTATAATGAAGCTTA  600

seq1  TAGTTTGGAATCACTTCTACTGATCTTATGTTCACAGTGTCACTTTTCCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGGAATCACTTCTACTGATCTTATGTTCACAGTGTCACTTTTCCT  650

seq1  ATGTTCATTTTCATCTCTAATTTTAGTAATAGGAATATTCATTCTCTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATTTTCATCTCTAATTTTAGTAATAGGAATATTCATTCTCTTTT  700

seq1  TCAAAGACTAGCTAAGAATTTCTCTATATTTTGCATATTTTCAATGATTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACTAGCTAAGAATTTCTCTATATTTTGCATATTTTCAATGATTC  750

seq1  GTTGCTTTTATTCACTTTAAACATTTTTATATCTACTTAATATATTTCTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTTATTCACTTTAAACATTTTTATATCTACTTAATATATTTCTA  800

seq1  GTGAAATCCTACTATATGTTTACTACTGTGAATTTAAGGTAATACTTCAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATCCTACTATATGTTTACTACTGTGAATTTAAGGTAATACTTCAT  850

seq1  CTTGATTCTCATATCTCTTTAGCTGTGTTAGGGATGGGGAGAGACAATAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTCTCATATCTCTTTAGCTGTGTTAGGGATGGGGAGAGACAATAT  900

seq1  TCTTCTGGTCTCAGTATTAACAGTATTCTCAGTACCTTGTTCTGGAAAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGTCTCAGTATTAACAGTATTCTCAGTACCTTGTTCTGGAAAGA  950

seq1  GTTGTTATTCAAAGTCAGATTTCTAAGTCAAATAAATAAATAACTCAGAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTATTCAAAGTCAGATTTCTAAGTCAAATAAATAAATAACTCAGAT  1000

seq1  CTCTGTATTTCTCTCATTCCAATTATTTATGAATTC  1033
      ||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATTTCTCTCATTCCAATTATTTATGAATTC  1036


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