BAC Information

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BAC

Clone NameB6Ng01-175P11
Chromosome3 (Build37)
Map Location 119,331,976 - 119,443,080
singlet/doubletdoublet
Overlap geneLOC100043278, Ptbp2
Upstream geneDpyd, LOC100043275
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175P11.bB6Ng01-175P11.g
ACCGA003632GA003633
length1,1581,105
definitionB6Ng01-175P11.b B6Ng01-175P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,331,976 - 119,333,134)(119,441,979 - 119,443,080)
sequence
gaattcctcatctcactggcaaagtggagaaaccacttagagcaatactg
catcccactggacacattcacttgacatagaatgggttctagaaactgaa
agtaagggcctatgctctgtcttcagggtctgagtcttgagaggaaggct
ttgccaagaggagatatggaaggttaaaccccatgagtcatgtcaaccag
tcaacaagaggcttaaaggagcctcttctcaaggagaaaggaagcaacct
gggaaaaatgggaagatgggcattgaaagttcagaacagatgagagtatt
ttaaagcatccttcagtgtggtcaggaagatgacaacgtcggtggcacca
ataccaaaaccattaaaactacagtgaggtcaaaatcaaagaaaaactgg
aaataaaagaggcctgacaggatggctcctctaatggaactatttgtcac
caaccctgaagacctgagtttggttcctgaaacccacatggtaggagaga
acccaggggctactctgaccttcacaaatgtgctgtggcagaaccctgcc
cccagcgcaggataaaccaataaaattattttaaatagaaaaaaaagtga
ataaattttgaaaggatttaaatgagttctgaaatacagctcaaaattct
taaactttaggtaataaaaaaaaaaacaaaattaagaagctagggagatg
gctcagcagataggaacacttggttgctcctgcaaaggacccagacttag
ttcctagtccccattaagcatcataatgtaactcctgctccaaggagatc
catccaacaacctcttctggcctcttcaggaagtcatgctgtggacatac
atacatacagcgttttaaatatgaatatgtataaaataagcacatcttta
aaagaaaaattagttgatagagaatgaaaatcaaatagttgagacaatgg
ttccaactcagtatgtgtacctagaatcctacaagaggagcagagtttca
gtgtgaatatgaaaataccttggtgtagatgactgctgtgtccatgtaca
gagtagaccgagagaaacatcaggaattaagagcctttcaagggaatatt
taaaggcatttcctgagtactgaactggggccatttggtactgaactgtt
acagctgg

gaattccattacaaggaagcctttaacttcctgaggataactaactaaaa
gtatcttcatcttacccctcttttatcacctctcttttcccacatataac
tcccctaaaataaatgaagaaaaactggaatgaaaaagaatgttattaaa
atatgtatgcttcagatttggcgttctgtctaaaccaaaggtctttatgt
gttcttgttagggtgattttgtttgctttagcagcatgcagaaataacaa
agtatttacgaagatgaaaataggagtccatgggtgcatggaatttttta
aaaaagtatagtccaccacaaatgttgaaaaattgtacatgaagattttt
ctagaacatgcttattgctcttctttggatgtggttatcattattttaat
ttacccctaaaatggatggatctgtgctacttacataaagtgcagtataa
aaacaagcagctggaagttgattgaccgaagagtaggggaaatgtaagtt
agaataagcaaactgataatgtcaaattttaatcgttttctttaatttgt
cctgttttgaaatttcactttgatatttttaatactatcttcatttttat
ttctgtgtggatgttttctctgcatgtatgtttgtataccacctgtgtag
agtgcctgtgaagggcagaagagggcatctgattctctggaactggagtt
tacagttgttagctgccacatgagttctgggacccgagcccatgtcttca
acaggtcactaagtgctcatgactactgagccatctctatccccaagtat
agtatctttgaaatgaaggttactggctagagagaatccagattgatggt
tgagaaagaagaaagtagcttctaaagttttagttatgcccatcattttt
acaaacagatgagtgttgaaaatacttattacaaacatgtaacaactcca
ttcacttgtaaatgtataaaaatgattgggtatgaatgcaaatgagtcta
atgctcaagagcagtgttttgcagttaatttttcaggaggactttcaaaa
ctgggtgacctttataagcaatttgctgtctccagaacaatggcgctgct
gtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119331976_119333134
seq2: B6Ng01-175P11.b_46_1203

seq1  GAATTCCTCATCTCACTGGCAAAGTGGAGAAACCACTTAGAGCAATACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATCTCACTGGCAAAGTGGAGAAACCACTTAGAGCAATACTG  50

seq1  CATCCCACTGGACACATTCACTTGACATAGAATGGGTTCTAGAAACTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCACTGGACACATTCACTTGACATAGAATGGGTTCTAGAAACTGAA  100

seq1  AGTAAGGGCCTATGCTCTGTCTTCAGGGTCTGAGTCTTGAGAGGAAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGGCCTATGCTCTGTCTTCAGGGTCTGAGTCTTGAGAGGAAGGCT  150

seq1  TTGCCAAGAGGAGATATGGAAGGTTAAACCCCATGAGTCATGTCAACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAGAGGAGATATGGAAGGTTAAACCCCATGAGTCATGTCAACCAG  200

seq1  TCAACAAGAGGCTTAAAGGAGCCTCTTCTCAAGGAGAAAGGAAGCAACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAGAGGCTTAAAGGAGCCTCTTCTCAAGGAGAAAGGAAGCAACCT  250

seq1  GGGAAAAATGGGAAGATGGGCATTGAAAGTTCAGAACAGATGAGAGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAATGGGAAGATGGGCATTGAAAGTTCAGAACAGATGAGAGTATT  300

seq1  TTAAAGCATCCTTCAGTGTGGTCAGGAAGATGACAACGTCGGTGGCACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCATCCTTCAGTGTGGTCAGGAAGATGACAACGTCGGTGGCACCA  350

seq1  ATACCAAAACCATTAAAACTACAGTGAGGTCAAAATCAAAGAAAAACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAAACCATTAAAACTACAGTGAGGTCAAAATCAAAGAAAAACTGG  400

seq1  AAATAAAAGAGGCCTGACAGGATGGCTCCTCTAATGGAACTATTTGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAGAGGCCTGACAGGATGGCTCCTCTAATGGAACTATTTGTCAC  450

seq1  CAACCCTGAAGACCTGAGTTTGGTTCCTGAAACCCACATGGTAGGAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTGAAGACCTGAGTTTGGTTCCTGAAACCCACATGGTAGGAGAGA  500

seq1  ACCCAGGGGCTACTCTGACCTTCACAAATGTGCTGTGGCAGAACCCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGGGCTACTCTGACCTTCACAAATGTGCTGTGGCAGAACCCTGCC  550

seq1  CCCAGCGCAGGATAAACCAATAAAATTATTTTAAATAGAAAAAAAAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCGCAGGATAAACCAATAAAATTATTTTAAATAGAAAAAAAAGTGA  600

seq1  ATAAATTTTGAAAGGATTTAAATGAGTTCTGAAATACAGCTCAAAATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTTGAAAGGATTTAAATGAGTTCTGAAATACAGCTCAAAATTCT  650

seq1  TAAACTTTAGGTAATAAAAAAAAAAACAAAATTAAGAAGCTAGGGAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTAGGTAATAAAAAAAAAAACAAAATTAAGAAGCTAGGGAGATG  700

seq1  GCTCAGCAGATAGGAACACTTGGTTGCTCCTGCAAAGGACCCAGACTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCAGATAGGAACACTTGGTTGCTCCTGCAAAGGACCCAGACTTAG  750

seq1  TTCCTAGTCCCCATTAAGCATCATAATGTAACTCCTGCTCCAAGGAGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGTCCCCATTAAGCATCATAATGTAACTCCTGCTCCAAGGAGATC  800

seq1  CATCCAACAACCTCTTCTGGCCTCTTCAGGAAGTCATGCTGTGGACATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAACAACCTCTTCTGGCCTCTTCAGGAAGTCATGCTGTGGACATAC  850

seq1  ATACATACAGCGTTTTAAATATGAATATGTATAAAATAAGCACATCTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACAGCGTTTTAAATATGAATATGTATAAAATAAGCACATCTTTA  900

seq1  AAAGAAAAA-TAGTTGATAGAGAATGAAAATCAAATAGTTGAGACAATGG  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAATTAGTTGATAGAGAATGAAAATCAAATAGTTGAGACAATGG  950

seq1  -TCCAACTCAGTATGTGTACCTAGAATCCTACAAGAGGAGCAGAG-TTCA  997
       |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCCAACTCAGTATGTGTACCTAGAATCCTACAAGAGGAGCAGAGTTTCA  1000

seq1  GTGTGAATATGAAAATACC-TGGTGTAGGATGAACTGCTGTGTTCCCATG  1046
      ||||||||||||||||||| ||||||| |||| ||||||||||  |||||
seq2  GTGTGAATATGAAAATACCTTGGTGTA-GATG-ACTGCTGTGT--CCATG  1046

seq1  TACAGAGTAGACCGAGAGGAAACATCAGGAATTTAGAGCCCTTC-AGGGG  1095
      ||||||||||||||||| ||||||||||||||| |||||| ||| |||| 
seq2  TACAGAGTAGACCGAGA-GAAACATCAGGAATTAAGAGCCTTTCAAGGGA  1095

seq1  ATATTTAAA-GCATTCCCTGAGTACTG-ACTGGGG-CATTTGTACCTGAG  1142
      ||||||||| ||||| ||||||||||| ||||||| ||||||   ||  |
seq2  ATATTTAAAGGCATTTCCTGAGTACTGAACTGGGGCCATTTGGTACT--G  1143

seq1  AACTGTTTACCAGCTGG  1159
      |||||||   |||||||
seq2  AACTGTT--ACAGCTGG  1158


seq1: chr3_119441979_119443080
seq2: B6Ng01-175P11.g_65_1169 (reverse)

seq1  CAAACAGCAGCG-CATGGTGCTGGAGACAGCAAA-TGCTAATAAAGGGTC  48
      |||||||||||| ||| || |||||||||||||| |||| ||||| ||||
seq2  CAAACAGCAGCGCCATTGTTCTGGAGACAGCAAATTGCTTATAAA-GGTC  49

seq1  A-CCAGTTTTGTATGTCCTCCTG-AAAATTAACTGCAAACAACTGCTCTT  96
      | ||||||||| | ||||||||| |||||||||||||||  |||||||||
seq2  ACCCAGTTTTGAAAGTCCTCCTGAAAAATTAACTGCAAAACACTGCTCTT  99

seq1  GAGCATTAGACTCATTTTGCATTCATA-CCAATCATTTTTATACATTTAC  145
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  GAGCATTAGACTCA-TTTGCATTCATACCCAATCATTTTTATACATTTAC  148

seq1  AAGTGAATGGAGTTGTTACATGTTTGTAATAAGTATTTTCAACACTCATC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAATGGAGTTGTTACATGTTTGTAATAAGTATTTTCAACACTCATC  198

seq1  TGTTTTGTAAAATGATGGGCATAAACTAAAACTTTAGAAGCTACTTTCTT  245
      |||||   |||||||||||||| |||||||||||||||||||||||||||
seq2  TGTTTGTAAAAATGATGGGCAT-AACTAAAACTTTAGAAGCTACTTTCTT  247

seq1  CTTTCTCAACCATCAATCTGGATTCTCTCTAGCCAGTAACCTTCATTTC-  294
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTTCTCAACCATCAATCTGGATTCTCTCTAGCCAGTAACCTTCATTTCA  297

seq1  AAGATACTATACTTGGGGATAGAGATGGCTCAGTAGTCATGAGCACTTAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACTATACTTGGGGATAGAGATGGCTCAGTAGTCATGAGCACTTAG  347

seq1  TGACCTGTTGAAGACATGGGCTCGGGTCCCAGAACTCATGTGGCAGCTAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGTTGAAGACATGGGCTCGGGTCCCAGAACTCATGTGGCAGCTAA  397

seq1  CAACTGTAAACTCCAGTTCCAGAGAATCAGATGCCCTCTTCTGCCCTTCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTAAACTCCAGTTCCAGAGAATCAGATGCCCTCTTCTGCCCTTCA  447

seq1  CAGGCACTCTACACAGGTGGTATACAAACATACATGCAGAGAAAACATCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACTCTACACAGGTGGTATACAAACATACATGCAGAGAAAACATCC  497

seq1  ACACAGAAATAAAAATGAAGATAGTATTAAAAATATCAAAGTGAAATTTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAATAAAAATGAAGATAGTATTAAAAATATCAAAGTGAAATTTC  547

seq1  AAAACAGGACAAATTAAAGAAAACGATTAAAATTTGACATTATCAGTTTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGACAAATTAAAGAAAACGATTAAAATTTGACATTATCAGTTTG  597

seq1  CTTATTCTAACTTACATTTCCCCTACTCTTCGGTCAATCAACTTCCAGCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTAACTTACATTTCCCCTACTCTTCGGTCAATCAACTTCCAGCT  647

seq1  GCTTGTTTTTATACTGCACTTTATGTAAGTAGCACAGATCCATCCATTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTTTATACTGCACTTTATGTAAGTAGCACAGATCCATCCATTTT  697

seq1  AGGGGTAAATTAAAATAATGATAACCACATCCAAAGAAGAGCAATAAGCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTAAATTAAAATAATGATAACCACATCCAAAGAAGAGCAATAAGCA  747

seq1  TGTTCTAGAAAAATCTTCATGTACAATTTTTCAACATTTGTGGTGGACTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAGAAAAATCTTCATGTACAATTTTTCAACATTTGTGGTGGACTA  797

seq1  TACTTTTTTAAAAAATTCCATGCACCCATGGACTCCTATTTTCATCTTCG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTTAAAAAATTCCATGCACCCATGGACTCCTATTTTCATCTTCG  847

seq1  TAAATACTTTGTTATTTCTGCATGCTGCTAAAGCAAACAAAATCACCCTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACTTTGTTATTTCTGCATGCTGCTAAAGCAAACAAAATCACCCTA  897

seq1  ACAAGAACACATAAAGACCTTTGGTTTAGACAGAACGCCAAATCTGAAGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAACACATAAAGACCTTTGGTTTAGACAGAACGCCAAATCTGAAGC  947

seq1  ATACATATTTTAATAACATTCTTTTTCATTCCAGTTTTTCTTCATTTATT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATTTTAATAACATTCTTTTTCATTCCAGTTTTTCTTCATTTATT  997

seq1  TTAGGGGAGTTATATGTGGGAAAAGAGAGGTGATAAAAGAGGGGTAAGAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGAGTTATATGTGGGAAAAGAGAGGTGATAAAAGAGGGGTAAGAT  1047

seq1  GAAGATACTTTTAGTTAGTTATCCTCAGGAAGTTAAAGGCTTCCTTGTAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATACTTTTAGTTAGTTATCCTCAGGAAGTTAAAGGCTTCCTTGTAA  1097

seq1  TGGAATTC  1102
      ||||||||
seq2  TGGAATTC  1105


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