BAC Information

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BAC

Clone NameB6Ng01-175L12
Chromosome3 (Build37)
Map Location 25,326,993 - 25,328,040
singlet/doubletsinglet
Overlap genenone
Upstream geneEG635702, LOC100039592
Downstream geneNlgn1, LOC621017, LOC229152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175L12.bB6Ng01-175L12.g
ACCGA003449GA003450
length1,2061,057
definitionB6Ng01-175L12.b B6Ng01-175L12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgctaatgacacacgtgtattggcccaccttacatttcgtag
ttgagccacatttgtcaggactccatagagagaaacacaccacaaacctt
gtggtggtggcctcagctttttgcctcttaagctgaggctgatttagagt
gatgtcagctgagacagatgcatgagctcaggcaagacctggggaggaca
tgtgatgtttggatggtataaataggacagttatggaggttgggctaggc
ttgcttatagagctagctgtgcaaagcttctggttctctcgtcttagctg
atcttgacttccttgagagaggctgagaacttctcctggaatttctgttg
gcccttgtccatcctgctgacttgagcagaggttgaggcctggctccctt
tgctaggtcataccactgctgtttctaatggatcgatgagctgccgtggc
ttacctgtgaactgaactgccaattcccagacaacacagatgtgagttct
tccaaagaacttttctaaacaagtccacgtctcctgtatcctttcttttc
cactatttttggtgggtcctgatttcaagggatggtaaaacatttaaaaa
accatcattaagaacaggagtttgaaaaaaattaaacatgttatttttct
cccatgcctttaaacacagggccttggatagcacttggctcttgtttcca
atacaattttatttgaaatgaaaagtaggatagatgtgttctgaatgtaa
tcaagggacagtgctcctcaccccatacaacatcacaaatatataacgta
gacacagtatatgaagagtgatacactcagagcaaagttccagtcctatt
ctttgtaggttgcatgttcaagggattgtgtctctttttttgaaatagac
tattacagtgctaccccaggagctttaattgacagttgggcttctctaac
atgaagaacacattatcaactaccatcaatagtcccttttaaaattaatg
aagaattgatggagtacctttaaccaccttatctactgtatggaaagtgg
aggcctaattcttacctaaagggtaaagcctgaagaaaccacaggtcatt
tagttgggaactgccttggaagaaagaacaaattttttcatataaaataa
cgtttcaaaccagggtgaccatggttcccttcccttacctttcctcggtc
taagtt

gaattcaaactcaactattcaatctgtttctttgaaatcaccaagtacta
agtagatcataaacatcctgatttagaagaagtcaaaatgttccctgcat
ctggggataacaggatgatgttgttgaaaaaacaaaaaacaaaaacaaaa
acaaaacattcattttacaaagtgtgtgtcaaacagagagaagatttcct
gatctttaaaacagtcaatacatcttcgtaaccatgaaggtatttattca
cgataacaaagccattttgaatgagagatgtgtgtgtccaaacacaggtg
gaacagacccaacctgatgaaagtatggcacattcccagtgagttgctga
ccaatatgactttagagaaggaatgataaaaaacactaatattttttttt
aattataccacatgagaaccatcagagcaagaaatgctatttagagatgg
tctctttgtttaaatttcagctgctgagtttttgtacttggcaacttaca
aatttccttaagtcatcaatagttattgatttacattagaaagcaagagc
ttgggcttgctgcttttcagaggattaacttctgcctaagttgtacatat
ttagaggatataaaggtagacatctgaaaggaccatcctatgaattctat
aacttgtatacagagtatcataccatacaggatgtaattgatgactagat
aaaaattagatatgtgtcaattgtgtgttcatttataaaaattgcctcct
tctaaaataattttacccagttgaaatttttttttggagaaaaggtatac
tctgtagcactagctggccatatagacataaagttggccttgaactcgta
aaaatatgtcttcctttgcatctgaagtactgggaatgaaaggtatatac
caccacctttggttctgaaaaaaaattaaagtctctcagaaatagtaaag
ttatattctttagcaccatttaaaatcagaatgccaaactaattaccatt
tttatttcaaaaaattactttcgtctttttcagaggaatatggaagtttt
ttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_25326993_25328040
seq2: B6Ng01-175L12.g_65_1121

seq1  GAATTCAAACTCAACTATTCAATCTGTTTCTTTGAAATCACCAAGTACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTCAACTATTCAATCTGTTTCTTTGAAATCACCAAGTACTA  50

seq1  AGTAGATCATAAACATCCTGATTTAGAAGAAGTCAAAATGTTCCCTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATCATAAACATCCTGATTTAGAAGAAGTCAAAATGTTCCCTGCAT  100

seq1  CTGGGGATAACAGGATGATGTTGTTGAAAAAACAAAAAACAAAAACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATAACAGGATGATGTTGTTGAAAAAACAAAAAACAAAAACAAAA  150

seq1  ACAAAACATTCATTTTACAAAGTGTGTGTCAAACAGAGAGAAGATTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACATTCATTTTACAAAGTGTGTGTCAAACAGAGAGAAGATTTCCT  200

seq1  GATCTTTAAAACAGTCAATACATCTTCGTAACCATGAAGGTATTTATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTAAAACAGTCAATACATCTTCGTAACCATGAAGGTATTTATTCA  250

seq1  CGATAACAAAGCCATTTTGAATGAGAGATGTGTGTGTCCAAACACAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAACAAAGCCATTTTGAATGAGAGATGTGTGTGTCCAAACACAGGTG  300

seq1  GAACAGACCCAACCTGATGAAAGTATGGCACATTCCCAGTGAGTTGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGACCCAACCTGATGAAAGTATGGCACATTCCCAGTGAGTTGCTGA  350

seq1  CCAATATGACTTTAGAGAAGGAATGATAAAAAACACTAATATTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATGACTTTAGAGAAGGAATGATAAAAAACACTAATATTTTTTTTT  400

seq1  AATTATACCACATGAGAACCATCAGAGCAAGAAATGCTATTTAGAGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATACCACATGAGAACCATCAGAGCAAGAAATGCTATTTAGAGATGG  450

seq1  TCTCTTTGTTTAAATTTCAGCTGCTGAGTTTTTGTACTTGGCAACTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTGTTTAAATTTCAGCTGCTGAGTTTTTGTACTTGGCAACTTACA  500

seq1  AATTTCCTTAAGTCATCAATAGTTATTGATTTACATTAGAAAGCAAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTTAAGTCATCAATAGTTATTGATTTACATTAGAAAGCAAGAGC  550

seq1  TTGGGCTTGCTGCTTTTCAGAGGATTAACTTCTGCCTAAGTTGTACATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTTGCTGCTTTTCAGAGGATTAACTTCTGCCTAAGTTGTACATAT  600

seq1  TTAGAGGATATAAAGGTAGACATCTGAAAGGACCATCCTATGAATTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGATATAAAGGTAGACATCTGAAAGGACCATCCTATGAATTCTAT  650

seq1  AACTTGTATACAGAGTATCATACCATACAGGATGTAATTGATGACTAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTATACAGAGTATCATACCATACAGGATGTAATTGATGACTAGAT  700

seq1  AAAAATTAGATATGTGTCAATTGTGTGTTCATTTATAAAAATTGCCTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAGATATGTGTCAATTGTGTGTTCATTTATAAAAATTGCCTCCT  750

seq1  TCTAAAATAATTTTACCCAGTTGAAA-TTTTTTTTGGAGAAAAGGTATAC  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCTAAAATAATTTTACCCAGTTGAAATTTTTTTTTGGAGAAAAGGTATAC  800

seq1  TCTGTAGCACTAGCTGGCCATATAGACAT-AAGTTGGCCTTGAACTCGTA  848
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTGTAGCACTAGCTGGCCATATAGACATAAAGTTGGCCTTGAACTCGTA  850

seq1  AAAATATGTCTTCCTTTGCATCTGAAGTACT-GGAATGAAAGGTATATAC  897
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAAATATGTCTTCCTTTGCATCTGAAGTACTGGGAATGAAAGGTATATAC  900

seq1  CACCACCTTTGGTTCTG-AAAAAAATTAAAGTCTCTCAG-AATAGTAAAG  945
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  CACCACCTTTGGTTCTGAAAAAAAATTAAAGTCTCTCAGAAATAGTAAAG  950

seq1  TTATATTCTTTAGCACCA-TTAAAATCAG-ATGCCAAACTAATTACCA--  991
      |||||||||||||||||| |||||||||| ||||||||||||||||||  
seq2  TTATATTCTTTAGCACCATTTAAAATCAGAATGCCAAACTAATTACCATT  1000

seq1  TTTATTCCAAAAAATTACTTCGGTC-TTTTCAGAGGAATATTGGGAGTTT  1040
      |||||| |||||||||||||  ||| |||||||||||||| ||| |||||
seq2  TTTATTTCAAAAAATTACTTTCGTCTTTTTCAGAGGAATA-TGGAAGTTT  1049

seq1  TTTTTTTT  1048
      ||||||||
seq2  TTTTTTTT  1057


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