BAC Information

Click to search

BAC

Clone NameB6Ng01-176J16
Chromosome3 (Build37)
Map Location 52,987,261 - 52,988,411
singlet/doubletsinglet
Overlap geneLhfp
Upstream geneLOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832, Cog6, LOC100039808
Downstream geneLOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937, Trpc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176J16.bB6Ng01-176J16.g
ACCGA004099GA004100
length1,1521,195
definitionB6Ng01-176J16.b B6Ng01-176J16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggcccccagataaggaataccggtttgaccataccagttccg
aatgtgggcacatggcttcccactcgggacactcattatctctcactgag
actgtcttaataattccaggagctaaataagtctggtggaaaaatcagtt
gtttgcctgaggttttgttttaagtccacattcttttaaatatccctagg
tacaatgagttaattccatacccccttcaaaaaaaatttataacaaggta
taagcttcattagtatgaaaaaatgtatggatggtgttgtaattgctcct
cccatcctctgtaagctgataattttaaaatagacagaaaaggaacaaag
aaaaggggagagaaaaacaccctgtatgtatgtggctatggcttataatt
cagagaagctgcatctttgcggctctaagcggggcaccttcaaaccagtg
cccattaactgtgcattgctaaagtgccaatgcggactgtggcttaacgg
ctctgagtctgattagtctatagttaattaacaagcagttagaagtcagc
accagagagcccgaggtcaagagtcagcttctctgtggatagtcactgat
ggacacctcgtcccaattcaggtgacctgtcgtgttatgttattgatgat
agagaacagaatgtgggtggattcaagctaaaaccatcaccagtgcagaa
tcactgagtgcaattggtcaaaatgacatgcttctaaggttagggatgtt
tgaacggtagctaactgagaagtctagctttgccactttattagaatcct
ctgagcaaagcatttcgcttgctaagtcttagtgtctatctgtcaaatga
agatgttatcagctcactgaggacattgcatgggctgaagaggatagagg
tacttgtctaaccgggatggagagatccttgcgtctgtctgtctgaccag
ttctggggctggtcctcggtctcggcatgccagtgtccttacccctctgg
ggtccagcaatgctctctgcttggccctctccagcttcttctgtatgcag
ttgctctcaggcatgcagctggagagggccaatttggtgagtgaatttca
ttaacttaaagaacacactacactgatggcttcttggagtgattgggatc
ac
gaattcagagatctgcctgcctttgtaaacacagacaataagctagctgt
atgggatctggctctgggatcaccattcttaccactcctgggcctaaact
acctctcccaggctgactttgaactcaggaatttgcctgcctttgtaagc
acaaataaatttagctgggtgagatttcaccctgtggttaccactcccta
aatttctttatttccctccttaatatctttctgactagctggactcttag
tgcagctgcctctgttcttttttaggtccgttaagcccctcatacaattc
atattgcattcttatattctgcatagttgagaaattttatattcttgcac
tcatgctttcagaattctttcccacagcctttaagggctgtcctgaaggt
cacagcatttaccattttgttaaggaacaccagaaacaatcttgcctcct
gggctcttgctgtttctaattattgtggagtgattgatgttggcacggag
agcattcctcaaaggaggaacatgataataggtacattattatacaaata
agctttatgcctagcacccatctacactcctggaggcccacaccctgcta
gttctgctccagggctggaaactgtgtcagctgtccctttcacagtggtc
atgcaggacatatgtgtgcagtattttcagaggccagaagagggagtcag
attccctgggactgattgttagttaacatggaggtgctgggaatagaacc
tgggtcttgtagaagagcagccagtgctcttaactgttgaaccatctgtt
gaggacctctctacttctctacttctgtgtgtgctcaggaagctgatggc
cagtgtttacttttgttttaatctgtgcatttagattgtaaattaagcat
ggcagtgattccatccctgaagagctgataagtcccctttctttacagtt
cactttaaagtctttataaaaatgactcttccttgacccatgggttatta
gattaatgtcttcaaatttcaaacatagctttattctcactggatcagtt
gtctttattgtagtgtagtttaagaacgcagaacacctctgtactagaac
tgttacctggggtgatactttatggcctatcatcctttgagtgtgtcgtt
gtgtcaaggatggcttatgtggggaattatatggattctactaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_52987261_52988411
seq2: B6Ng01-176J16.b_43_1194

seq1  GAATTCCAGGCCCCCAGATAAGGAATACCGGTTTGACCATACCAGTTCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCCCCAGATAAGGAATACCGGTTTGACCATACCAGTTCCG  50

seq1  AATGTGGGCACATGGCTTCCCACTCGGGACACTCATTATCTCTCACTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGGCACATGGCTTCCCACTCGGGACACTCATTATCTCTCACTGAG  100

seq1  ACTGTCTTAATAATTCCAGGAGCTAAATAAGTCTGGTGGAAAAATCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTTAATAATTCCAGGAGCTAAATAAGTCTGGTGGAAAAATCAGTT  150

seq1  GTTTGCCTGAGGTTTTGTTTTAAGTCCACATTCTTTTAAATATCCCTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCTGAGGTTTTGTTTTAAGTCCACATTCTTTTAAATATCCCTAGG  200

seq1  TACAATGAGTTAATTCCATACCCCCTTCAAAAAAAATTTATAACAAGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGAGTTAATTCCATACCCCCTTCAAAAAAAATTTATAACAAGGTA  250

seq1  TAAGCTTCATTAGTATGAAAAAATGTATGGATGGTGTTGTAATTGCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTCATTAGTATGAAAAAATGTATGGATGGTGTTGTAATTGCTCCT  300

seq1  CCCATCCTCTGTAAGCTGATAATTTTAAAATAGACAGAAAAGGAACAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTCTGTAAGCTGATAATTTTAAAATAGACAGAAAAGGAACAAAG  350

seq1  AAAAGGGGAGAGAAAAACACCCTGTATGTATGTGGCTATGGCTTATAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGGAGAGAAAAACACCCTGTATGTATGTGGCTATGGCTTATAATT  400

seq1  CAGAGAAGCTGCATCTTTGCGGCTCTAAGCGGGGCACCTTCAAACCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGCTGCATCTTTGCGGCTCTAAGCGGGGCACCTTCAAACCAGTG  450

seq1  CCCATTAACTGTGCATTGCTAAAGTGCCAATGCGGACTGTGGCTTAACGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTAACTGTGCATTGCTAAAGTGCCAATGCGGACTGTGGCTTAACGG  500

seq1  CTCTGAGTCTGATTAGTCTATAGTTAATTAACAAGCAGTTAGAAGTCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTCTGATTAGTCTATAGTTAATTAACAAGCAGTTAGAAGTCAGC  550

seq1  ACCAGAGAGCCCGAGGTCAAGAGTCAGCTTCTCTGTGGATAGTCACTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGAGCCCGAGGTCAAGAGTCAGCTTCTCTGTGGATAGTCACTGAT  600

seq1  GGACACCTCGTCCCAATTCAGGTGACCTGTCGTGTTATGTTATTGATGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCTCGTCCCAATTCAGGTGACCTGTCGTGTTATGTTATTGATGAT  650

seq1  AGAGAACAGAATGTGGGTGGATTCAAGCTAAAACCATCACCAGTGCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAGAATGTGGGTGGATTCAAGCTAAAACCATCACCAGTGCAGAA  700

seq1  TCACTGAGTGCAATTGGTCAAAATGACATGCTTCTAAGGTTAGGGATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAGTGCAATTGGTCAAAATGACATGCTTCTAAGGTTAGGGATGTT  750

seq1  TGAACGGTAGCTAACTGAGAAGTCTAGCTTTGCCACTTTATTAGAATCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACGGTAGCTAACTGAGAAGTCTAGCTTTGCCACTTTATTAGAATCCT  800

seq1  CTGAGCAAAGCATTTCGCTTGCTAAGTCTTAGTGTCTATCTGTCAAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAAAGCATTTCGCTTGCTAAGTCTTAGTGTCTATCTGTCAAATGA  850

seq1  AGATGTTATCAGCTCACTGAGGACATTGCATGGGCTGAAGAGGATAGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTATCAGCTCACTGAGGACATTGCATGGGCTGAAGAGGATAGAGG  900

seq1  TACTTGTCTAACCGGGATGGAGAGATCCTTGCGTCTGTCTGTCTGACCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTCTAACCGGGATGGAGAGATCCTTGCGTCTGTCTGTCTGACCAG  950

seq1  TTCTGGGGCTGGTCCTCGGTCTCGGCATGCCAGTGTCCTTACCCCTCTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGGCTGGTCCTCGGTCTCGGCATGCCAGTGTCCTTACCCCTCTGG  1000

seq1  GGTCCAGCAATGCTCTCTGCTTGGCCCTCTCCAAGCTC-TCTGTATTGCA  1049
      |||||||||||||||||||||||||||||||||   || |||||| ||||
seq2  GGTCCAGCAATGCTCTCTGCTTGGCCCTCTCCAGCTTCTTCTGTA-TGCA  1049

seq1  GTTGCTTCCTCCAGCCATGCAGCTGGAGAGGG-CAATTTGGTGAGTG-AT  1097
      ||||||  || ||| ||||||||||||||||| |||||||||||||| ||
seq2  GTTGCT--CT-CAGGCATGCAGCTGGAGAGGGCCAATTTGGTGAGTGAAT  1096

seq1  TTCATTTACTTAAAG-ACACACTTACACTTGATGG-TTCT--GAGTGATG  1143
      |||||| |||||||| |||||| ||||| |||||| ||||  ||||||| 
seq2  TTCATTAACTTAAAGAACACAC-TACAC-TGATGGCTTCTTGGAGTGATT  1144

seq1  GGGATCAC  1151
      ||||||||
seq2  GGGATCAC  1152