BAC Information

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BAC

Clone NameB6Ng01-175M17
Chromosome3 (Build37)
Map Location 5,967,524 - 5,968,627
singlet/doubletsinglet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165
Downstream geneLOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175M17.bB6Ng01-175M17.g
ACCGA003505GA003506
length1,1221,169
definitionB6Ng01-175M17.b B6Ng01-175M17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctaaggataaatattaaggctttatggacttgcccccaattttc
ccatgaccattttacttctctctctctctctctctctctctctctctcgt
ttccttgtttgcttgctttccatttttcatgttttcttgcattcttgctt
ttttctttctgtgacagagacttagtatgacttagtatgacagagattta
taactccagatgttttggcacttactatacagaccagattttcacagatc
acataagagatctacactctacatagagctttctttcattagctgagcac
caccaggaagttgagatgtgtgaaaattgccagagcataaccagagtcta
cctcctgcagtccagaagacaaagagtccagaagcatctagaagggccat
gtcatgtcattctaactttaaatttaaataaatggttaagagtatttctt
aataatgaaagacaaagtagctaagataatattactgtgactgtgtaaag
aaacaatgcctgcctccacaatctttttctctagacttatcatataatat
actatatgaataatttcattaatgttttctcttcattttaatgtgggtta
cttttctgcttagtttactgcagtaagccttgtatgcaaaaatcctcttg
ggcatatgctattgaagtagcttaaaatgactatatattgggggaatata
tatatatattacaatgtagactataaatgtatattagataatatagtata
tattaggactctcatctaatctaatatgctactgtatgtagcaaaagctt
tataaaataaggcttctttatattttgattaccaatgatatactttgaat
cttaataggtgccaattattgcttgatttattttttcagtaattaatctt
gctctggtttcaaacaaaatagataatatattttttaacttgattaaagc
taagatgcttttccaaagtttaagatcagaacatatttaatgaacctatt
taaagtgttcttaggtgaaaaaagtacagttaaggtttgaagaaccttaa
aatattggtgttattaggtaaaacaataaataaaatgccaagcttgcagt
agttgggaaatgatattttctc

gaattcaacacaacaatcgtagtaatggacagatcctgggaacagaaact
aaacagagacacactgaaactaacagaagttatgaaacacatggatttaa
cagatatctacagaatattttatcctaaaagaaaaggatataacttctca
gcacctcatggtactttctccaaaattgaccatataattggtcataaaac
aggtctcaacaaatacaaaaatattgaaattatcccatgtatcctatcag
accaccacagactaaggctgatcttcaataacaacataaataatagaaag
ccaacattcacgtagaagctgaacaccactctattcaaagttaacttggt
caaggaagaaataaagaaataaattaaagactttttagaggttaatgaaa
atgaagacacagcatacccaaacttatgggacacaatgaaagcagtccta
ataggaaaactcaaagctctgagtgcctccaaaaagaaagtagagagagc
acacactagcagcttgccagcacacataaaaggtctagaacaaaaggaag
caagttcacccacgggtagtagacagcaggaaatagtcaaactcagggct
gaaatcaaccatgtggaaacaaaaagaactatacaaagaatcaaccaagt
caggagctggttcttcaggaaaatcaatagaatagataaaccctttgcca
gaataactagagggcacagggacagtatcctaattaacaatattagaaat
gaaaagggatacatcaacataacctgagaaaattcaaggcatcatcagat
cctactacaaaaagctatactctatgaaactggcgaccctggatgaaatg
gacaaatttctagacaagtaccaggtaccaaagtaaatcaggatcaaatt
aatgatataacagtcccatgtcccctaagaaatagaagtagtcatttata
agtctccaaaacaataaacaaacaaatgccaaggaccagataggcttaga
gaattgtctgtcagaccttcaaagaccttaatcaaatctctcaactattc
aacaaattagaacaggagtgctctacctaattcattcttggagcctacat
aactctgatacccttagaccaactcaactagatgatacttcgaaccatta
ctctttattggaatatatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_5967524_5968627
seq2: B6Ng01-175M17.b_46_1167 (reverse)

seq1  GAGAAAATATCATT--CCAACTACTGC-AGCTT-GCATTTTA-TTAT--G  43
      ||||||||||||||  ||||||||||| ||||| |||||||| ||||   
seq2  GAGAAAATATCATTTCCCAACTACTGCAAGCTTGGCATTTTATTTATTGT  50

seq1  TTTAC--TATAACACATTAATTTTAAGGTTC-TCAA--CCTAACTGTACT  88
      |||||   |||||||    |||||||||||| ||||  | ||||||||||
seq2  TTTACCTAATAACACCAATATTTTAAGGTTCTTCAAACCTTAACTGTACT  100

seq1  TTTTTCACCT-AGAACACTTT-AATAGGTTCATTAAATATGTTTCTGATC  136
      |||||||||| |||||||||| ||||||||||||||||||| ||||||||
seq2  TTTTTCACCTAAGAACACTTTAAATAGGTTCATTAAATATG-TTCTGATC  149

seq1  TT-AACTTTGGAAAAGCATCTTAGCTTTAATCAAGTT-AAAAATATATTA  184
      || |||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTAAACTTTGGAAAAGCATCTTAGCTTTAATCAAGTTAAAAAATATATTA  199

seq1  TCTATTTTGTTTGAAACCAGAGCAAGATTAATTACTG-AAAAATAAATCA  233
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCTATTTTGTTTGAAACCAGAGCAAGATTAATTACTGAAAAAATAAATCA  249

seq1  AGCAATAATTGGCACCTATTAAGATTC-AAGTATATCATTGGTAATCAAA  282
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGCAATAATTGGCACCTATTAAGATTCAAAGTATATCATTGGTAATCAAA  299

seq1  ATATAAAGAAGCCTTATTTTAT-AAGCTTTTGCTACATACAGTAGCATAT  331
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATATAAAGAAGCCTTATTTTATAAAGCTTTTGCTACATACAGTAGCATAT  349

seq1  TAGATTAGATGAGAGTCCTAATATATACTATATTATCTAATATACATTTA  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTAGATGAGAGTCCTAATATATACTATATTATCTAATATACATTTA  399

seq1  TAGTCTACATTGTAATATATATATATATTCCCCCAATATATAGTCATTTT  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTACATTGTAATATATATATATATTCCCCCAATATATAGTCATTTT  449

seq1  AAGCTACTTCAATAGCATATGCCCAAGAGGATTTTTGCATACAAGGCTTA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACTTCAATAGCATATGCCCAAGAGGATTTTTGCATACAAGGCTTA  499

seq1  CTGCAGTAAACTAAGCAGAAAAGTAACCCACATTAAAATGAAGAGAAAAC  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTAAACTAAGCAGAAAAGTAACCCACATTAAAATGAAGAGAAAAC  549

seq1  ATTAATGAAATTATTCATATAGTATATTATATGATAAGTCTAGAGAAAAA  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGAAATTATTCATATAGTATATTATATGATAAGTCTAGAGAAAAA  599

seq1  GATTGTGGAGGCAGGCATTGTTTCTTTACACAGTCACAGTAATATTATCT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGGAGGCAGGCATTGTTTCTTTACACAGTCACAGTAATATTATCT  649

seq1  TAGCTACTTTGTCTTTCATTATTAAGAAATACTCTTAACCATTTATTTAA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACTTTGTCTTTCATTATTAAGAAATACTCTTAACCATTTATTTAA  699

seq1  ATTTAAAGTTAGAATGACATGACATGGCCCTTCTAGATGCTTCTGGACTC  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGTTAGAATGACATGACATGGCCCTTCTAGATGCTTCTGGACTC  749

seq1  TTTGTCTTCTGGACTGCAGGAGGTAGACTCTGGTTATGCTCTGGCAATTT  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTCTGGACTGCAGGAGGTAGACTCTGGTTATGCTCTGGCAATTT  799

seq1  TCACACATCTCAACTTCCTGGTGGTGCTCAGCTAATGAAAGAAAGCTCTA  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACATCTCAACTTCCTGGTGGTGCTCAGCTAATGAAAGAAAGCTCTA  849

seq1  TGTAGAGTGTAGATCTCTTATGTGATCTGTGAAAATCTGGTCTGTATAGT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGTGTAGATCTCTTATGTGATCTGTGAAAATCTGGTCTGTATAGT  899

seq1  AAGTGCCAAAACATCTGGAGTTATAAATCTCTGTCATACTAAGTCATACT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCAAAACATCTGGAGTTATAAATCTCTGTCATACTAAGTCATACT  949

seq1  AAGTCTCTGTCACAGAAAGAAAAAAGCAAGAATGCAAGAAAACATGAAAA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTGTCACAGAAAGAAAAAAGCAAGAATGCAAGAAAACATGAAAA  999

seq1  ATGGAAAGCAAGCAAACAAGGAAACGAGAGAGAGAGAGAGAGAGAGAGAG  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGCAAGCAAACAAGGAAACGAGAGAGAGAGAGAGAGAGAGAGAG  1049

seq1  AGAGAGAAGTAAAATGGTCATGGGAAAATTGGGGGCAAGTCCATAAAGCC  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAGTAAAATGGTCATGGGAAAATTGGGGGCAAGTCCATAAAGCC  1099

seq1  TTAATATTTATCCTTAGGAATTC  1104
      |||||||||||||||||||||||
seq2  TTAATATTTATCCTTAGGAATTC  1122


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