BAC Information

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BAC

Clone NameB6Ng01-176C01
Chromosome3 (Build37)
Map Location 46,698,535 - 46,833,711
singlet/doubletdoublet
Overlap genenone
Upstream geneEG241989
Downstream geneLOC545517, LOC383849, LOC383850, LOC100039426, LOC666202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176C01.bB6Ng01-176C01.g
ACCGA003748GA003749
length1,1331,095
definitionB6Ng01-176C01.b B6Ng01-176C01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,698,535 - 46,699,673)(46,832,603 - 46,833,711)
sequence
gaattcaattccatgtttagaggagattaaggcaaactttcccttgcctt
ccctatttacatatcactacttctgttatccaatttctagtatcattggt
taaggaaataaaatgaaaaaaattcactttactttttgcctccccttcct
ctgcttccaatctgccctgaatgcatgccagtgattatttgtgcctcata
ccaaggcaatgttatgtattttgagaaagataatgacttccacattaata
agtaaatagttgattctaagtgcacaatgtatttcccctccaccatttac
ataattattcagccattcttcttcaatacattttgtgacttgtctgatgc
cattaattctttgatatatgatttacttatcattactttatgaaaatcaa
taactgatgttgttagtgtttttaagttaaacacattttcttgcatattc
ctaggactcaattcaaaatatgtgtgttaacactgacacattgaagccta
tggagtgaaatgcaaagtatatactggtattttctagtctgtatatttac
ttatctctgatctttgaagtttcattttgaataaatatattgtgctatct
gaaatttgcctattaatattttctaatttgtttcgtattatgtcagcaat
catgttatttccattagacagttacaaaactttaatcattatttactctt
caaacattttcaagacaagaccctctttctgttatccacatggtaggaat
ttccattcatcttatctctttacttcaattatttcccatttagaacagct
ttaaagtatagttatcttaccaattagaagaaagttatcatttcttcttc
acttaaacatatttcaaggaaagcccatttctcttagacaacactgcaag
gacttataaattcatatacctaaaacatttttatgctttgtgtatgtgtg
gagtcatggattatgtttgtatccacatgaatacagtgatcttgaatatt
aaaaggtgatgtccaattcactgataacaagcaatttgagctgtccatgt
gggactgggaactgaactcagtcttgcaaaagcaaacagtgcttggcaac
agaagccatctttttaatccttactaccctctc

gaattccatgttcattcattctatttttttacttgatttttttatgtaat
tgctccaaatatttttacaattgttttccaaacaaaataaaaattaaaaa
tcagttttaataactgaatttaaattgcaaggtttgttctgtcatttttc
acaagcttttatttgggaagcttccaaaggaaaacagttcctctactcca
cagtgtcacatttttaacatgataatgttagaaaattggaattatatgaa
ataattaatctatagatcttcacattcacacataagagatattattcatg
tatgtagaaaagataaagaagaagaacctcaatgagaattctagcactaa
aatatatttgtatgaatcacacaaagagatagcctggggatgagaagatg
gtgtttaaggcacatgaatcccatgaaagctgttattgccagaaggctca
caaaggtatgattgacaagcacctccttcaggttacaaatgcagatggtg
tatgctgagaagagaaatcatctccattggagacgactgtaaactgtgct
agtagttcctggaatgtagctgtcatgaatcaaggtccagctgctgtgga
gttttcagtgccgcaactggcttagagtacgccatactgtgatgctatac
cgcacccaagacgctgaaccaatggttcgcaaactggacatgtgtagact
tgtttctctgatgccttatagcttagtgagatgaagggatatttgctcac
ctttcctcaggaaaggtcatgcagtagaaaatatcacctaaaatgaagta
gaataagtttatcaattattgtttatcttagaatttgagattataactca
ataataacgaccgtttttaaacaaatgtggttaagagaataatataggat
ctccaacatatgttagcaggggcgacggggcacaggcaaaatcattactg
ctttcttcattgctgagtacaagtgatacgacaatgtaaagacattactg
tgagcatacacagtgaagaagaattcaaacatatactgaatatgccaata
tgtatctatatttaggtctcagtttctctacatatgagttaacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_46698535_46699673
seq2: B6Ng01-176C01.b_42_1174

seq1  GAATTCAATTCCATGTTTAGAGGAGATTAAGGCAAACTTTCCCTTGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCATGTTTAGAGGAGATTAAGGCAAACTTTCCCTTGCCTT  50

seq1  CCCTATTTACATATCACTACTTCTGTTATCCAATTTCTAGTATCATTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTTACATATCACTACTTCTGTTATCCAATTTCTAGTATCATTGGT  100

seq1  TAAGGAAATAAAATGAAAAAAATTCACTTTACTTTTTGCCTCCCCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAATAAAATGAAAAAAATTCACTTTACTTTTTGCCTCCCCTTCCT  150

seq1  CTGCTTCCAATCTGCCCTGAATGCATGCCAGTGATTATTTGTGCCTCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCAATCTGCCCTGAATGCATGCCAGTGATTATTTGTGCCTCATA  200

seq1  CCAAGGCAATGTTATGTATTTTGAGAAAGATAATGACTTCCACATTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCAATGTTATGTATTTTGAGAAAGATAATGACTTCCACATTAATA  250

seq1  AGTAAATAGTTGATTCTAAGTGCACAATGTATTTCCCCTCCACCATTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATAGTTGATTCTAAGTGCACAATGTATTTCCCCTCCACCATTTAC  300

seq1  ATAATTATTCAGCCATTCTTCTTCAATACATTTTGTGACTTGTCTGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATTCAGCCATTCTTCTTCAATACATTTTGTGACTTGTCTGATGC  350

seq1  CATTAATTCTTTGATATATGATTTACTTATCATTACTTTATGAAAATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTCTTTGATATATGATTTACTTATCATTACTTTATGAAAATCAA  400

seq1  TAACTGATGTTGTTAGTGTTTTTAAGTTAAACACATTTTCTTGCATATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGATGTTGTTAGTGTTTTTAAGTTAAACACATTTTCTTGCATATTC  450

seq1  CTAGGACTCAATTCAAAATATGTGTGTTAACACTGACACATTGAAGCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACTCAATTCAAAATATGTGTGTTAACACTGACACATTGAAGCCTA  500

seq1  TGGAGTGAAATGCAAAGTATATACTGGTATTTTCTAGTCTGTATATTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGAAATGCAAAGTATATACTGGTATTTTCTAGTCTGTATATTTAC  550

seq1  TTATCTCTGATCTTTGAAGTTTCATTTTGAATAAATATATTGTGCTATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTGATCTTTGAAGTTTCATTTTGAATAAATATATTGTGCTATCT  600

seq1  GAAATTTGCCTATTAATATTTTCTAATTTGTTTCGTATTATGTCAGCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGCCTATTAATATTTTCTAATTTGTTTCGTATTATGTCAGCAAT  650

seq1  CATGTTATTTCCATTAGACAGTTACAAAACTTTAATCATTATTTACTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTATTTCCATTAGACAGTTACAAAACTTTAATCATTATTTACTCTT  700

seq1  CAAACATTTTCAAGACAAGACCCTCTTTCTGTTATCCACATGGTAGGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTTTCAAGACAAGACCCTCTTTCTGTTATCCACATGGTAGGAAT  750

seq1  TTCCATTCATCTTATCTCTTTACTTCAATTATTTCCCATTTAGAACAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTCATCTTATCTCTTTACTTCAATTATTTCCCATTTAGAACAGCT  800

seq1  TTAAAGTATAGTTATCTTACCAATTAGAAGAAAGTTATCATTTCTTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTATAGTTATCTTACCAATTAGAAGAAAGTTATCATTTCTTCTTC  850

seq1  ACTTAAACATATTTCAAGGAAAGCCCATTTCTCTTAGACAACACTGCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAACATATTTCAAGGAAAGCCCATTTCTCTTAGACAACACTGCAAG  900

seq1  GACTTATAAATTCATATACCTAAAACATTTTTATGCTTTGTGTATGTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTATAAATTCATATACCTAAAACATTTTTATGCTTTGTGTATGTGTG  950

seq1  GAGTCATGGATTATGTTTGTATTCCACATGAATACAGGTGATCTTGAATA  1000
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  GAGTCATGGATTATGTTTGTA-TCCACATGAATACA-GTGATCTTGAATA  998

seq1  TTAAAGGGTGATGTCCAATTCACTGATAACAGGCAATTTTGAGCTGTTCC  1050
      ||||| ||||||||||||||||||||||||| |||| ||||||||| |||
seq2  TTAAAAGGTGATGTCCAATTCACTGATAACAAGCAA-TTTGAGCTG-TCC  1046

seq1  ATGTGGGACTGGGAACTGAACTCAGGTCTTTGGCAAAAGCAACAAGTGC-  1099
      |||||||||||||||||||||||| |||||  ||||||||||  ||||| 
seq2  ATGTGGGACTGGGAACTGAACTCA-GTCTT--GCAAAAGCAAACAGTGCT  1093

seq1  TGGCACACAG-AGCCATCTTTCTAATCCCTTACTA-CCTCTC  1139
      ||||| |||| |||||||||| |||| |||||||| ||||||
seq2  TGGCA-ACAGAAGCCATCTTTTTAAT-CCTTACTACCCTCTC  1133


seq1: chr3_46832603_46833711
seq2: B6Ng01-176C01.g_65_1159 (reverse)

seq1  CTGTTTACTCATATGTAGAGAAACTGGAGA-CTAAATATAGGATACATAT  49
      ||||| ||||||||||||||||||| |||| ||||||||| |||||||||
seq2  CTGTTAACTCATATGTAGAGAAACT-GAGACCTAAATATA-GATACATAT  48

seq1  TGGCATATTTCCAGTTATATGTTTTTAATTTCTCTTCCACTGTGTATGGC  99
      |||||||||  ||| |||||| ||| ||||  |||| |||||||||| ||
seq2  TGGCATATT--CAG-TATATG-TTTGAATTCTTCTT-CACTGTGTAT-GC  92

seq1  TCCACAGTAATGTCTTTACAATTGTCGTATCACTTTGTACTCAGGCAATG  149
      | ||||||||||||||||| ||||||||||||| ||||||||| ||||||
seq2  T-CACAGTAATGTCTTTAC-ATTGTCGTATCAC-TTGTACTCA-GCAATG  138

seq1  AAGAAAGCAGTAATGATTTTGCCCTGTGCCCCGTCGCCCCCTGCTAACAT  199
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  AAGAAAGCAGTAATGATTTTG-CCTGTGCCCCGTCG-CCCCTGCTAACAT  186

seq1  ATGTTGGAGATCCTATATTATTCTCTTAACCACATTTGTTTTAAAAACGG  249
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGTTGGAGATCCTATATTATTCTCTTAACCACATTTG-TTTAAAAACGG  235

seq1  TCGTTATTATTGAGTTATAATCTCAAATTCTAAGATAAACAATAATTGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTATTATTGAGTTATAATCTCAAATTCTAAGATAAACAATAATTGAT  285

seq1  AAACTTATTCTACTTCATTTTAGGTGATATTTTCTACTGCATGACCTTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATTCTACTTCATTTTAGGTGATATTTTCTACTGCATGACCTTTC  335

seq1  CTGAGGAAAGGTGAGCAAATATCCCTTCATCTCACTAAGCTATAAGGCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAAAGGTGAGCAAATATCCCTTCATCTCACTAAGCTATAAGGCAT  385

seq1  CAGAGAAACAAGTCTACACATGTCCAGTTTGCGAACCATTGGTTCAGCGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACAAGTCTACACATGTCCAGTTTGCGAACCATTGGTTCAGCGT  435

seq1  CTTGGGTGCGGTATAGCATCACAGTATGGCGTACTCTAAGCCAGTTGCGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTGCGGTATAGCATCACAGTATGGCGTACTCTAAGCCAGTTGCGG  485

seq1  CACTGAAAACTCCACAGCAGCTGGACCTTGATTCATGACAGCTACATTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAAACTCCACAGCAGCTGGACCTTGATTCATGACAGCTACATTCC  535

seq1  AGGAACTACTAGCACAGTTTACAGTCGTCTCCAATGGAGATGATTTCTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTACTAGCACAGTTTACAGTCGTCTCCAATGGAGATGATTTCTCT  585

seq1  TCTCAGCATACACCATCTGCATTTGTAACCTGAAGGAGGTGCTTGTCAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCATACACCATCTGCATTTGTAACCTGAAGGAGGTGCTTGTCAAT  635

seq1  CATACCTTTGTGAGCCTTCTGGCAATAACAGCTTTCATGGGATTCATGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTTTGTGAGCCTTCTGGCAATAACAGCTTTCATGGGATTCATGTG  685

seq1  CCTTAAACACCATCTTCTCATCCCCAGGCTATCTCTTTGTGTGATTCATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAACACCATCTTCTCATCCCCAGGCTATCTCTTTGTGTGATTCATA  735

seq1  CAAATATATTTTAGTGCTAGAATTCTCATTGAGGTTCTTCTTCTTTATCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATATTTTAGTGCTAGAATTCTCATTGAGGTTCTTCTTCTTTATCT  785

seq1  TTTCTACATACATGAATAATATCTCTTATGTGTGAATGTGAAGATCTATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACATACATGAATAATATCTCTTATGTGTGAATGTGAAGATCTATA  835

seq1  GATTAATTATTTCATATAATTCCAATTTTCTAACATTATCATGTTAAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATTATTTCATATAATTCCAATTTTCTAACATTATCATGTTAAAAA  885

seq1  TGTGACACTGTGGAGTAGAGGAACTGTTTTCCTTTGGAAGCTTCCCAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACACTGTGGAGTAGAGGAACTGTTTTCCTTTGGAAGCTTCCCAAAT  935

seq1  AAAAGCTTGTGAAAAATGACAGAACAAACCTTGCAATTTAAATTCAGTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTGTGAAAAATGACAGAACAAACCTTGCAATTTAAATTCAGTTA  985

seq1  TTAAAACTGATTTTTAATTTTTATTTTGTTTGGAAAACAATTGTAAAAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTGATTTTTAATTTTTATTTTGTTTGGAAAACAATTGTAAAAAT  1035

seq1  ATTTGGAGCAATTACATAAAAAAATCAAGTAAAAAAATAGAATGAATGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAGCAATTACATAAAAAAATCAAGTAAAAAAATAGAATGAATGAA  1085

seq1  CATGGAATTC  1109
      ||||||||||
seq2  CATGGAATTC  1095


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