BAC Information

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BAC

Clone NameB6Ng01-177J04
Chromosome3 (Build37)
Map Location 123,782,192 - 123,909,567
singlet/doubletdoublet
Overlap geneLOC100043333
Upstream geneSynpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
Downstream geneEG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817, LOC668820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177J04.bB6Ng01-177J04.g
ACCGA004803GA004804
length1,050934
definitionB6Ng01-177J04.b B6Ng01-177J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,908,521 - 123,909,567)(123,782,192 - 123,783,134)
sequence
gaattcttatacaatgaagtgtggtgtttttctttaatgaagctttaatt
gcatccttaaatttttttaattttcttactttgatggggtttttagttaa
ttattatctttcagttttatttttccactcaaacttctcaagaggctatg
atacagaacatttataaaagtaattatctacatgtcatggaattgtgcct
tataacataaaatataattgtttctgcctgaaaatatttctgtgaaagaa
agagtgtaagaaagggcataattgtatatgacaagtgttctccaacttta
ttgaaaattaaaccaattcttccatcatctatttaaagaagaaatattga
aaatgatttgttctatatagtaattggatgttaatgcctagtaacttgaa
actataattctattcactttaaaatagaaaagtgacataaacgctaatat
tttcatgcaaagccaagattccttcaagttcatataatctctctgactca
tagagagaccatggaaagagtaaagcctgaatttgagagcttggtatata
gtgcagtatttggttagtgtagctttgtttattatgaatgcagctgttct
acgcatgtgtgtacatttgtgtatactcatcacatacagtatcatgcttg
aataaatgcaaatttagggatgactagatctatgtaattaacatatgagt
tacaacaaagtgtcgtggctttcatgaaagcattttaaccatttgctcta
acttttctatccaacaaattatcttcagggctttcatgtatgttgcagtg
tatgtgtatgcatgtaatttagatgttcacataccattttgtctaataat
taaatagcgcttaataatattaaaggaaatcatagtgtattgtaactctt
caactgcatttaaatattgagattaaatagaatagtgattagatcaatgt
tttgaggattatctcttacaattatgtagtcttatacaagtattacaatc
ttaagtaacccacaattaggataataggtactatcattaaatggccaaat


gaattctgcatgttaagcacctgggccaaagggtttatttatttattttt
cagtcgggagattttttaatgactgcttctatttcatttgatgtagtgag
tctattaaaattatttgttttattttgatagcttttgcatgttaaatata
cctagaaatccatacatttcttttagatctttttcagtttagtggaatat
atttttgaagtatgtcctacttctccgacttttttaatgtctcttgtaat
gtttgccctttaacatctaattttatagcttttgttttttgtgactttta
atttagctaattgtcaatttccttaatcttttaaaagtggcaacttttgt
ttcattgattctttgtgatgttttaaatttgcattttattaatttcagcc
ctctctttccatcgacttctcttagatgttgtttattctggtaatataat
taactctcagtttatttcagaggagttcttatctctaagacaatacattt
ttttcaacagggtgaatggaccagaacagactcatatgaaagctgtagga
atacaaacagaccatgcattctatgatacccttgtgttatattgaaaatt
taatattattcaagaaaactcctctttgaggtctcaaagtccttatctag
catgttgtctaatattgaatctgagtttccttcctgatgcctgagtagta
tgccaggtataccatgtctagaaccctatgggagatagcaattgctattt
tccacaagttcttgaattcctcttttaatatcagaatcagcaaataaggg
ccctaaataaattattttacacaatgcatggactatcatgatgaattctg
ttcatataactacatatagctaaagaatggggtatattgtctgcctatgg
acactattctcagcattgatagcaagttcagact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_123908521_123909567
seq2: B6Ng01-177J04.b_41_1090 (reverse)

seq1  ATTT-GCCATTTAATGGATAAGTTACTATTATCTTATTTGTGGGTTTAAC  49
      |||| |||||||||| ||| |||  |||||||| || ||||||| |||  
seq2  ATTTGGCCATTTAAT-GAT-AGTACCTATTATCCTAATTGTGGG-TTACT  47

seq1  TAAGTTGTTAATAACTGTTATAGACTACATA--TGTAAGAAGATTAATCT  97
      |||| |  |||||  |||   ||||||||||  |||||| |||| |  ||
seq2  TAAGATTGTAATACTTGTATAAGACTACATAATTGTAAG-AGATAATCCT  96

seq1  C-AAACATTGATCT-ATCACCTATCTATTTAATCTC-ATATTTAAATGCA  144
      | |||||||||||| |||||   ||||||||||||| |||||||||||||
seq2  CAAAACATTGATCTAATCACTATTCTATTTAATCTCAATATTTAAATGCA  146

seq1  G-TGAAGAGTTACAATACACTATGATTTCCTTT-ATATTATTAAGCGCTA  192
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTTGAAGAGTTACAATACACTATGATTTCCTTTAATATTATTAAGCGCTA  196

seq1  TTTAATTATTAGAC-AAATGGTATTGTGAACATCTTAAATTACATGCATA  241
      |||||||||||||| |||||||| |||||||||| |||||||||||||||
seq2  TTTAATTATTAGACAAAATGGTA-TGTGAACATC-TAAATTACATGCATA  244

seq1  CACATACACTTGCACATACATGAAAGCCCTGAAGATAATTTGTTGGATAG  291
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  CACATACACTGCAACATACATGAAAGCCCTGAAGATAATTTGTTGGATAG  294

seq1  AAAAGTTAGAGCAAATGGTTAAAATGCTTTCATGAAAGCCACGACACTTT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTAGAGCAAATGGTTAAAATGCTTTCATGAAAGCCACGACACTTT  344

seq1  GTTGTAACTCATATGTTAATTACATAGATCTAGTCATCCCTAAATTTGCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAACTCATATGTTAATTACATAGATCTAGTCATCCCTAAATTTGCA  394

seq1  TTTATTCAAGCATGATACTGTATGTGATGAGTATACACAAATGTACACAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCAAGCATGATACTGTATGTGATGAGTATACACAAATGTACACAC  444

seq1  ATGCGTAGAACAGCTGCATTCATAATAAACAAAGCTACACTAACCAAATA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTAGAACAGCTGCATTCATAATAAACAAAGCTACACTAACCAAATA  494

seq1  CTGCACTATATACCAAGCTCTCAAATTCAGGCTTTACTCTTTCCATGGTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTATATACCAAGCTCTCAAATTCAGGCTTTACTCTTTCCATGGTC  544

seq1  TCTCTATGAGTCAGAGAGATTATATGAACTTGAAGGAATCTTGGCTTTGC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATGAGTCAGAGAGATTATATGAACTTGAAGGAATCTTGGCTTTGC  594

seq1  ATGAAAATATTAGCGTTTATGTCACTTTTCTATTTTAAAGTGAATAGAAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATATTAGCGTTTATGTCACTTTTCTATTTTAAAGTGAATAGAAT  644

seq1  TATAGTTTCAAGTTACTAGGCATTAACATCCAATTACTATATAGAACAAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTTCAAGTTACTAGGCATTAACATCCAATTACTATATAGAACAAA  694

seq1  TCATTTTCAATATTTCTTCTTTAAATAGATGATGGAAGAATTGGTTTAAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCAATATTTCTTCTTTAAATAGATGATGGAAGAATTGGTTTAAT  744

seq1  TTTCAATAAAGTTGGAGAACACTTGTCATATACAATTATGCCCTTTCTTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATAAAGTTGGAGAACACTTGTCATATACAATTATGCCCTTTCTTA  794

seq1  CACTCTTTCTTTCACAGAAATATTTTCAGGCAGAAACAATTATATTTTAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTTCTTTCACAGAAATATTTTCAGGCAGAAACAATTATATTTTAT  844

seq1  GTTATAAGGCACAATTCCATGACATGTAGATAATTACTTTTATAAATGTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAGGCACAATTCCATGACATGTAGATAATTACTTTTATAAATGTT  894

seq1  CTGTATCATAGCCTCTTGAGAAGTTTGAGTGGAAAAATAAAACTGAAAGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCATAGCCTCTTGAGAAGTTTGAGTGGAAAAATAAAACTGAAAGA  944

seq1  TAATAATTAACTAAAAACCCCATCAAAGTAAGAAAATTAAAAAAATTTAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTAACTAAAAACCCCATCAAAGTAAGAAAATTAAAAAAATTTAA  994

seq1  GGATGCAATTAAAGCTTCATTAAAGAAAAACACCACACTTCATTGTATAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAATTAAAGCTTCATTAAAGAAAAACACCACACTTCATTGTATAA  1044

seq1  GAATTC  1047
      ||||||
seq2  GAATTC  1050


seq1: chr3_123782192_123783134
seq2: B6Ng01-177J04.g_64_997

seq1  GAATTCTGCATGTTAAGCACCTGGGCCAAAGGGTTTATTTATTTATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATGTTAAGCACCTGGGCCAAAGGGTTTATTTATTTATTTTT  50

seq1  CAGTCGGGAGATTTTTTAATGACTGCTTCTATTTCATTTGATGTAGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCGGGAGATTTTTTAATGACTGCTTCTATTTCATTTGATGTAGTGAG  100

seq1  TCTATTAAAATTATTTGTTTTATTTTGATAGCTTTTGCATGTTAAATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAAAATTATTTGTTTTATTTTGATAGCTTTTGCATGTTAAATATA  150

seq1  CCTAGAAATCCATACATTTCTTTTAGATCTTTTTCAGTTTAGTGGAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAATCCATACATTTCTTTTAGATCTTTTTCAGTTTAGTGGAATAT  200

seq1  ATTTTTGAAGTATGTCCTACTTCTCCGACTTTTTTAATGTCTCTTGTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGAAGTATGTCCTACTTCTCCGACTTTTTTAATGTCTCTTGTAAT  250

seq1  GTTTGCCCTTTAACATCTAATTTTATAGCTTTTGTTTTTTGTGACTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCCTTTAACATCTAATTTTATAGCTTTTGTTTTTTGTGACTTTTA  300

seq1  ATTTAGCTAATTGTCAATTTCCTTAATCTTTTAAAAGTGGCAACTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCTAATTGTCAATTTCCTTAATCTTTTAAAAGTGGCAACTTTTGT  350

seq1  TTCATTGATTCTTTGTGATGTTTTAAATTTGCATTTTATTAATTTCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGATTCTTTGTGATGTTTTAAATTTGCATTTTATTAATTTCAGCC  400

seq1  CTCTCTTTCCATCGACTTCTCTTAGATGTTGTTTATTCTGGTAATATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTCCATCGACTTCTCTTAGATGTTGTTTATTCTGGTAATATAAT  450

seq1  TAACTCTCAGTTTATTTCAGAGGAGTTCTTATCTCTAAGACAATACATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTCAGTTTATTTCAGAGGAGTTCTTATCTCTAAGACAATACATTT  500

seq1  TTTTCAACAGGGTGAATGGACCAGAACAGACTCATATGAAAGCTGTAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACAGGGTGAATGGACCAGAACAGACTCATATGAAAGCTGTAGGA  550

seq1  ATACAAACAGACCATGCATTCTATGATACCCTTGTGTTATATTGAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAACAGACCATGCATTCTATGATACCCTTGTGTTATATTGAAAATT  600

seq1  TAATATTATTCAAGAAAACTCCTCTTTGAGGTCTCAAAGTCCTTATCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTATTCAAGAAAACTCCTCTTTGAGGTCTCAAAGTCCTTATCTAG  650

seq1  CATGTTTGTCTAATATTGAATCTGAGTTTCCTTCCTGATGCCTGAGTAGT  700
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATG-TTGTCTAATATTGAATCTGAGTTTCCTTCCTGATGCCTGAGTAGT  699

seq1  ATGCCAGGTATACCATGTCTAGAACCCTATGGGAGATAGCAATTGCTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGGTATACCATGTCTAGAACCCTATGGGAGATAGCAATTGCTATT  749

seq1  TT-CACAAAGTCTTGAATTCCTCTTTTAATATCAGAATCAGCAAATAAAG  799
      || |||||  |||||||||||||||||||||||||||||||||||||| |
seq2  TTCCACAAGTTCTTGAATTCCTCTTTTAATATCAGAATCAGCAAATAAGG  799

seq1  GCCCTAAATAAA-TATTTTACACAATGCATGAACTATCATGATGAATTCT  848
      |||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  GCCCTAAATAAATTATTTTACACAATGCATGGACTATCATGATGAATTCT  849

seq1  GTTTCATATATACTACTATATAGCTAAGAAAATGTGGTAATATTGTCTGC  898
      | |||||||| ||||| |||||||||| | |||| ||| |||||||||||
seq2  G-TTCATATA-ACTAC-ATATAGCTAA-AGAATGGGGT-ATATTGTCTGC  894

seq1  ACTATGGACACTATTTCTCAGCATTGAATAGCAAAGTTCAAGACT  943
       |||||||||||| |||||||||||| ||||| |||||| |||||
seq2  -CTATGGACACTA-TTCTCAGCATTG-ATAGC-AAGTTC-AGACT  934


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