BAC Information

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BAC

Clone NameB6Ng01-177I01
Chromosome3 (Build37)11 (Build37)
Map Location 25,022,626 - 25,023,57192,022,993 - 92,023,230
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG635702, EG665189
Downstream geneLOC100039592, Nlgn1, LOC621017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177I01.bB6Ng01-177I01.g
ACCGA004756GA004757
length1,135237
definitionB6Ng01-177I01.b B6Ng01-177I01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,022,626 - 25,023,571)(92,022,993 - 92,023,230)
sequence
gaattcttcatcagtttatttcttcataaaaattcctcaaatttttaatc
tatcctgtcagcttcaatcactttttctcctgcctgtaatttttttataa
aagtatacatgtacatgtttaggccactatcacaataccacttgcctctc
tctctctctctctctctctctctctctctctctgggttatgtaggccgta
agcacacagtgagcttcctaagatccaggtcttgtcctggggaatcctcc
taatcaccagtggcattccttgctcttaggtcacagcaggcacccacttg
aaaaacaggaatgaattctacctcccctagtagtcctctccttaattgcc
acccggcacaaatcagataaaactaccaaacagcatggtacaagttgaat
gtcctgtggtacctactggtagtcacctaaaatccatttttatttgtttc
atattaacagtttagctaaataggtggccttcttaatccaaagaaattga
atttcccaggatcctctactgcaaatattatcatgtaataagattctaac
cagtaaaatatacagatctaaccattgattttcaatgaaactggcttcca
tttaactatgtaagttttccaaattagaatggaagtcctgcagtaacccc
accttagccttggacagaacagtaggaacttgagatcctagatatcccag
gaatatgagattggtaaattactgaagctaatgtcttggacatggtgaac
aggaaataatgtaatggaagaagacattaactcctttcttatttaatcaa
ggtatatgccaagtatcttttctatatacagtaattttgttttgcaaata
caacaaacaaatacacacactgtactatacagctatacctacacataaag
tctagaaaatgggcaaactgggtgtacaaaggtaaaaatatttaggtaca
tagggatatgactttcaagaaagaaaaagttaacttactcataaatagag
agcctggtttactttgaattaacacaacgaaatgcctagaagaatctatc
acctattatttcatcgacggaacagtattttatgcacaggtagttaaact
taaaattcaaaatttatttgcgacacctgcatttg
gaattctcagttaggctccatgcttttttttttttttttttttttttttt
tttactatttttttttattacgttttttcctcaattacatttccaatgct
atcccaaaagtcccccaaaccctcccccccccacaaactcccctacccac
ccattcccactttttggccctggtgatcccctttacgggggcatgaccat
gttgcctgaccaatgggcatctctttgagggatggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_25022626_25023571
seq2: B6Ng01-177I01.b_225_1176

seq1  GGGTTATGTAGGCCGTAAGCACACAGTGAGCTTCCTAAGATCCAGGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATGTAGGCCGTAAGCACACAGTGAGCTTCCTAAGATCCAGGTCTT  50

seq1  GTCCTGGGGAATCCTCCTAATCACCAGTGGCATTCCTTGCTCTTAGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGGAATCCTCCTAATCACCAGTGGCATTCCTTGCTCTTAGGTCA  100

seq1  CAGCAGGCACCCACTTGAAAAACAGGAATGAATTCTACCTCCCCTAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGCACCCACTTGAAAAACAGGAATGAATTCTACCTCCCCTAGTAG  150

seq1  TCCTCTCCTTAATTGCCACCCGGCACAAATCAGATAAAACTACCAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCTTAATTGCCACCCGGCACAAATCAGATAAAACTACCAAACAG  200

seq1  CATGGTACAAGTTGAATGTCCTGTGGTACCTACTGGTAGTCACCTAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTACAAGTTGAATGTCCTGTGGTACCTACTGGTAGTCACCTAAAAT  250

seq1  CCATTTTTATTTGTTTCATATTAACAGTTTAGCTAAATAGGTGGCCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTATTTGTTTCATATTAACAGTTTAGCTAAATAGGTGGCCTTCT  300

seq1  TAATCCAAAGAAATTGAATTTCCCAGGATCCTCTACTGCAAATATTATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAAAGAAATTGAATTTCCCAGGATCCTCTACTGCAAATATTATCA  350

seq1  TGTAATAAGATTCTAACCAGTAAAATATACAGATCTAACCATTGATTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAAGATTCTAACCAGTAAAATATACAGATCTAACCATTGATTTTC  400

seq1  AATGAAACTGGCTTCCATTTAACTATGTAAGTTTTCCAAATTAGAATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACTGGCTTCCATTTAACTATGTAAGTTTTCCAAATTAGAATGGA  450

seq1  AGTCCTGCAGTAACCCCACCTTAGCCTTGGACAGAACAGTAGGAACTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGCAGTAACCCCACCTTAGCCTTGGACAGAACAGTAGGAACTTGA  500

seq1  GATCCTAGATATCCCAGGAATATGAGATTGGTAAATTACTGAAGCTAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTAGATATCCCAGGAATATGAGATTGGTAAATTACTGAAGCTAATG  550

seq1  TCTTGGACATGGTGAACAGGAAATAATGTAATGGAAGAAGACATTAACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGACATGGTGAACAGGAAATAATGTAATGGAAGAAGACATTAACTC  600

seq1  CTTTCTTATTTAATCAAGGTATATGCCAAGTATCTTTTCTATATACAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTATTTAATCAAGGTATATGCCAAGTATCTTTTCTATATACAGTA  650

seq1  ATTTTG-TTTGCAAATACAAACAAACAAATACACACACTGTACTATACAG  699
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTTTGTTTTGCAAATAC-AACAAACAAATACACACACTGTACTATACAG  699

seq1  CTATACCTACACATAAAGTCTAGAAAATGGGCAAACTGGGTGTACAAAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCTACACATAAAGTCTAGAAAATGGGCAAACTGGGTGTACAAAGG  749

seq1  TAAAAATATTTAGGTACA-AGGGATATGAC-TTCAAGAAAG-AAAAGTAA  796
      |||||||||||||||||| ||||||||||| |||||||||| |||||| |
seq2  TAAAAATATTTAGGTACATAGGGATATGACTTTCAAGAAAGAAAAAGTTA  799

seq1  ACTTAACTCAATAAATAGAGAGC--TGTTTACTTTGAATTAACACAACAG  844
      |||| |||| |||||||||||||   |||||||||||||||||||||| |
seq2  ACTT-ACTC-ATAAATAGAGAGCCTGGTTTACTTTGAATTAACACAAC-G  846

seq1  AAATG-CTAGAAGAAACCATCA-CTA-TAATTCATACGACAGAACATTAT  891
      ||||| ||||||||| | |||| ||| || ||||| |||| ||||| |||
seq2  AAATGCCTAGAAGAATCTATCACCTATTATTTCAT-CGACGGAACAGTAT  895

seq1  TATTATGCACAAGGTAGT--AACATAACAATTCAAATATAATTAG---CA  936
      | |||||||| |||||||  ||| ||| ||||||||  | ||| |   ||
seq2  T-TTATGCAC-AGGTAGTTAAACTTAA-AATTCAAAATTTATTTGCGACA  942

seq1  ACTGCATTTG  946
       |||||||||
seq2  CCTGCATTTG  952

seq1: chr11_92022993_92023230
seq2: B6Ng01-177I01.g_56_292 (reverse)

seq1  GGCCATCACTGGAAAGAGATGCCCATTGGACATGCAAACTTTATATGCCC  50
      ||||||| ||  ||||||||||||||||| || ||||  |    ||||||
seq2  GGCCATCCCT-CAAAGAGATGCCCATTGGTCAGGCAACATGGTCATGCCC  49

seq1  CAGTAAAGGGGAACGCCAGGGCCAAAAAGTGGGAATGGGTGGGTAGGGGA  100
      | |||||||||| | |||||||||||||||||||||||||||||||||||
seq2  CCGTAAAGGGGATCACCAGGGCCAAAAAGTGGGAATGGGTGGGTAGGGGA  99

seq1  GTGTGTGGGGGGGGGAGGGTGTGGGGGACTTTTGGGATAGCATTGGAAAT  150
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTTTGTGGGGGGGGGAGGGTTTGGGGGACTTTTGGGATAGCATTGGAAAT  149

seq1  GTAATTGAGGAAAATACGTAATAAAAAAAAATAGTAAAAAAAAAAAAAAA  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTAATTGAGGAAAAAACGTAATAAAAAAAAATAGTAAAAAAAAAAAAAAA  199

seq1  AAAAAAAAAAAAAAAGCATGGAGCCTAACTGAGAATTC  238
      ||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAGCATGGAGCCTAACTGAGAATTC  237