BAC Information

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BAC

Clone NameB6Ng01-176P10
Chromosome3 (Build37)
Map Location 39,554,211 - 39,702,444
singlet/doubletdoublet
Overlap genenone
Upstream geneFat4, LOC100041432, LOC100040853, LOC100041443
Downstream geneLOC100041458, LOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176P10.bB6Ng01-176P10.g
ACCGA004361GA004362
length1,020523
definitionB6Ng01-176P10.b B6Ng01-176P10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,554,211 - 39,555,232)(39,701,916 - 39,702,444)
sequence
gaattctgttcactaaatatttataatctggtagagttatcaagacacat
aaatagaaaagtgttaatatcttagctatgttggtagaacatttggaaat
atgcagaaagccatgtgtttacttcctggccctgcatgagctgggtgtgg
tagcactggtaatcgcagcacatggaacacagaggcagaagatcagaagg
ttagagtcattcttgctcatcttgcaagtgtttgaagccagcttgtgcta
cacgtggttcaaagcacagtggcataaagatagtatctaaatgatgctct
agaaacctagacagttatacttacgtatatacaatctgggataattatga
ttaataataataatagtaataaatgtgatgataatgcaaagagaagttag
aaaggttttccagaagaagagaatggattctgttagagaagatatctttc
tagatcagttaaaagagacagagacacagtgatgcaggatatttgatcac
actgtgaaactgagcttgtgttatgtactggaaaaatctgtttctagttg
tggagtggttcaactctatcacacaccttatcaaagagctttctatttac
tgtaaacaggatttaataaactcaatcttaagtcaagaggcagaataagc
aaccatttcacagggaatgaacatagggaaaaaacatagagaaataagag
gaggtcaggaggatgtatagagagagacacaggaagtagaagagagggac
attcagtgtgaagtgtttttaatttggtatagacaaggaaaagtgtctct
tgtgatgtcagtgcagaggaaggtcatctgggtactttatctgcctctct
gagctagcagctttaaagccagcatctggctcctaagtctttattggtaa
acttttttcaaaaatgagattttgttattaagaaaaaaaacaaggacaag
ggtatgggtatagagattgtttcagtagtgaaaaaaatagcttgccattt
ctcctcagacttgcctgttt
atttacaattatctttttactaagtgaactcttggttttcatttattcag
acattgccaatctctcccttttcttgaagttcaatctcaggtctaattac
cactgcacactggcctcaccaactccccttcttgaacataattactttga
ccattgctataaagatatcattaagcaatgttgttctcttctgttacata
ccatgctgagcttgtgcctaatcctacctcctgtatcttctacactatgc
actgaagtttttgatctttctgattaaagttcctttccctttctcttgta
gtagacatttcttcataaggaaatttgtgatgtgctgtttgaatgcatcc
atatttgttgcatagaaagatgctaaatcaggataagagataaagtgtta
gtgttattctggtgcctttgacatgttcatttcttggtcatgtggcaaat
ttttaacaagagccattttaatattcttttatattctcaggaccaaggga
gtgggtgggttgatagtgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_39554211_39555232
seq2: B6Ng01-176P10.b_44_1063

seq1  GAATTCTGTTCACTAAATATTTATAATCTGGTAGAGTTATCAAGACACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCACTAAATATTTATAATCTGGTAGAGTTATCAAGACACAT  50

seq1  AAATAGAAAAGTGTTAATATCTTAGCTATGTTGGTAGAACATTTGGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAAAGTGTTAATATCTTAGCTATGTTGGTAGAACATTTGGAAAT  100

seq1  ATGCAGAAAGCCATGTGTTTACTTCCTGGCCCTGCATGAGCTGGGTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAAAGCCATGTGTTTACTTCCTGGCCCTGCATGAGCTGGGTGTGG  150

seq1  TAGCACTGGTAATCGCAGCACATGGAACACAGAGGCAGAAGATCAGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTGGTAATCGCAGCACATGGAACACAGAGGCAGAAGATCAGAAGG  200

seq1  TTAGAGTCATTCTTGCTCATCTTGCAAGTGTTTGAAGCCAGCTTGTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTCATTCTTGCTCATCTTGCAAGTGTTTGAAGCCAGCTTGTGCTA  250

seq1  CACGTGGTTCAAAGCACAGTGGCATAAAGATAGTATCTAAATGATGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGTTCAAAGCACAGTGGCATAAAGATAGTATCTAAATGATGCTCT  300

seq1  AGAAACCTAGACAGTTATACTTACGTATATACAATCTGGGATAATTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTAGACAGTTATACTTACGTATATACAATCTGGGATAATTATGA  350

seq1  TTAATAATAATAATAGTAATAAATGTGATGATAATGCAAAGAGAAGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATAATAATAGTAATAAATGTGATGATAATGCAAAGAGAAGTTAG  400

seq1  AAAGGTTTTCCAGAAGAAGAGAATGGATTCTGTTAGAGAAGATATCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTTTCCAGAAGAAGAGAATGGATTCTGTTAGAGAAGATATCTTTC  450

seq1  TAGATCAGTTAAAAGAGACAGAGACACAGTGATGCAGGATATTTGATCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAGTTAAAAGAGACAGAGACACAGTGATGCAGGATATTTGATCAC  500

seq1  ACTGTGAAACTGAGCTTGTGTTATGTACTGGAAAAATCTGTTTCTAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAAACTGAGCTTGTGTTATGTACTGGAAAAATCTGTTTCTAGTTG  550

seq1  TGGAGTGGTTCAACTCTATCACACACCTTATCAAAGAGCTTTCTATTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGGTTCAACTCTATCACACACCTTATCAAAGAGCTTTCTATTTAC  600

seq1  TGTAAACAGGATTTAATAAACTCAATCTTAAGTCAAGAGGCAGAATAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACAGGATTTAATAAACTCAATCTTAAGTCAAGAGGCAGAATAAGC  650

seq1  AACCATTTCACAGGGAATGAACATAGGGAAAAAACATAGAGAAATAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTCACAGGGAATGAACATAGGGAAAAAACATAGAGAAATAAGAG  700

seq1  GAGGTCAGGAGGATGTATAGAGAGAGACACAGGAAGTAGAAGAGAGGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAGGAGGATGTATAGAGAGAGACACAGGAAGTAGAAGAGAGGGAC  750

seq1  ATTCAGTGTGAAGTGTTTTTAATTTGGTATAGACAAGGAAAAGTGTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGTGAAGTGTTTTTAATTTGGTATAGACAAGGAAAAGTGTCTCT  800

seq1  TGTGATGTCAGGTGCAGAGGAAGGTCATCTGGGTACTTTATCTGCCTCTC  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGTCA-GTGCAGAGGAAGGTCATCTGGGTACTTTATCTGCCTCTC  849

seq1  TGAGCTAGCAGGCTTTAAAGCCAGCATCTGGCTCCTAAGTCTTTATTGGT  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAGCA-GCTTTAAAGCCAGCATCTGGCTCCTAAGTCTTTATTGGT  898

seq1  AAACTTTTTTCAAAAATGAGATTTTGTTATTAAG-AAAAAAACAA-GACA  948
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  AAACTTTTTTCAAAAATGAGATTTTGTTATTAAGAAAAAAAACAAGGACA  948

seq1  AGGGTATGGGTATAGAGATTGTTTTCAGTAGTGAAAAAAAATAGCTTG-C  997
      ||||||||||||||||||||| ||||||||||| |||||||||||||| |
seq2  AGGGTATGGGTATAGAGATTG-TTTCAGTAGTG-AAAAAAATAGCTTGCC  996

seq1  ATTTCTTCCTCAGACTTGCCTGTTT  1022
      ||||| |||||||||||||||||||
seq2  ATTTC-TCCTCAGACTTGCCTGTTT  1020

seq1: chr3_39701916_39702444
seq2: B6Ng01-176P10.g_65_593 (reverse)

seq1  CCCCCCACTATCAACCCACCCACTCCCTTGGTCCTGAGAATATAAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACTATCAACCCACCCACTCCCTTGGTCCTGAGAATATAAAAGAA  50

seq1  TATTAAAATGGCTCTTGTTAAAAATTTGCCACATGACCAAGAAATGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAATGGCTCTTGTTAAAAATTTGCCACATGACCAAGAAATGAACA  100

seq1  TGTCAAAGGCACCAGAATAACACTAACACTTTATCTCTTATCCTGATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAGGCACCAGAATAACACTAACACTTTATCTCTTATCCTGATTTA  150

seq1  GCATCTTTCTATGCAACAAATATGGATGCATTCAAACAGCACATCACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTCTATGCAACAAATATGGATGCATTCAAACAGCACATCACAAA  200

seq1  TTTCCTTATGAAGAAATGTCTACTACAAGAGAAAGGGAAAGGAACTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTATGAAGAAATGTCTACTACAAGAGAAAGGGAAAGGAACTTTAA  250

seq1  TCAGAAAGATCAAAAACTTCAGTGCATAGTGTAGAAGATACAGGAGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGATCAAAAACTTCAGTGCATAGTGTAGAAGATACAGGAGGTAG  300

seq1  GATTAGGCACAAGCTCAGCATGGTATGTAACAGAAGAGAACAACATTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGCACAAGCTCAGCATGGTATGTAACAGAAGAGAACAACATTGCT  350

seq1  TAATGATATCTTTATAGCAATGGTCAAAGTAATTATGTTCAAGAAGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATATCTTTATAGCAATGGTCAAAGTAATTATGTTCAAGAAGGGGA  400

seq1  GTTGGTGAGGCCAGTGTGCAGTGGTAATTAGACCTGAGATTGAACTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGAGGCCAGTGTGCAGTGGTAATTAGACCTGAGATTGAACTTCAA  450

seq1  GAAAAGGGAGAGATTGGCAATGTCTGAATAAATGAAAACCAAGAGTTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGAGAGATTGGCAATGTCTGAATAAATGAAAACCAAGAGTTCAC  500

seq1  TTAGTAAAAAGATAATTGTAAATGAATTC  529
      |||||||||||||||||||||||||||||
seq2  TTAGTAAAAAGATAATTGTAAATGAATTC  529